Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0023300 Rhododendron simsii HOM05D005179 ORTHO05D006225 5.6e-85 317.8 186 100.0
Ah.15g091740 Amaranthus hybridus HOM05D005179 ORTHO05D006225 8.3e-20 101.3 152 49.3
Ah.08g213000 Amaranthus hybridus HOM05D005179 ORTHO05D006225 5.4e-19 98.6 190 44.7
CSS0035012 Camellia sinensis var. sinensis HOM05D005179 ORTHO05D006225 5.4e-19 98.6 185 43.2
Oeu015958.1 Olea europaea HOM05D005179 ORTHO05D006225 1.7e-17 93.6 181 38.1
TAR636G3147 Trochodendron aralioides HOM05D005179 ORTHO05D006225 5.0e-17 92.0 187 39.0
Dinv11251 Davidia involucrata HOM05D005179 ORTHO05D006225 1.9e-16 90.1 152 42.8
Dinv32955 Davidia involucrata HOM05D005179 ORTHO05D006225 3.3e-16 89.4 152 42.1
Atru.chr5.1383 Acer truncatum HOM05D005179 ORTHO05D006225 7.3e-16 88.2 193 44.6
MSTRG.21570 Avicennia marina HOM05D005179 ORTHO05D006225 7.3e-16 88.2 171 42.1
Lj5g0012316 Lotus japonicus HOM05D005179 ORTHO05D006225 9.5e-16 87.8 189 32.8
Manes.05G074000 Manihot esculenta HOM05D005179 ORTHO05D006225 9.5e-16 87.8 205 43.9
Ciclev10024447m.g Citrus clementina HOM05D005179 ORTHO05D006225 1.2e-15 87.4 198 32.8
Lalb_Chr21g0306521 Lupinus albus HOM05D005179 ORTHO05D006225 1.2e-15 87.4 191 36.1
Nitab4.5_0001028g0210 Nicotiana tabacum HOM05D005179 ORTHO05D006225 1.2e-15 87.4 180 39.4
SalBow4G1980 Salvia bowleyana HOM05D005179 ORTHO05D006225 2.1e-15 86.7 176 36.9
Glyma.19G154300 Glycine max HOM05D005179 ORTHO05D006225 2.8e-15 86.3 174 39.7
Potri.002G215200 Populus trichocarpa HOM05D005179 ORTHO05D006225 2.8e-15 86.3 177 31.6
Hma1.2p1_0628F.1_g191965 Hydrangea macrophylla HOM05D005179 ORTHO05D006225 3.6e-15 85.9 188 36.2
Lalb_Chr25g0290231 Lupinus albus HOM05D005179 ORTHO05D006225 4.7e-15 85.5 195 41.0
TWI59G1208 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 4.7e-15 85.5 187 30.5
Ca_08572_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 1.0e-14 84.3 187 33.7
Potri.014G139200 Populus trichocarpa HOM05D005179 ORTHO05D006225 1.0e-14 84.3 176 31.2
PGR044G1538 Punica granatum HOM05D005179 ORTHO05D006225 1.4e-14 84.0 184 42.9
Sabra14G0104900 Salix brachista HOM05D005179 ORTHO05D006225 1.4e-14 84.0 183 39.9
SalBow6G3683 Salvia bowleyana HOM05D005179 ORTHO05D006225 1.4e-14 84.0 155 41.9
SGA_v2.0_scaffold80G25940 Striga asiatica HOM05D005179 ORTHO05D006225 1.4e-14 84.0 49 69.4
Actinidia21103 Actinidia chinensis HOM05D000756 ORTHO05D000604 1.8e-14 83.6 50 64.0
Glyma.03G151700 Glycine max HOM05D005179 ORTHO05D006225 1.8e-14 83.6 168 38.7
Medtr7g094650 Medicago truncatula HOM05D005179 ORTHO05D006225 2.3e-14 83.2 188 43.6
Cc01_g19710 Coffea canephora HOM05D005179 ORTHO05D006225 3.1e-14 82.8 186 37.6
CANSAT25G0479 Cannabis sativa HOM05D005179 ORTHO05D006225 4.0e-14 82.4 181 34.8
Cpa.g.sc64.166 Carica papaya HOM05D005179 ORTHO05D006225 4.0e-14 82.4 182 37.9
Nitab4.5_0002386g0020 Nicotiana tabacum HOM05D005179 ORTHO05D006225 4.0e-14 82.4 53 58.5
Phvul.001G149300 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 8.9e-14 81.3 185 35.7
Manes.01G209300 Manihot esculenta HOM05D005179 ORTHO05D006225 1.2e-13 80.9 194 37.1
PSO832G0665 Papaver somniferum HOM05D005179 ORTHO05D006225 1.2e-13 80.9 176 40.3
COL.COLO4_09131 Corchorus olitorius HOM05D005179 ORTHO05D006225 1.5e-13 80.5 51 54.9
