Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0019400 Rhododendron simsii HOM05D011829 ORTHO05D011279 0.0e+00 1141.7 1028 100.0
Rhsim08G0165200 Rhododendron simsii HOM05D011829 ORTHO05D011279 1.7e-90 338.6 481 74.8
Rhsim13G0019500 Rhododendron simsii HOM05D011829 ORTHO05D011279 7.0e-68 263.5 459 61.2
Rhsim13G0019300 Rhododendron simsii HOM05D011829 ORTHO05D011279 1.2e-64 252.7 149 85.2
Rhsim08G0166000 Rhododendron simsii HOM05D011829 ORTHO05D011279 1.5e-57 229.2 137 78.8
vmacro05380 Vaccinium macrocarpon HOM05D011829 ORTHO05D011279 1.5e-57 229.2 148 74.3
Rhsim13G0019900 Rhododendron simsii HOM05D011829 ORTHO05D011279 1.3e-53 216.1 625 52.3
Rhsim13G0019800 Rhododendron simsii HOM05D011829 ORTHO05D011279 7.2e-49 200.3 470 64.9
Rhsim13G0019700 Rhododendron simsii HOM05D011829 ORTHO05D011279 1.2e-35 156.4 410 51.7
Rhsim13G0019600 Rhododendron simsii HOM05D011829 ORTHO05D011279 2.0e-30 139.0 384 51.8
Rhsim08G0165300 Rhododendron simsii HOM05D000005 ORTHO05D000012 2.1e-27 129.0 206 37.9
vmacro02526 Vaccinium macrocarpon HOM05D000005 ORTHO05D011279 8.9e-23 113.6 83 72.3
vmacro02527 Vaccinium macrocarpon HOM05D011829 ORTHO05D011279 3.6e-16 91.7 76 65.8
Actinidia00712 Actinidia chinensis HOM05D000005 ORTHO05D000012 8.1e-16 90.5 70 67.1
Rhsim01G0104100 Rhododendron simsii HOM05D010378 ORTHO05D011279 8.1e-16 90.5 61 70.5
Rhsim13G0020000 Rhododendron simsii HOM05D011829 ORTHO05D011279 1.8e-15 89.4 78 62.8
RhsimUnG0238200 Rhododendron simsii HOM05D010378 ORTHO05D011279 3.1e-15 88.6 61 68.9
Rhsim01G0099900 Rhododendron simsii HOM05D010378 ORTHO05D011279 1.5e-14 86.3 61 65.6
CSS0039504 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 8.4e-13 80.5 77 61.0
Nn8g41080 Nelumbo nucifera HOM05D000005 ORTHO05D000012 8.4e-13 80.5 206 29.1
Rhsim01G0101900 Rhododendron simsii HOM05D010378 ORTHO05D011279 1.9e-12 79.3 75 56.0
Rhsim01G0104500 Rhododendron simsii HOM05D010378 ORTHO05D011279 3.2e-12 78.6 61 62.3
Rhsim08G0166100 Rhododendron simsii HOM05D011829 ORTHO05D011279 9.3e-12 77.0 40 90.0
Nn8g40948 Nelumbo nucifera HOM05D000005 ORTHO05D000012 1.3e-10 73.2 157 32.5
TWI53G0929 Tripterygium wilfordii HOM05D000005 ORTHO05D000012 1.3e-10 73.2 148 27.7
Rhsim01G0093000 Rhododendron simsii HOM05D010378 ORTHO05D011279 3.9e-10 71.6 95 47.4
Potri.007G099700 Populus trichocarpa HOM05D000005 ORTHO05D000012 8.7e-10 70.5 158 31.0
Rhsim01G0096000 Rhododendron simsii HOM05D010378 ORTHO05D011279 1.5e-09 69.7 51 64.7
Rhsim04G0017200 Rhododendron simsii HOM05D010378 ORTHO05D011279 1.3e-08 66.6 48 66.7
QL04p089183 Quercus lobata HOM05D000005 ORTHO05D000012 1.6e-08 66.2 148 33.1
Dinv27194 Davidia involucrata HOM05D009617 ORTHO05D010313 2.8e-08 65.5 140 28.6
