Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0023100 Rhododendron simsii HOM05D011626 ORTHO05D012023 1.7e-165 585.9 287 100.0
Rhsim13G0023000 Rhododendron simsii HOM05D000520 ORTHO05D012023 3.8e-24 116.3 150 48.0
Dinv03052 Davidia involucrata HOM05D000790 ORTHO05D000769 5.9e-17 92.4 144 36.8
Rhsim13G0022900 Rhododendron simsii HOM05D000520 ORTHO05D012023 1.0e-13 81.6 103 45.6
Nitab4.5_0006489g0070 Nicotiana tabacum HOM05D011626 ORTHO05D012023 2.9e-11 73.6 157 29.9
Actinidia02953 Actinidia chinensis HOM05D000520 ORTHO05D012023 6.4e-11 72.4 145 33.1
Cc02_g07920 Coffea canephora HOM05D011626 ORTHO05D012023 1.1e-10 71.6 157 31.8
PGSC0003DMG400013677 Solanum tuberosum HOM05D011626 ORTHO05D012023 1.4e-10 71.2 154 31.8
PGSC0003DMG400023529 Solanum tuberosum HOM05D011626 ORTHO05D012023 1.6e-09 67.8 130 36.2
DCAR_011690 Daucus carota HOM05D000520 ORTHO05D012023 2.7e-09 67.0 132 33.3
Migut.F00138 Erythranthe guttata HOM05D000473 ORTHO05D006020 6.0e-09 65.9 189 29.1
MD02G1236600 Malus domestica HOM05D000473 ORTHO05D009707 7.8e-09 65.5 174 27.6
Nitab4.5_0000021g0060 Nicotiana tabacum HOM05D000473 ORTHO05D006020 1.3e-08 64.7 193 28.0
Nitab4.5_0004654g0030 Nicotiana tabacum HOM05D000473 ORTHO05D006020 1.3e-08 64.7 193 28.0
Peaxi162Scf01447g00016 Petunia axillaris HOM05D000473 ORTHO05D006020 3.0e-08 63.5 193 27.5
Sopen03g021830 Solanum pennellii HOM05D000473 ORTHO05D006020 3.0e-08 63.5 187 28.3
PGSC0003DMG400000556 Solanum tuberosum HOM05D000473 ORTHO05D006020 3.0e-08 63.5 187 28.3
Actinidia08708 Actinidia chinensis HOM05D000473 ORTHO05D006020 3.9e-08 63.2 178 27.5
Oeu037982.1 Olea europaea HOM05D000473 ORTHO05D006020 3.9e-08 63.2 193 29.0
Duzib084G0795 Durio zibethinus HOM05D000473 ORTHO05D006020 5.0e-08 62.8 179 27.4
Hma1.2p1_0466F.1_g158510 Hydrangea macrophylla HOM05D000473 ORTHO05D009707 5.0e-08 62.8 204 27.5
Nitab4.5_0006095g0020 Nicotiana tabacum HOM05D011626 ORTHO05D012023 5.0e-08 62.8 153 28.1
Sabra12G0004300 Salix brachista HOM05D000010 ORTHO05D006020 5.0e-08 62.8 187 27.8
CAN.G303.42 Capsicum annuum HOM05D000473 ORTHO05D006020 6.6e-08 62.4 187 28.3
Sabra12G0008800 Salix brachista HOM05D000010 ORTHO05D006020 6.6e-08 62.4 187 28.3
Solyc03g080100.4 Solanum lycopersicum HOM05D000473 ORTHO05D006020 6.6e-08 62.4 187 28.3
MSTRG.21832 Avicennia marina HOM05D000520 ORTHO05D000399 8.6e-08 62.0 70 44.3
QL04p023034 Quercus lobata HOM05D000473 ORTHO05D009707 8.6e-08 62.0 173 24.3
vmacro06455 Vaccinium macrocarpon HOM05D000473 ORTHO05D006020 8.6e-08 62.0 184 28.8
Aqoxy5G04365 Aquilegia oxysepala HOM05D000473 ORTHO05D006020 1.1e-07 61.6 174 27.0
Thecc.03G210200 Theobroma cacao HOM05D000473 ORTHO05D006020 1.1e-07 61.6 173 28.3
Atru.chr13.1890 Acer truncatum HOM05D000520 ORTHO05D000399 1.5e-07 61.2 117 33.3