Sc05g0004870 Simmondsia chinensis HOM05D005179 ORTHO05D006225 1.5e-13 80.5 183 28.4
SGA_v2.0_scaffold11G05800 Striga asiatica HOM05D005179 ORTHO05D006225 1.5e-13 80.5 177 32.2
SGA_v2.0_scaffold258G45766 Striga asiatica HOM05D005179 ORTHO05D006225 1.5e-13 80.5 49 57.1
TPR.G1598 Trifolium pratense HOM05D005179 ORTHO05D006225 1.5e-13 80.5 185 36.8
A09p54910 Brassica napus HOM05D000257 ORTHO05D009070 2.0e-13 80.1 51 58.8
BraA09t40901Z Brassica rapa HOM05D000257 ORTHO05D009070 2.0e-13 80.1 51 58.8
PSO210G7214 Papaver somniferum HOM05D005179 ORTHO05D006225 2.6e-13 79.7 176 39.8
unitig_8.g3720 Utricularia gibba HOM05D005179 ORTHO05D006225 2.6e-13 79.7 153 40.5
AL5G45930 Arabidopsis lyrata HOM05D005179 ORTHO05D006225 3.4e-13 79.3 57 54.4
AT3G63095 Arabidopsis thaliana HOM05D005179 ORTHO05D006225 3.4e-13 79.3 57 54.4
C06p28620 Brassica napus HOM05D005179 ORTHO05D006225 3.4e-13 79.3 57 52.6
BolC6t38030H Brassica oleracea HOM05D005179 ORTHO05D006225 3.4e-13 79.3 57 52.6
Lsat_1_v5_gn_1_29921 Lactuca sativa HOM05D005179 ORTHO05D006225 3.4e-13 79.3 196 35.2
Potri.004G022700 Populus trichocarpa HOM05D005179 ORTHO05D006225 3.4e-13 79.3 185 33.5
Solyc09g064900.1 Solanum lycopersicum HOM05D005179 ORTHO05D006225 3.4e-13 79.3 181 37.0
Carub.0005s2976 Capsella rubella HOM05D005179 ORTHO05D006225 4.4e-13 79.0 57 54.4
THA.LOC104817549 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 4.4e-13 79.0 57 54.4
DCAR_018411 Daucus carota HOM05D005179 ORTHO05D006225 5.8e-13 78.6 185 35.7
RcHm_v2.0_Chr6g0291441 Rosa chinensis HOM05D005179 ORTHO05D006225 5.8e-13 78.6 193 44.0
GSVIVG01011106001 Vitis vinifera HOM05D005179 ORTHO05D006225 5.8e-13 78.6 60 53.3
A04p00290 Brassica napus HOM05D005179 ORTHO05D006225 7.5e-13 78.2 51 56.9
A07p26240 Brassica napus HOM05D005179 ORTHO05D006225 7.5e-13 78.2 51 56.9
C04p30120 Brassica napus HOM05D005179 ORTHO05D006225 7.5e-13 78.2 51 56.9
C08p37810 Brassica napus HOM05D000257 ORTHO05D009070 7.5e-13 78.2 51 56.9
BolC4t24544H Brassica oleracea HOM05D005179 ORTHO05D006225 7.5e-13 78.2 51 56.9
BolC8t51360H Brassica oleracea HOM05D000257 ORTHO05D009070 7.5e-13 78.2 51 56.9
BraA04t15748Z Brassica rapa HOM05D005179 ORTHO05D006225 7.5e-13 78.2 51 56.9
BraA07t30267Z Brassica rapa HOM05D005179 ORTHO05D006225 7.5e-13 78.2 51 56.9
CARHR173410 Cardamine hirsuta HOM05D005179 ORTHO05D006225 7.5e-13 78.2 51 56.9
Migut.D00272 Erythranthe guttata HOM05D005179 ORTHO05D006225 7.5e-13 78.2 150 44.0
FAN20G2888 Fragaria x ananassa HOM05D005179 ORTHO05D006225 9.8e-13 77.8 182 36.3
Sc24g0004150 Simmondsia chinensis HOM05D005179 ORTHO05D006225 9.8e-13 77.8 152 40.8
Potri.014G139100 Populus trichocarpa HOM05D005179 ORTHO05D006225 1.3e-12 77.4 177 32.2
Rhsim01G0275800 Rhododendron simsii HOM05D000756 ORTHO05D000604 1.3e-12 77.4 160 40.0
MSTRG.18220 Avicennia marina HOM05D005179 ORTHO05D006225 1.7e-12 77.0 150 43.3
Gorai.007G135300 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.7e-12 77.0 172 36.6
Lj1g0021337 Lotus japonicus HOM05D005179 ORTHO05D006225 1.7e-12 77.0 181 38.1
Lalb_Chr01g0020211 Lupinus albus HOM05D005179 ORTHO05D006225 1.7e-12 77.0 183 43.2
Prupe.8G243700 Prunus persica HOM05D005179 ORTHO05D006225 1.7e-12 77.0 176 42.0
