Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0026100 Rhododendron simsii HOM05D000358 ORTHO05D009346 2.0e-55 218.8 106 100.0
CSS0040373 Camellia sinensis var. sinensis HOM05D000358 ORTHO05D009346 9.8e-50 199.9 106 86.8
Actinidia09124 Actinidia chinensis HOM05D000358 ORTHO05D009346 4.1e-48 194.5 106 85.8
Dinv32921 Davidia involucrata HOM05D000358 ORTHO05D002525 3.5e-47 191.4 105 85.7
CANSAT25G1780 Cannabis sativa HOM05D000358 ORTHO05D009346 7.7e-47 190.3 106 84.0
GSVIVG01001163001 Vitis vinifera HOM05D000358 ORTHO05D009346 1.3e-46 189.5 106 84.0
Sabra05G0160900 Salix brachista HOM05D000358 ORTHO05D009346 2.2e-46 188.7 106 81.1
TAR375G0394 Trochodendron aralioides HOM05D000358 ORTHO05D009346 5.0e-46 187.6 106 81.1
MBI04_g20822_MAGBIO Magnolia biondii HOM05D000358 ORTHO05D009346 8.5e-46 186.8 105 81.9
TAR636G2394 Trochodendron aralioides HOM05D000358 ORTHO05D009346 1.5e-45 186.0 106 80.2
Atru.chr5.1460 Acer truncatum HOM05D000358 ORTHO05D009346 2.5e-45 185.3 105 81.0
Lj1A47T39 Lonicera japonica HOM05D000358 ORTHO05D009346 3.2e-45 184.9 106 82.1
Manes.05G077400 Manihot esculenta HOM05D000358 ORTHO05D009346 9.5e-45 183.3 106 80.2
FvH4_2g23371 Fragaria vesca HOM05D000358 ORTHO05D009346 1.2e-44 183.0 105 81.9
Glyma.03G155200 Glycine max HOM05D000358 ORTHO05D009346 4.7e-44 181.0 105 78.1
Thecc.01G276900 Theobroma cacao HOM05D000358 ORTHO05D009346 1.0e-43 179.9 106 76.4
Ciclev10022514m.g Citrus clementina HOM05D000358 ORTHO05D009346 3.0e-43 178.3 106 76.4
Lsat_1_v5_gn_9_3480 Lactuca sativa HOM05D000358 ORTHO05D009346 4.0e-43 177.9 103 77.7
RcHm_v2.0_Chr6g0290831 Rosa chinensis HOM05D000358 ORTHO05D009346 4.0e-43 177.9 105 79.0
CsaV3_6G037210 Cucumis sativus L. HOM05D000358 ORTHO05D009346 6.8e-43 177.2 106 74.5
MSTRG.12558 Avicennia marina HOM05D000358 ORTHO05D009346 8.8e-43 176.8 105 74.3
Sed0015724 Sechium edule HOM05D000358 ORTHO05D009346 8.8e-43 176.8 106 77.4
Aqoxy2G03373 Aquilegia oxysepala HOM05D000358 ORTHO05D009346 1.2e-42 176.4 104 76.9
CiPaw.07G090600 Carya illinoinensis HOM05D000358 ORTHO05D009346 1.2e-42 176.4 103 77.7
TWI14G1410 Tripterygium wilfordii HOM05D000358 ORTHO05D009346 1.5e-42 176.0 105 75.2
Phvul.001G152500 Phaseolus vulgaris HOM05D000358 ORTHO05D009346 2.6e-42 175.3 105 79.0
MD11G1284000 Malus domestica HOM05D000358 ORTHO05D009346 3.4e-42 174.9 106 76.4
HanXRQChr15g0466741 Helianthus annuus HOM05D000358 ORTHO05D009346 4.4e-42 174.5 106 76.4
PGR044G2401 Punica granatum HOM05D000358 ORTHO05D009346 4.4e-42 174.5 106 74.5
Duzib133G0337 Durio zibethinus HOM05D000358 ORTHO05D009346 5.7e-42 174.1 106 74.5
Eucgr.K03368 Eucalyptus grandis HOM05D000358 ORTHO05D009346 5.7e-42 174.1 100 78.0
Cpa.g.sc52.51 Carica papaya HOM05D000358 ORTHO05D009346 7.5e-42 173.7 106 75.5
Prupe.8G239600 Prunus persica HOM05D000358 ORTHO05D009346 7.5e-42 173.7 106 74.5
SGA_v2.0_scaffold81G26022 Striga asiatica HOM05D000358 ORTHO05D009346 1.3e-41 172.9 105 75.2
arahy.Tifrunner.gnm1.ann1.1D6AAZ Arachis hypogaea HOM05D000358 ORTHO05D009346 1.7e-41 172.6 106 76.4