QL12p039308 Quercus lobata HOM05D020723 ORTHO05D022460 3.6e-08 65.1 131 29.8
Rhsim01G0098900 Rhododendron simsii HOM05D010378 ORTHO05D011279 3.6e-08 65.1 46 65.2
Dinv20734 Davidia involucrata HOM05D000005 ORTHO05D000012 4.8e-08 64.7 81 49.4
QL09p019666 Quercus lobata HOM05D000005 ORTHO05D000012 4.8e-08 64.7 232 27.2
Rhsim01G0099300 Rhododendron simsii HOM05D010378 ORTHO05D011279 4.8e-08 64.7 45 68.9
Nn8g40999 Nelumbo nucifera HOM05D000005 ORTHO05D000012 1.1e-07 63.5 227 26.9
Dinv01986 Davidia involucrata HOM05D000005 ORTHO05D000012 1.4e-07 63.2 81 48.1
Cpa.g.sc27.17 Carica papaya HOM05D000005 ORTHO05D000012 1.8e-07 62.8 221 25.8
Nn3g20282 Nelumbo nucifera HOM05D000005 ORTHO05D000012 1.8e-07 62.8 150 31.3
RcHm_v2.0_Chr4g0405381 Rosa chinensis HOM05D000005 ORTHO05D000012 1.8e-07 62.8 153 30.7
QL05p031496 Quercus lobata HOM05D000005 ORTHO05D000012 2.4e-07 62.4 151 30.5
Lj8C311T2 Lonicera japonica HOM05D009617 ORTHO05D010313 4.0e-07 61.6 210 24.3
Rhsim01G0093300 Rhododendron simsii HOM05D010378 ORTHO05D011279 6.9e-07 60.8 79 45.6
CSS0003061 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 9.0e-07 60.5 83 48.2
Rhsim01G0095800 Rhododendron simsii HOM05D010378 ORTHO05D011279 9.0e-07 60.5 46 60.9
Manes.02G205900 Manihot esculenta HOM05D000005 ORTHO05D000012 1.2e-06 60.1 237 25.7
Sopen01g045290 Solanum pennellii HOM05D000005 ORTHO05D000012 1.2e-06 60.1 172 24.4
MD05G1022800 Malus domestica HOM05D000005 ORTHO05D000012 1.5e-06 59.7 81 43.2
Solyc01g102880.3 Solanum lycopersicum HOM05D000005 ORTHO05D000012 1.5e-06 59.7 172 24.4
COL.COLO4_17385 Corchorus olitorius HOM05D000005 ORTHO05D000012 2.6e-06 58.9 152 27.6
Dinv25475 Davidia involucrata HOM05D000005 ORTHO05D000012 2.6e-06 58.9 65 50.8
TPR.G2464 Trifolium pratense HOM05D000005 ORTHO05D000012 2.6e-06 58.9 69 49.3
Ciclev10018578m.g Citrus clementina HOM05D000005 ORTHO05D000012 3.4e-06 58.5 243 25.9
Ciclev10024507m.g Citrus clementina HOM05D000005 ORTHO05D000012 3.4e-06 58.5 170 27.1
RcHm_v2.0_Chr6g0250201 Rosa chinensis HOM05D000005 ORTHO05D000012 4.4e-06 58.2 226 24.8
QL09p043498 Quercus lobata HOM05D000005 ORTHO05D000012 5.8e-06 57.8 87 41.4
Rhsim02G0137300 Rhododendron simsii HOM05D010378 ORTHO05D011279 5.8e-06 57.8 42 64.3
Dinv22128 Davidia involucrata HOM05D000005 ORTHO05D000012 7.6e-06 57.4 80 42.5
Duzib268G1802 Durio zibethinus HOM05D000005 ORTHO05D000012 7.6e-06 57.4 149 26.8
CSS0037441 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 9.9e-06 57.0 161 27.3
Medtr3g080460 Medicago truncatula HOM05D000005 ORTHO05D000012 9.9e-06 57.0 69 49.3
QL05p031759 Quercus lobata HOM05D000005 ORTHO05D000012 9.9e-06 57.0 71 43.7


User provided reference genes

Program Settings