Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0025900 Rhododendron simsii HOM05D003798 ORTHO05D004652 3.7e-310 1067.4 542 100.0
vmacro02581 Vaccinium macrocarpon HOM05D003798 ORTHO05D004652 2.9e-275 951.4 542 90.6
Dinv34765 Davidia involucrata HOM05D003798 ORTHO05D004652 4.0e-240 834.7 539 80.9
CSS0013750 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 2.9e-238 828.6 581 75.2
Dinv32922 Davidia involucrata HOM05D003798 ORTHO05D004652 3.0e-227 792.0 522 78.5
CSS0049215 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 2.3e-219 765.8 529 75.8
TAR636G1714 Trochodendron aralioides HOM05D003798 ORTHO05D004652 3.4e-207 725.3 539 72.2
Prupe.8G239400 Prunus persica HOM05D003798 ORTHO05D004652 2.2e-206 722.6 541 69.5
GSVIVG01001160001 Vitis vinifera HOM05D003798 ORTHO05D004652 9.3e-205 717.2 542 71.2
Gohir.D11G128600 Gossypium hirsutum HOM05D003798 ORTHO05D004652 2.5e-202 709.1 541 69.3
Gorai.007G137600 Gossypium raimondii HOM05D003798 ORTHO05D004652 2.5e-202 709.1 541 69.3
Lj2A1170T17 Lonicera japonica HOM05D003798 ORTHO05D004652 4.3e-202 708.4 544 69.1
RcHm_v2.0_Chr6g0290801 Rosa chinensis HOM05D003798 ORTHO05D004652 4.3e-202 708.4 539 69.4
Gohir.A11G123400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 7.4e-202 707.6 541 69.1
Thecc.01G277100 Theobroma cacao HOM05D003798 ORTHO05D004652 3.7e-201 705.3 542 68.5
Gohir.D08G204500 Gossypium hirsutum HOM05D003798 ORTHO05D004652 2.4e-200 702.6 501 71.5
Cfa006156 Carpinus fangiana HOM05D003798 ORTHO05D004652 9.0e-200 700.7 541 68.6
Gorai.004G216500 Gossypium raimondii HOM05D003798 ORTHO05D004652 2.0e-199 699.5 501 71.3
CANSAT25G1654 Cannabis sativa HOM05D003798 ORTHO05D004652 4.5e-199 698.4 550 66.9
QL12p021373 Quercus lobata HOM05D003798 ORTHO05D004652 6.5e-198 694.5 542 69.4
Gohir.A08G186400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 2.5e-197 692.6 501 70.9
FvH4_2g23360 Fragaria vesca HOM05D003798 ORTHO05D004652 2.1e-196 689.5 538 67.8
FAN24G3171 Fragaria x ananassa HOM05D003798 ORTHO05D004652 2.1e-196 689.5 538 67.8
Potri.002G051800 Populus trichocarpa HOM05D003798 ORTHO05D004652 1.3e-195 686.8 542 66.8
Ciclev10019577m.g Citrus clementina HOM05D003798 ORTHO05D004652 1.8e-195 686.4 530 68.3
FAN20G2449 Fragaria x ananassa HOM05D003798 ORTHO05D004652 1.8e-195 686.4 538 67.7
CiPaw.07G090900 Carya illinoinensis HOM05D003798 ORTHO05D004652 3.9e-195 685.3 552 67.8
FAN27G1242 Fragaria x ananassa HOM05D003798 ORTHO05D004652 4.3e-194 681.8 538 67.5
Nn4g26293 Nelumbo nucifera HOM05D003798 ORTHO05D004652 5.7e-194 681.4 505 69.7
MD03G1263100 Malus domestica HOM05D003798 ORTHO05D004652 1.3e-193 680.2 542 67.0
FAN15G2405 Fragaria x ananassa HOM05D003798 ORTHO05D004652 2.0e-191 672.9 539 66.8
MD11G1283900 Malus domestica HOM05D003798 ORTHO05D004652 3.4e-191 672.2 531 67.4
CsaV3_7G028050 Cucumis sativus L. HOM05D003798 ORTHO05D004652 2.2e-190 669.5 530 67.0
Actinidia09127 Actinidia chinensis HOM05D003798 ORTHO05D004652 5.0e-190 668.3 499 72.5
Phvul.001G152400 Phaseolus vulgaris HOM05D003798 ORTHO05D004652 8.4e-190 667.5 532 66.9