Gohir.A11G121400 Gossypium hirsutum HOM05D005179 ORTHO05D006225 2.2e-12 76.6 171 36.3
Aa31LG10G16940 Aethionema arabicum HOM05D005179 ORTHO05D006225 2.9e-12 76.3 51 56.9
DCAR_002746 Daucus carota HOM05D005179 ORTHO05D006225 4.9e-12 75.5 58 50.0
ECA247G2094 Erigeron canadensis HOM05D005179 ORTHO05D006225 4.9e-12 75.5 53 52.8
Gohir.D11G126500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 8.3e-12 74.7 172 36.0
Actinidia00740 Actinidia chinensis HOM05D005179 ORTHO05D006225 1.1e-11 74.3 46 60.9
Sopen09g026600 Solanum pennellii HOM05D005179 ORTHO05D006225 1.1e-11 74.3 181 35.9
THA.LOC104802228 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 1.1e-11 74.3 181 43.1
Aqoxy5G00531 Aquilegia oxysepala HOM05D001530 ORTHO05D003676 1.4e-11 73.9 55 50.9
Ca_09769_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 1.4e-11 73.9 50 50.0
Os07g0655800 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 1.4e-11 73.9 48 60.4
Sabra02G0167400 Salix brachista HOM05D005179 ORTHO05D006225 1.4e-11 73.9 184 28.8
ECA236G2709 Erigeron canadensis HOM05D005179 ORTHO05D006225 1.9e-11 73.6 57 52.6
Eucgr.K03387 Eucalyptus grandis HOM05D005179 ORTHO05D006225 1.9e-11 73.6 152 41.4
Aqoxy2G03259 Aquilegia oxysepala HOM05D005179 ORTHO05D006225 3.2e-11 72.8 200 38.0
HanXRQChr15g0466391 Helianthus annuus HOM05D005179 ORTHO05D006225 3.2e-11 72.8 49 53.1
PSO210G2426 Papaver somniferum HOM05D005179 ORTHO05D006225 3.2e-11 72.8 54 51.9
Psat6g061040 Pisum sativum HOM05D005179 ORTHO05D006225 3.2e-11 72.8 153 34.6
Thecc.01G282700 Theobroma cacao HOM05D005179 ORTHO05D006225 3.2e-11 72.8 184 35.3
VMungo0720G0860 Vigna mungo HOM05D005179 ORTHO05D006225 3.2e-11 72.8 172 27.3
Zm00001eb329500 Zea mays HOM05D005179 ORTHO05D006225 3.2e-11 72.8 48 58.3
FvH4_2g23841 Fragaria vesca HOM05D005179 ORTHO05D006225 4.1e-11 72.4 222 37.8
Oeu028081.1 Olea europaea HOM05D005179 ORTHO05D006225 4.1e-11 72.4 49 57.1
Duzib138G1054 Durio zibethinus HOM05D005179 ORTHO05D006225 5.4e-11 72.0 173 30.1
FAN24G3244 Fragaria x ananassa HOM05D005179 ORTHO05D006225 5.4e-11 72.0 58 46.6
PGSC0003DMG400020123 Solanum tuberosum HOM05D005179 ORTHO05D006225 5.4e-11 72.0 149 42.3
FAN27G1844 Fragaria x ananassa HOM05D005179 ORTHO05D006225 7.0e-11 71.6 220 38.2
Manes.05G074200 Manihot esculenta HOM05D005179 ORTHO05D006225 7.0e-11 71.6 50 52.0
PSO447G0321 Papaver somniferum HOM05D005179 ORTHO05D006225 7.0e-11 71.6 51 52.9
Medtr1g032050 Medicago truncatula HOM05D005179 ORTHO05D006225 9.2e-11 71.2 191 28.3
Medtr1g032400 Medicago truncatula HOM05D005179 ORTHO05D006225 9.2e-11 71.2 191 28.3
Sopen02g023170 Solanum pennellii HOM05D005179 ORTHO05D006225 9.2e-11 71.2 149 40.9
VMungo1383G3409 Vigna mungo HOM05D005179 ORTHO05D006225 9.2e-11 71.2 182 37.4
ClCG09G006920 Citrullus lanatus HOM05D000257 ORTHO05D009070 1.2e-10 70.9 53 43.4
Gohir.A12G005800 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.2e-10 70.9 48 54.2
Gohir.D12G005300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.2e-10 70.9 48 54.2
Gorai.008G005200 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.2e-10 70.9 48 54.2
Gorai.009G014800 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.2e-10 70.9 48 54.2
Sed0008870 Sechium edule HOM05D005179 ORTHO05D006225 1.2e-10 70.9 51 49.0