FAN03G0590 Fragaria x ananassa HOM05D000473 ORTHO05D006020 1.5e-07 61.2 187 28.9
FAN06G4525 Fragaria x ananassa HOM05D000473 ORTHO05D009707 1.5e-07 61.2 172 27.9
Potri.010G175800 Populus trichocarpa HOM05D000520 ORTHO05D023685 1.5e-07 61.2 125 36.0
Cc02_g00720 Coffea canephora HOM05D000473 ORTHO05D006020 1.9e-07 60.8 187 27.3
Actinidia23478 Actinidia chinensis HOM05D000520 ORTHO05D000399 3.3e-07 60.1 89 41.6
FAN10G3144 Fragaria x ananassa HOM05D000473 ORTHO05D006020 3.3e-07 60.1 187 28.9
HanXRQChr14g0446381 Helianthus annuus HOM05D000520 ORTHO05D000399 4.3e-07 59.7 132 31.1
Aa31LG11G3810 Aethionema arabicum HOM05D000473 ORTHO05D006020 5.6e-07 59.3 173 26.0
MSTRG.8600 Avicennia marina HOM05D000473 ORTHO05D006020 5.6e-07 59.3 190 27.4
DCAR_024583 Daucus carota HOM05D000520 ORTHO05D000399 5.6e-07 59.3 73 42.5
Dinv17290 Davidia involucrata HOM05D000473 ORTHO05D006020 5.6e-07 59.3 202 26.7
FAN01G1919 Fragaria x ananassa HOM05D000473 ORTHO05D006020 5.6e-07 59.3 187 27.8
SGA_v2.0_scaffold18G08479 Striga asiatica HOM05D000473 ORTHO05D006020 5.6e-07 59.3 191 27.2
arahy.Tifrunner.gnm1.ann1.K1C9AI Arachis hypogaea HOM05D000520 ORTHO05D000399 7.3e-07 58.9 77 42.9
Hma1.2p1_1362F.1_g278200 Hydrangea macrophylla HOM05D000520 ORTHO05D000399 7.3e-07 58.9 57 49.1
Lsat_1_v5_gn_8_3921 Lactuca sativa HOM05D000617 ORTHO05D000478 7.3e-07 58.9 174 28.2
MD01G1229700 Malus domestica HOM05D000473 ORTHO05D006020 7.3e-07 58.9 185 28.6
QL03p004617 Quercus lobata HOM05D000520 ORTHO05D000399 7.3e-07 58.9 60 46.7
QL03p004799 Quercus lobata HOM05D002900 ORTHO05D003238 7.3e-07 58.9 60 46.7
CSS0030649 Camellia sinensis var. sinensis HOM05D000473 ORTHO05D006020 9.5e-07 58.5 170 28.2
Dinv29202 Davidia involucrata HOM05D000473 ORTHO05D006020 9.5e-07 58.5 190 27.9
Sed0003129 Sechium edule HOM05D000520 ORTHO05D000399 9.5e-07 58.5 72 40.3
Sc09g0003280 Simmondsia chinensis HOM05D000520 ORTHO05D000399 9.5e-07 58.5 62 43.5
Duzib212G0287 Durio zibethinus HOM05D000520 ORTHO05D000399 1.2e-06 58.2 70 44.3
FvH4_7g33060 Fragaria vesca HOM05D000473 ORTHO05D006020 1.2e-06 58.2 187 27.3
FAN02G0264 Fragaria x ananassa HOM05D000520 ORTHO05D000399 1.2e-06 58.2 60 46.7
FAN05G0808 Fragaria x ananassa HOM05D000520 ORTHO05D000399 1.2e-06 58.2 60 46.7
FAN05G4392 Fragaria x ananassa HOM05D000520 ORTHO05D000399 1.2e-06 58.2 60 46.7
FAN09G4603 Fragaria x ananassa HOM05D000520 ORTHO05D000399 1.2e-06 58.2 60 46.7
RcHm_v2.0_Chr1g0341261 Rosa chinensis HOM05D000473 ORTHO05D009707 1.2e-06 58.2 172 26.2
RcHm_v2.0_Chr1g0383071 Rosa chinensis HOM05D000473 ORTHO05D006020 1.2e-06 58.2 184 27.7
FvH4_6g05480 Fragaria vesca HOM05D000520 ORTHO05D000399 1.6e-06 57.8 60 45.0
FvH4_7g08060 Fragaria vesca HOM05D000473 ORTHO05D009707 1.6e-06 57.8 173 26.0