PGR119G1379 Punica granatum HOM05D003798 ORTHO05D004652 3.2e-189 665.6 549 63.9
Lj5g0015989 Lotus japonicus HOM05D003798 ORTHO05D004652 5.5e-189 664.8 542 66.1
DCAR_002728 Daucus carota HOM05D003798 ORTHO05D004652 9.3e-189 664.1 542 66.2
VMungo1383G1837 Vigna mungo HOM05D003798 ORTHO05D004652 1.2e-188 663.7 532 66.7
Glyma.19G157300 Glycine max HOM05D003798 ORTHO05D004652 7.9e-188 661.0 532 66.0
Glyma.03G155100 Glycine max HOM05D003798 ORTHO05D004652 1.8e-187 659.8 502 69.3
ClCG09G007110 Citrullus lanatus HOM05D003798 ORTHO05D004652 1.3e-185 653.7 559 64.2
Potri.005G210500 Populus trichocarpa HOM05D003798 ORTHO05D004652 6.3e-185 651.4 521 65.8
Lalb_Chr06g0162961 Lupinus albus HOM05D003798 ORTHO05D004652 8.2e-185 651.0 531 65.2
Eucgr.H01469 Eucalyptus grandis HOM05D003798 ORTHO05D004652 4.5e-183 645.2 523 64.6
arahy.Tifrunner.gnm1.ann1.Y8QVM3 Arachis hypogaea HOM05D003798 ORTHO05D004652 1.0e-182 644.0 553 62.7
arahy.Tifrunner.gnm1.ann1.PW6FZP Arachis hypogaea HOM05D003798 ORTHO05D004652 3.8e-182 642.1 552 62.7
Migut.D00308 Erythranthe guttata HOM05D003798 ORTHO05D004652 1.1e-181 640.6 529 66.4
Oeu047871.2 Olea europaea HOM05D003798 ORTHO05D004652 5.5e-181 638.3 566 61.5
Sc05g0005620 Simmondsia chinensis HOM05D003798 ORTHO05D004652 1.5e-178 630.2 537 63.3
TWI23G0664 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 1.5e-178 630.2 546 61.7
Lj1g0003787 Lotus japonicus HOM05D003798 ORTHO05D004652 2.5e-178 629.4 506 65.2
Ca_08607_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 4.3e-178 628.6 519 64.4
ECA248G1795 Erigeron canadensis HOM05D003798 ORTHO05D004652 5.7e-178 628.2 496 67.1
Psat3g063960 Pisum sativum HOM05D003798 ORTHO05D004652 1.3e-177 627.1 497 65.4
HanXRQChr15g0466731 Helianthus annuus HOM05D003798 ORTHO05D004652 4.8e-177 625.2 535 63.9
TPR.G9912 Trifolium pratense HOM05D003798 ORTHO05D004652 1.8e-176 623.2 498 66.1
Haze_04695 Corylus avellana HOM05D003798 ORTHO05D004652 3.1e-176 622.5 543 63.4
Lj1A47G33 Lonicera japonica HOM05D003798 ORTHO05D004652 5.3e-176 621.7 542 64.9
Aqoxy2G03370 Aquilegia oxysepala HOM05D003798 ORTHO05D004652 1.7e-174 616.7 549 60.8
Manes.05G077300 Manihot esculenta HOM05D003798 ORTHO05D004652 3.8e-174 615.5 446 71.3
Sed0016197 Sechium edule HOM05D003798 ORTHO05D004652 8.5e-174 614.4 530 63.0
Lsat_1_v5_gn_5_184661 Lactuca sativa HOM05D003798 ORTHO05D004652 2.5e-173 612.8 528 63.4
Medtr7g095030 Medicago truncatula HOM05D003798 ORTHO05D004652 2.6e-170 602.8 497 63.4
Sabra05G0160700 Salix brachista HOM05D003798 ORTHO05D004652 5.3e-168 595.1 571 59.0
Duzib133G0734 Durio zibethinus HOM05D003798 ORTHO05D004652 2.0e-167 593.2 545 60.6
HanXRQChr01g0003001 Helianthus annuus HOM05D003798 ORTHO05D004652 9.7e-162 574.3 510 61.6
SGA_v2.0_scaffold1G00488 Striga asiatica HOM05D003798 ORTHO05D004652 2.0e-159 566.6 525 59.6
TWI59G0387 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 3.8e-158 562.4 536 57.8
Nitab4.5_0000759g0210 Nicotiana tabacum HOM05D003798 ORTHO05D004652 4.7e-156 555.4 581 57.8
Actinidia00771 Actinidia chinensis HOM05D003798 ORTHO05D004652 7.0e-152 541.6 328 83.2