arahy.Tifrunner.gnm1.ann1.M7C8NM Arachis hypogaea HOM05D000358 ORTHO05D009346 1.7e-41 172.6 106 76.4
Nitab4.5_0004318g0030 Nicotiana tabacum HOM05D000358 ORTHO05D009346 1.7e-41 172.6 105 75.2
Nitab4.5_0005971g0010 Nicotiana tabacum HOM05D000358 ORTHO05D009346 3.7e-41 171.4 105 74.3
Sopen09g027050 Solanum pennellii HOM05D000358 ORTHO05D009346 6.3e-41 170.6 105 75.2
Migut.N02045 Erythranthe guttata HOM05D000358 ORTHO05D009346 1.8e-40 169.1 105 74.3
PSO761G0166 Papaver somniferum HOM05D000358 ORTHO05D009346 1.8e-40 169.1 106 72.6
Peaxi162Scf00641g00315 Petunia axillaris HOM05D000358 ORTHO05D009346 1.8e-40 169.1 105 73.3
Cc01_g19380 Coffea canephora HOM05D000358 ORTHO05D009346 3.1e-40 168.3 100 76.0
Sp6g02670 Schrenkiella parvula HOM05D000358 ORTHO05D009346 3.1e-40 168.3 106 71.7
EL10Ac5g10557 Beta vulgaris HOM05D000358 ORTHO05D009346 4.1e-40 167.9 106 72.6
PSO210G0760 Papaver somniferum HOM05D000358 ORTHO05D009346 5.4e-40 167.5 106 71.7
ECA247G2961 Erigeron canadensis HOM05D000358 ORTHO05D009346 7.0e-40 167.2 104 71.2
SalBow6G4489 Salvia bowleyana HOM05D000358 ORTHO05D009346 7.0e-40 167.2 101 74.3
Gorai.007G137700 Gossypium raimondii HOM05D000358 ORTHO05D009346 9.2e-40 166.8 106 71.7
AUR62028609 Chenopodium quinoa HOM05D000358 ORTHO05D009346 1.6e-39 166.0 105 73.3
BolC9t53153H Brassica oleracea HOM05D000358 ORTHO05D009346 3.5e-39 164.9 106 68.9
BcaC04g24011 Brassica carinata HOM05D000358 ORTHO05D009346 4.5e-39 164.5 106 68.9
TPR.G35683 Trifolium pratense HOM05D000358 ORTHO05D009346 5.9e-39 164.1 103 76.7
Carub.0006s3438 Capsella rubella HOM05D000358 ORTHO05D009346 7.8e-39 163.7 106 70.8
Gohir.D11G128700 Gossypium hirsutum HOM05D000358 ORTHO05D009346 7.8e-39 163.7 106 70.8
Medtr7g095090 Medicago truncatula HOM05D000358 ORTHO05D009346 7.8e-39 163.7 107 75.7
Thhalv10029025m.g Eutrema salsugineum HOM05D000358 ORTHO05D009346 1.0e-38 163.3 100 72.0
Potri.005G210700 Populus trichocarpa HOM05D000358 ORTHO05D009346 1.0e-38 163.3 106 72.6
A09p02150 Brassica napus HOM05D000358 ORTHO05D009346 1.3e-38 162.9 104 69.2
BraA09t35864Z Brassica rapa HOM05D000358 ORTHO05D009346 1.3e-38 162.9 106 67.9
Hund09500 Selenicereus undatus HOM05D000358 ORTHO05D009346 1.3e-38 162.9 104 68.3
Os03g0701300 Oryza sativa ssp. japonica HOM05D000358 ORTHO05D009346 1.7e-38 162.5 100 72.0
Gohir.A11G123500 Gossypium hirsutum HOM05D000358 ORTHO05D009346 2.3e-38 162.2 106 69.8
Zm00001eb054110 Zea mays HOM05D000358 ORTHO05D009346 2.9e-38 161.8 105 67.6
THA.LOC104801239 Tarenaya hassleriana HOM05D000358 ORTHO05D009346 3.8e-38 161.4 100 69.0
AL6G50280 Arabidopsis lyrata HOM05D000358 ORTHO05D009346 6.6e-38 160.6 105 67.6
BcaB05g23661 Brassica carinata HOM05D000358 ORTHO05D009346 6.6e-38 160.6 106 66.0
CARHR251060 Cardamine hirsuta HOM05D000358 ORTHO05D009346 6.6e-38 160.6 106 68.9
BcaC03g16171 Brassica carinata HOM05D000358 ORTHO05D009346 3.3e-37 158.3 100 68.0
A02p24950 Brassica napus HOM05D000358 ORTHO05D009346 3.3e-37 158.3 100 68.0
C02p39090 Brassica napus HOM05D000358 ORTHO05D009346 3.3e-37 158.3 100 68.0