FAN03G2202 Fragaria x ananassa HOM05D000473 ORTHO05D009707 1.6e-06 57.8 173 26.0
FAN14G3702 Fragaria x ananassa HOM05D000520 ORTHO05D000399 1.6e-06 57.8 60 45.0
FAN14G5262 Fragaria x ananassa HOM05D000520 ORTHO05D000399 1.6e-06 57.8 60 45.0
Gohir.A12G245500 Gossypium hirsutum HOM05D000473 ORTHO05D006020 1.6e-06 57.8 170 27.1
Gohir.D04G000025 Gossypium hirsutum HOM05D000473 ORTHO05D006020 1.6e-06 57.8 179 26.8
Gohir.D04G000400 Gossypium hirsutum HOM05D000473 ORTHO05D006020 1.6e-06 57.8 179 26.8
Gorai.012G001300 Gossypium raimondii HOM05D000473 ORTHO05D006020 1.6e-06 57.8 179 26.8
Nitab4.5_0001233g0080 Nicotiana tabacum HOM05D011626 ORTHO05D012023 1.6e-06 57.8 141 29.1
QL09p006741 Quercus lobata HOM05D000473 ORTHO05D006020 1.6e-06 57.8 189 28.0
TWI23G0379 Tripterygium wilfordii HOM05D000520 ORTHO05D000399 1.6e-06 57.8 146 32.2
EL10Ac3g06363 Beta vulgaris HOM05D000520 ORTHO05D000399 2.1e-06 57.4 69 43.5
Ciclev10000747m.g Citrus clementina HOM05D000520 ORTHO05D000399 2.1e-06 57.4 69 43.5
Gohir.D12G246300 Gossypium hirsutum HOM05D000473 ORTHO05D006020 2.1e-06 57.4 173 26.6
Gorai.008G263900 Gossypium raimondii HOM05D000473 ORTHO05D006020 2.1e-06 57.4 173 26.6
MD07G1301700 Malus domestica HOM05D000473 ORTHO05D006020 2.1e-06 57.4 184 27.2
Prupe.1G151700 Prunus persica HOM05D000520 ORTHO05D000399 2.1e-06 57.4 72 43.1
Prupe.2G320300 Prunus persica HOM05D000473 ORTHO05D006020 2.1e-06 57.4 187 26.7
Thecc.05G306700 Theobroma cacao HOM05D000520 ORTHO05D000399 2.1e-06 57.4 62 48.4
Sed0025184 Sechium edule HOM05D000520 ORTHO05D000399 2.8e-06 57.0 72 38.9
TPR.G20123 Trifolium pratense HOM05D000520 ORTHO05D000399 2.8e-06 57.0 69 43.5
Actinidia40190 Actinidia chinensis HOM05D000520 ORTHO05D000399 3.6e-06 56.6 70 42.9
ClCG03G016850 Citrullus lanatus HOM05D000520 ORTHO05D000399 3.6e-06 56.6 72 38.9
COL.COLO4_09124 Corchorus olitorius HOM05D000520 ORTHO05D023685 3.6e-06 56.6 132 28.0
Eucgr.H03592 Eucalyptus grandis HOM05D000520 ORTHO05D000399 3.6e-06 56.6 70 41.4
FAN22G0660 Fragaria x ananassa HOM05D000520 ORTHO05D000399 3.6e-06 56.6 70 42.9
Lalb_Chr20g0118441 Lupinus albus HOM05D000520 ORTHO05D000399 3.6e-06 56.6 69 43.5
Manes.01G044400 Manihot esculenta HOM05D000473 ORTHO05D006020 3.6e-06 56.6 187 27.3
Oeu060380.1 Olea europaea HOM05D000520 ORTHO05D000399 3.6e-06 56.6 70 41.4
Phvul.003G092500 Phaseolus vulgaris HOM05D000520 ORTHO05D000399 3.6e-06 56.6 75 41.3
Potri.012G007300 Populus trichocarpa HOM05D000473 ORTHO05D006020 3.6e-06 56.6 184 27.2
PGR042G1852 Punica granatum HOM05D000473 ORTHO05D006020 3.6e-06 56.6 176 27.8
RcHm_v2.0_Chr3g0454261 Rosa chinensis HOM05D000520 ORTHO05D000399 3.6e-06 56.6 60 46.7
Sc19g0000490 Simmondsia chinensis HOM05D000473 ORTHO05D006020 3.6e-06 56.6 173 26.0
GSVIVG01038662001 Vitis vinifera HOM05D000473 ORTHO05D006020 3.6e-06 56.6 180 26.7