PSO761G0144 Papaver somniferum HOM05D003798 ORTHO05D004652 5.0e-150 535.4 505 58.4
PSO210G1981 Papaver somniferum HOM05D003798 ORTHO05D004652 2.1e-148 530.0 505 58.0
MELO3C015825.2 Cucumis melo HOM05D003798 ORTHO05D004652 4.4e-146 522.3 412 68.0
unitig_749.g13741 Utricularia gibba HOM05D003798 ORTHO05D004652 9.8e-146 521.2 480 58.3
CAN.G1549.7 Capsicum annuum HOM05D003798 ORTHO05D004652 3.7e-145 519.2 413 67.6
ATR0332G031 Amborella trichopoda HOM05D003798 ORTHO05D004652 3.7e-129 466.1 504 49.6
Medtr4g095000 Medicago truncatula HOM05D003798 ORTHO05D004652 2.3e-123 446.8 358 65.4
Cpa.g.sc52.47 Carica papaya HOM05D003798 ORTHO05D004652 5.8e-122 442.2 356 68.3
COL.COLO4_09077 Corchorus olitorius HOM05D003798 ORTHO05D004652 2.7e-119 433.3 513 49.9
arahy.Tifrunner.gnm1.ann1.SSYA5T Arachis hypogaea HOM05D003798 ORTHO05D004652 3.0e-118 429.9 428 54.4
arahy.Tifrunner.gnm1.ann1.97IXSS Arachis hypogaea HOM05D003798 ORTHO05D004652 6.6e-110 402.1 390 56.7
Lsat_1_v5_gn_8_56480 Lactuca sativa HOM05D003798 ORTHO05D004652 1.9e-101 374.0 499 47.5
THA.LOC104801240 Tarenaya hassleriana HOM05D003798 ORTHO05D004652 6.0e-95 352.4 464 45.9
MELO3C015827.2 Cucumis melo HOM05D003798 ORTHO05D004652 4.8e-92 342.8 407 52.8
Nitab4.5_0007361g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 1.5e-85 321.2 294 64.3
C09p02260 Brassica napus HOM05D003798 ORTHO05D004652 1.5e-77 294.7 468 39.3
BcaC04g24012 Brassica carinata HOM05D003798 ORTHO05D004652 4.3e-77 293.1 463 38.7
A09p02180 Brassica napus HOM05D003798 ORTHO05D004652 2.4e-75 287.3 469 38.2
Sp6g02780 Schrenkiella parvula HOM05D003798 ORTHO05D004652 3.1e-75 287.0 497 38.6
AL6G50220 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 5.0e-73 279.6 431 41.1
BcaB01g02007 Brassica carinata HOM05D003798 ORTHO05D004652 6.5e-73 279.3 456 37.7
BolC9t53155H Brassica oleracea HOM05D003798 ORTHO05D004652 1.4e-72 278.1 468 38.5
Thhalv10028579m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 5.5e-72 276.2 454 38.8
Atru.chr5.1458 Acer truncatum HOM05D003798 ORTHO05D004652 1.6e-71 274.6 200 71.0
AL6G50180 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 5.1e-70 269.6 459 39.0
AT4G02740 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 6.7e-70 269.2 434 40.3
DCAR_012485 Daucus carota HOM05D003798 ORTHO05D004652 1.1e-69 268.5 502 38.8
AL6G50260 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 4.3e-69 266.5 445 40.2
BraA09t35866Z Brassica rapa HOM05D003798 ORTHO05D004652 7.4e-69 265.8 470 37.0
Sp6g02720 Schrenkiella parvula HOM05D003798 ORTHO05D004652 7.4e-69 265.8 422 41.2
Carub.0006s3430 Capsella rubella HOM05D003798 ORTHO05D004652 1.6e-68 264.6 536 36.8
Lsat_1_v5_gn_9_3521 Lactuca sativa HOM05D003798 ORTHO05D004652 8.2e-68 262.3 434 40.3
AT4G02760 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.1e-67 261.9 531 36.9
Carub.0006s3435 Capsella rubella HOM05D003798 ORTHO05D004652 4.1e-67 260.0 430 38.6
BcaC01g06734 Brassica carinata HOM05D003798 ORTHO05D004652 9.1e-67 258.8 453 39.5
CARHR251100 Cardamine hirsuta HOM05D003798 ORTHO05D004652 1.5e-66 258.1 434 38.9