BolC2t09919H Brassica oleracea HOM05D000358 ORTHO05D009346 3.3e-37 158.3 100 68.0
BraA02t07485Z Brassica rapa HOM05D000358 ORTHO05D009346 3.3e-37 158.3 100 68.0
AT4G02725 Arabidopsis thaliana HOM05D000358 ORTHO05D009346 7.3e-37 157.1 100 68.0
vmacro02584 Vaccinium macrocarpon HOM05D000358 ORTHO05D009346 7.3e-37 157.1 78 94.9
Lj1g0011093 Lotus japonicus HOM05D000358 ORTHO05D009346 1.2e-36 156.4 105 68.6
Solyc09g065300.4 Solanum lycopersicum HOM05D000358 ORTHO05D009346 2.8e-36 155.2 104 71.2
HPP92_009591 Vanilla planifolia HOM05D002842 ORTHO05D003177 1.0e-35 153.3 103 67.0
C09p02250 Brassica napus HOM05D000358 ORTHO05D009346 2.6e-34 148.7 130 55.4
Aa31LG5G2370 Aethionema arabicum HOM05D000358 ORTHO05D009346 4.4e-34 147.9 93 71.0
COL.COLO4_09074 Corchorus olitorius HOM05D000358 ORTHO05D009346 4.4e-34 147.9 120 63.3
Hma1.2p1_0822F.1_g224410 Hydrangea macrophylla HOM05D000358 ORTHO05D009346 1.4e-32 142.9 78 83.3
Hma1.2p1_0822F.1_g224420 Hydrangea macrophylla HOM05D000358 ORTHO05D009346 1.4e-32 142.9 78 83.3
Lalb_Chr01g0020121 Lupinus albus HOM05D000358 ORTHO05D009346 4.1e-32 141.4 104 64.4
SMO340G0322 Selaginella moellendorffii HOM05D000104 ORTHO05D004059 9.2e-32 140.2 95 65.3
SMO180G0003 Selaginella moellendorffii HOM05D000358 ORTHO05D009346 1.6e-31 139.4 95 65.3
VMungo1383G1528 Vigna mungo HOM05D000358 ORTHO05D009346 5.9e-31 137.5 135 55.6
CDE02G2742 Ceratophyllum demersum HOM05D006420 ORTHO05D008009 1.3e-30 136.3 91 67.0
Mapoly0004s0031 Marchantia polymorpha HOM05D000358 ORTHO05D009346 5.0e-30 134.4 105 59.0
Pp3c26_14500 Physcomitrium patens HOM05D000358 ORTHO05D009346 5.0e-30 134.4 106 54.7
Sc17g0001440 Simmondsia chinensis HOM05D000358 ORTHO05D009346 5.6e-29 131.0 78 78.2
PGSC0003DMG400019331 Solanum tuberosum HOM05D000358 ORTHO05D009346 7.3e-29 130.6 77 76.6
ATR0332G065 Amborella trichopoda HOM05D000358 ORTHO05D009346 8.0e-28 127.1 79 65.8
Haze_04693 Corylus avellana HOM05D000358 ORTHO05D009346 2.0e-26 122.5 78 75.6
Atru.BG.13.p Acer truncatum HOM05D000358 ORTHO05D009346 4.4e-26 121.3 77 72.7
ClCG07G000330 Citrullus lanatus HOM05D000358 ORTHO05D009346 7.5e-26 120.6 91 65.9
Psat3g063840 Pisum sativum HOM05D000358 ORTHO05D009346 1.7e-25 119.4 82 68.3
Eucgr.L00778 Eucalyptus grandis HOM05D000358 ORTHO05D009346 1.6e-23 112.8 69 72.5
AagrBONN_evm.TU.Sc2ySwM_362.2722 Anthoceros agrestis HOM05D000358 ORTHO05D009346 9.5e-21 103.6 76 57.9
unitig_899.g15068 Utricularia gibba HOM05D000454 ORTHO05D000591 1.2e-18 96.7 75 60.0
Eucgr.C01960 Eucalyptus grandis HOM05D000358 ORTHO05D009346 2.9e-17 92.0 59 69.5
Ah.11g050550 Amaranthus hybridus HOM05D000358 ORTHO05D009346 5.2e-11 71.2 107 43.0
QL12p021343 Quercus lobata HOM05D000358 ORTHO05D009346 3.4e-10 68.6 31 90.3
Oeu029468.1 Olea europaea HOM05D000358 ORTHO05D009346 5.8e-10 67.8 30 93.3
FAN20G1711 Fragaria x ananassa HOM05D000358 ORTHO05D009346 3.8e-09 65.1 105 40.0
Nn1g02275 Nelumbo nucifera HOM05D000358 ORTHO05D009346 4.9e-09 64.7 40 75.0
MELO3C014393.2 Cucumis melo HOM05D000358 ORTHO05D009346 6.4e-09 64.3 31 83.9


User provided reference genes

Program Settings