arahy.Tifrunner.gnm1.ann1.S51AWQ Arachis hypogaea HOM05D000520 ORTHO05D000399 4.7e-06 56.2 77 41.6
BcaNung01244 Brassica carinata HOM05D000473 ORTHO05D006020 4.7e-06 56.2 179 25.1
CSS0042599 Camellia sinensis var. sinensis HOM05D000520 ORTHO05D000399 4.7e-06 56.2 69 40.6
CSS0050336 Camellia sinensis var. sinensis HOM05D000520 ORTHO05D000399 4.7e-06 56.2 69 40.6
Cc03_g03140 Coffea canephora HOM05D000520 ORTHO05D000399 4.7e-06 56.2 70 42.9
Dinv38396 Davidia involucrata HOM05D000520 ORTHO05D000399 4.7e-06 56.2 72 41.7
Hma1.2p1_0094F.1_g047480 Hydrangea macrophylla HOM05D000473 ORTHO05D006020 4.7e-06 56.2 191 26.7
Lalb_Chr13g0304121 Lupinus albus HOM05D000520 ORTHO05D000399 4.7e-06 56.2 70 42.9
Rhsim03G0216900 Rhododendron simsii HOM05D000473 ORTHO05D006020 4.7e-06 56.2 184 26.6
Sc19g0004510 Simmondsia chinensis HOM05D000520 ORTHO05D000399 4.7e-06 56.2 72 40.3
Atru.chr12.2486 Acer truncatum HOM05D000473 ORTHO05D006020 6.2e-06 55.8 187 27.3
Dinv44482 Davidia involucrata HOM05D000520 ORTHO05D000399 6.2e-06 55.8 73 41.1
Glyma.10G156100 Glycine max HOM05D000520 ORTHO05D000399 6.2e-06 55.8 60 43.3
Lalb_Chr04g0252491 Lupinus albus HOM05D000473 ORTHO05D006020 6.2e-06 55.8 183 25.1
Manes.08G122800 Manihot esculenta HOM05D000520 ORTHO05D000399 6.2e-06 55.8 62 43.5
Medtr2g022250 Medicago truncatula HOM05D000520 ORTHO05D000399 6.2e-06 55.8 77 39.0
PGR083G2404 Punica granatum HOM05D000473 ORTHO05D009707 6.2e-06 55.8 212 24.5
ATR0626G212 Amborella trichopoda HOM05D000520 ORTHO05D000399 8.0e-06 55.5 66 42.4
AL6G36180 Arabidopsis lyrata HOM05D000473 ORTHO05D006020 8.0e-06 55.5 177 26.0
BraA02t08989Z Brassica rapa HOM05D000473 ORTHO05D006020 8.0e-06 55.5 173 26.6
Cfa006554 Carpinus fangiana HOM05D000520 ORTHO05D000399 8.0e-06 55.5 74 39.2
COL.COLO4_13507 Corchorus olitorius HOM05D000416 ORTHO05D000322 8.0e-06 55.5 62 45.2
Duzib128G1162 Durio zibethinus HOM05D000520 ORTHO05D000399 8.0e-06 55.5 63 44.4
Glyma.20G232200 Glycine max HOM05D000520 ORTHO05D000399 8.0e-06 55.5 60 43.3
Lalb_Chr04g0252481 Lupinus albus HOM05D000473 ORTHO05D006020 8.0e-06 55.5 163 27.6
Manes.09G164500 Manihot esculenta HOM05D000520 ORTHO05D000399 8.0e-06 55.5 80 41.2
Medtr3g093020 Medicago truncatula HOM05D000473 ORTHO05D006020 8.0e-06 55.5 177 27.1
Medtr4g117140 Medicago truncatula HOM05D000520 ORTHO05D000399 8.0e-06 55.5 69 43.5
Medtr4g117220 Medicago truncatula HOM05D000520 ORTHO05D000399 8.0e-06 55.5 69 43.5
Peaxi162Scf00196g01022 Petunia axillaris HOM05D000520 ORTHO05D000399 8.0e-06 55.5 72 41.7
TWI09G0069 Tripterygium wilfordii HOM05D000520 ORTHO05D000399 8.0e-06 55.5 69 42.0
TWI59G0462 Tripterygium wilfordii HOM05D000473 ORTHO05D009707 8.0e-06 55.5 190 23.2


User provided reference genes

Program Settings