C03p37600 Brassica napus HOM05D003798 ORTHO05D004652 2.6e-66 257.3 438 40.2
C03p37640 Brassica napus HOM05D003798 ORTHO05D004652 8.5e-65 252.3 428 39.0
C03p37610 Brassica napus HOM05D003798 ORTHO05D004652 1.4e-64 251.5 435 40.7
Thhalv10029278m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 2.5e-64 250.8 429 38.7
Sp6g02760 Schrenkiella parvula HOM05D003798 ORTHO05D004652 2.5e-64 250.8 429 38.2
BcaC01g06735 Brassica carinata HOM05D003798 ORTHO05D004652 3.2e-64 250.4 428 38.8
BolC3t16054H Brassica oleracea HOM05D003798 ORTHO05D004652 4.2e-64 250.0 428 38.8
Sp6g02730 Schrenkiella parvula HOM05D003798 ORTHO05D004652 3.0e-62 243.8 414 38.6
Carub.0006s3431 Capsella rubella HOM05D003798 ORTHO05D004652 8.8e-62 242.3 445 38.0
A09p02170 Brassica napus HOM05D003798 ORTHO05D004652 2.0e-61 241.1 423 38.8
Aa31LG5G2380 Aethionema arabicum HOM05D003798 ORTHO05D004652 5.7e-61 239.6 466 35.6
BraA09t35865Z Brassica rapa HOM05D003798 ORTHO05D004652 5.7e-61 239.6 423 38.8
C03p37620 Brassica napus HOM05D003798 ORTHO05D004652 3.7e-60 236.9 487 37.2
BraA03t12264Z Brassica rapa HOM05D003798 ORTHO05D004652 6.3e-60 236.1 434 38.2
CARHR251130 Cardamine hirsuta HOM05D003798 ORTHO05D004652 4.5e-58 229.9 376 40.2
Carub.0006s3432 Capsella rubella HOM05D003798 ORTHO05D004652 1.0e-57 228.8 432 35.9
Cpa.g.sc52.48 Carica papaya HOM05D003798 ORTHO05D004652 2.2e-57 227.6 166 69.9
A03p30870 Brassica napus HOM05D003798 ORTHO05D004652 4.2e-56 223.4 431 35.3
Carub.0006s3436 Capsella rubella HOM05D003798 ORTHO05D004652 9.4e-56 222.2 399 37.6
Pp3c6_19750 Physcomitrium patens HOM05D003798 ORTHO05D004652 2.1e-55 221.1 377 36.3
CBR_g46206 Chara braunii HOM05D003798 ORTHO05D004652 5.2e-54 216.5 409 35.5
BolC3t16051H Brassica oleracea HOM05D003798 ORTHO05D004652 4.1e-51 206.8 396 38.6
AL6G50250 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 7.0e-51 206.1 395 36.2
Lsat_1_v5_gn_8_57021 Lactuca sativa HOM05D003798 ORTHO05D004652 1.2e-47 195.3 430 34.2
Lsat_1_v5_gn_4_62701 Lactuca sativa HOM05D003798 ORTHO05D004652 1.6e-47 194.9 150 62.7
Thhalv10029415m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 3.0e-46 190.7 415 34.7
Lj2A1170T18 Lonicera japonica HOM05D003798 ORTHO05D004652 1.0e-38 165.6 189 56.1
Nitab4.5_0024519g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 1.4e-38 165.2 219 46.1
AT4G02735 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 2.0e-37 161.4 424 31.1
Actinidia00759 Actinidia chinensis HOM05D003798 ORTHO05D004652 8.3e-36 156.0 111 75.7
AT4G08535 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.1e-35 155.6 274 39.4
AT4G02733 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 5.4e-35 153.3 281 36.3
Lsat_1_v5_gn_4_100581 Lactuca sativa HOM05D003798 ORTHO05D004652 1.2e-34 152.1 108 64.8
CARHR251080 Cardamine hirsuta HOM05D003798 ORTHO05D004652 1.5e-32 145.2 243 36.6
VMungo1383G1292 Vigna mungo HOM05D003798 ORTHO05D004652 1.9e-32 144.8 92 77.2
Actinidia24901 Actinidia chinensis HOM05D003798 ORTHO05D004652 4.7e-31 140.2 261 41.0
Sp6g02700 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.2e-29 135.6 271 36.5