Zm00001eb017420 Zea mays HOM05D005179 ORTHO05D006225 1.2e-10 70.9 48 58.3
Zm00001eb394420 Zea mays HOM05D005179 ORTHO05D006225 2.0e-10 70.1 48 56.2
MD03G1268100 Malus domestica HOM05D005179 ORTHO05D006225 2.7e-10 69.7 149 41.6
Manes.01G209200 Manihot esculenta HOM05D005179 ORTHO05D006225 3.5e-10 69.3 48 54.2
Phvul.007G170000 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 3.5e-10 69.3 178 25.8
TWI59G0379 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 4.6e-10 68.9 200 41.5
Glyma.02G148700 Glycine max HOM05D005179 ORTHO05D006225 6.0e-10 68.6 50 46.0
Os03g0357500 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 7.8e-10 68.2 48 52.1
arahy.Tifrunner.gnm1.ann1.AZF37F Arachis hypogaea HOM05D000257 ORTHO05D009070 1.3e-09 67.4 179 35.2
arahy.Tifrunner.gnm1.ann1.YN028F Arachis hypogaea HOM05D000257 ORTHO05D009070 1.3e-09 67.4 179 35.2
CAN.G609.9 Capsicum annuum HOM05D005179 ORTHO05D006225 1.3e-09 67.4 177 35.6
ClCG07G000210 Citrullus lanatus HOM05D005179 ORTHO05D006225 1.3e-09 67.4 54 46.3
Nn1g02158 Nelumbo nucifera HOM05D005179 ORTHO05D006225 1.3e-09 67.4 48 50.0
Sed0008634 Sechium edule HOM05D005179 ORTHO05D006225 1.3e-09 67.4 51 43.1
Psat3g065120 Pisum sativum HOM05D005179 ORTHO05D006225 1.7e-09 67.0 189 33.3
MD11G1289000 Malus domestica HOM05D000257 ORTHO05D009070 5.0e-09 65.5 169 35.5
Sed0002169 Sechium edule HOM05D005179 ORTHO05D006225 6.6e-09 65.1 54 42.6
Gorai.004G082400 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.5e-08 63.9 48 52.1
Nn4g26188 Nelumbo nucifera HOM05D005179 ORTHO05D006225 1.5e-08 63.9 182 35.7
CsaV3_7G028640 Cucumis sativus L. HOM05D005179 ORTHO05D006225 1.9e-08 63.5 181 37.0
HPP92_008197 Vanilla planifolia HOM05D024720 ORTHO05D006225 1.9e-08 63.5 48 47.9
Migut.N02158 Erythranthe guttata HOM05D005179 ORTHO05D006225 5.6e-08 62.0 153 37.3
Glyma.10G025200 Glycine max HOM05D005179 ORTHO05D006225 5.6e-08 62.0 191 31.4
FAN15G0349 Fragaria x ananassa HOM05D005179 ORTHO05D006225 7.3e-08 61.6 221 35.7
FAN15G1538 Fragaria x ananassa HOM05D005179 ORTHO05D006225 7.3e-08 61.6 221 35.7
CiPaw.07G093600 Carya illinoinensis HOM05D005179 ORTHO05D006225 1.2e-07 60.8 161 36.6
MELO3C015854.2 Cucumis melo HOM05D005179 ORTHO05D006225 1.2e-07 60.8 183 37.2
Gohir.A08G069300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 2.1e-07 60.1 51 43.1
Gohir.D08G077500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 2.8e-07 59.7 178 34.8
ATR0626G310 Amborella trichopoda HOM05D005179 ORTHO05D006225 3.6e-07 59.3 174 35.6
vmacro14931 Vaccinium macrocarpon HOM05D001530 ORTHO05D003676 8.0e-07 58.2 144 37.5
CiPaw.08G103900 Carya illinoinensis HOM05D005179 ORTHO05D006225 1.4e-06 57.4 194 26.3
Zm00001eb042810 Zea mays HOM05D024720 ORTHO05D030308 1.4e-06 57.4 62 40.3
Gohir.A08G069200 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.8e-06 57.0 47 46.8
Gohir.D08G077600 Gossypium hirsutum HOM05D005179 ORTHO05D006225 2.3e-06 56.6 153 32.0
Os08g0360700 Oryza sativa ssp. japonica HOM05D024720 ORTHO05D030308 4.0e-06 55.8 49 42.9
Cfa006114 Carpinus fangiana HOM05D005179 ORTHO05D006225 8.9e-06 54.7 53 39.6
Haze_04736 Corylus avellana HOM05D005179 ORTHO05D006225 8.9e-06 54.7 185 30.3


User provided reference genes

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