Rhsim02G0147100 Rhododendron simsii HOM05D003798 ORTHO05D004652 2.6e-29 134.4 80 85.0
BraA03t12263Z Brassica rapa HOM05D000596 ORTHO05D002115 1.6e-26 125.2 177 40.7
A03p30850 Brassica napus HOM05D000596 ORTHO05D002115 3.5e-26 124.0 177 40.1
BcaB07g33030 Brassica carinata HOM05D003798 ORTHO05D004652 5.0e-25 120.2 180 43.3
C06p11970 Brassica napus HOM05D003798 ORTHO05D004652 4.3e-24 117.1 173 45.1
SEGI_05001 Sequoiadendron giganteum HOM05D003798 ORTHO05D004652 1.6e-23 115.2 205 38.0
BolC6t36334H Brassica oleracea HOM05D003798 ORTHO05D004652 4.0e-22 110.5 143 42.7
Aqoxy1G03386 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 5.7e-21 106.7 134 44.8
Actinidia00770 Actinidia chinensis HOM05D003798 ORTHO05D004652 2.2e-20 104.8 61 85.2
AL1084U10010 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 3.2e-19 100.9 117 42.7
Thhalv10029301m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 4.6e-18 97.1 110 46.4
Aa31LG8G1370 Aethionema arabicum HOM05D003798 ORTHO05D004652 1.9e-16 91.7 150 36.7
Lsat_1_v5_gn_4_80681 Lactuca sativa HOM05D003798 ORTHO05D004652 5.6e-16 90.1 59 69.5
Actinidia24900 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.2e-15 89.0 84 59.5
HanXRQChr10g0281951 Helianthus annuus HOM05D003798 ORTHO05D006066 1.2e-15 89.0 65 61.5
VMungo1080G0763 Vigna mungo HOM05D003798 ORTHO05D004652 1.2e-15 89.0 60 66.7
BcaC04g21277 Brassica carinata HOM05D040525 ORTHO05D023659 6.2e-15 86.7 310 28.1
Lsat_1_v5_gn_1_5801 Lactuca sativa HOM05D003798 ORTHO05D004652 1.4e-14 85.5 106 51.9
Lsat_1_v5_gn_7_8121 Lactuca sativa HOM05D003798 ORTHO05D004652 1.8e-14 85.1 83 53.0
BolC6t36333H Brassica oleracea HOM05D003798 ORTHO05D004652 2.3e-14 84.7 118 46.6
BolC9t53154H Brassica oleracea HOM05D003798 ORTHO05D004652 2.3e-14 84.7 129 36.4
BcaC01g06733 Brassica carinata HOM05D003798 ORTHO05D032066 5.2e-14 83.6 104 41.3
Aa31sc472G30 Aethionema arabicum HOM05D003798 ORTHO05D004652 8.9e-14 82.8 151 37.1
Hma1.2p1_1168F.1_g263140 Hydrangea macrophylla HOM05D003798 ORTHO05D004652 3.4e-13 80.9 56 71.4
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 3.7e-12 77.4 303 27.7
BolC3t16050H Brassica oleracea HOM05D003798 ORTHO05D032066 2.4e-11 74.7 151 37.7
Rhsim06G0016300 Rhododendron simsii HOM05D005285 ORTHO05D006829 9.2e-11 72.8 46 80.4
Glyma.06G258700 Glycine max HOM05D003798 ORTHO05D004652 1.2e-10 72.4 74 52.7
Actinidia00760 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.6e-10 72.0 41 85.4
Ca_10811_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 1.6e-10 72.0 80 50.0
Thhalv10029382m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 6.0e-10 70.1 120 35.8
Sp6g02770 Schrenkiella parvula HOM05D009848 ORTHO05D011321 6.0e-10 70.1 93 39.8
arahy.Tifrunner.gnm1.ann1.FYU6J1 Arachis hypogaea HOM05D000331 ORTHO05D021523 8.6e-09 66.2 61 52.5
arahy.Tifrunner.gnm1.ann1.E8A0WP Arachis hypogaea HOM05D003798 ORTHO05D021523 5.6e-08 63.5 60 50.0
C03p37590 Brassica napus HOM05D003798 ORTHO05D032066 1.2e-07 62.4 147 36.1


User provided reference genes

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