Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0018300 Rhododendron simsii HOM05D004682 ORTHO05D006197 0.0e+00 2452.6 1294 100.0
vmacro02515 Vaccinium macrocarpon HOM05D004682 ORTHO05D006197 0.0e+00 1931.0 1321 79.7
Actinidia00705 Actinidia chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1756.1 1204 78.6
CSS0044691 Camellia sinensis var. sinensis HOM05D004682 ORTHO05D006197 0.0e+00 1751.5 1219 77.4
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 0.0e+00 1683.3 1218 75.8
Hma1.2p1_0399F.1_g144320 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 0.0e+00 1656.7 1198 72.6
GSVIVG01011020001 Vitis vinifera HOM05D004682 ORTHO05D006197 0.0e+00 1642.5 1219 73.7
CiPaw.07G098500 Carya illinoinensis HOM05D004682 ORTHO05D006197 0.0e+00 1609.0 1217 71.1
QL12p023658 Quercus lobata HOM05D004682 ORTHO05D006197 0.0e+00 1599.7 1217 70.9
TAR633G2734 Trochodendron aralioides HOM05D004682 ORTHO05D006197 0.0e+00 1597.8 1225 71.8
Ciclev10018593m.g Citrus clementina HOM05D004682 ORTHO05D006197 0.0e+00 1563.5 1201 71.1
Thecc.01G288600 Theobroma cacao HOM05D004682 ORTHO05D006197 0.0e+00 1561.6 1216 70.6
Duzib138G0788 Durio zibethinus HOM05D004682 ORTHO05D006197 0.0e+00 1552.7 1214 69.1
Nn3g21239 Nelumbo nucifera HOM05D004682 ORTHO05D006197 0.0e+00 1538.5 1204 68.9
Haze_04797 Corylus avellana HOM05D004682 ORTHO05D006197 0.0e+00 1532.7 1031 76.6
Cc01_g20100 Coffea canephora HOM05D004682 ORTHO05D006197 0.0e+00 1531.9 1224 69.2
Sed0020737 Sechium edule HOM05D004682 ORTHO05D006197 0.0e+00 1518.8 1217 68.5
Manes.01G212500 Manihot esculenta HOM05D004682 ORTHO05D006197 0.0e+00 1514.2 1145 72.3
CsaV3_1G038120 Cucumis sativus L. HOM05D004682 ORTHO05D006197 0.0e+00 1513.0 1193 68.5
Gohir.A11G118700 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1511.9 1194 67.6
Gohir.D11G123600 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1510.4 1196 68.8
Eucgr.K03425 Eucalyptus grandis HOM05D004682 ORTHO05D006197 0.0e+00 1508.0 1205 68.2
Potri.002G230800 Populus trichocarpa HOM05D004682 ORTHO05D006197 0.0e+00 1504.2 1183 70.0
Gorai.007G132500 Gossypium raimondii HOM05D004682 ORTHO05D006197 0.0e+00 1501.1 1196 68.5
Prupe.8G250900 Prunus persica HOM05D004682 ORTHO05D006197 0.0e+00 1492.2 1185 68.6
Oeu002696.1 Olea europaea HOM05D004682 ORTHO05D006197 0.0e+00 1475.3 1322 61.1
PGR044G1334 Punica granatum HOM05D004682 ORTHO05D006197 0.0e+00 1470.3 1188 67.8
DCAR_018370 Daucus carota HOM05D004682 ORTHO05D006197 0.0e+00 1469.5 1222 67.8
Sabra02G0176000 Salix brachista HOM05D004682 ORTHO05D006197 0.0e+00 1459.9 1091 72.3
MBI19_g27957_MAGBIO Magnolia biondii HOM05D004682 ORTHO05D006197 0.0e+00 1459.1 1240 65.6
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 0.0e+00 1449.5 1137 67.9
CANSAT25G1381 Cannabis sativa HOM05D004682 ORTHO05D006197 0.0e+00 1449.1 1206 65.4
MD11G1296700 Malus domestica HOM05D004682 ORTHO05D006197 0.0e+00 1442.6 1187 66.6
Lj2A1184G69 Lonicera japonica HOM05D004682 ORTHO05D006197 0.0e+00 1434.5 1057 71.3
arahy.Tifrunner.gnm1.ann1.SJK0SQ Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1431.0 1218 63.4
Lj1g0026346 Lotus japonicus HOM05D004682 ORTHO05D006197 0.0e+00 1429.5 1196 65.8
RcHm_v2.0_Chr6g0292391 Rosa chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1428.7 1190 67.1
Sopen05g022990 Solanum pennellii HOM05D004682 ORTHO05D006197 0.0e+00 1427.9 1191 63.3
Aqoxy2G03153 Aquilegia oxysepala HOM05D004682 ORTHO05D006197 0.0e+00 1426.8 1223 63.5
MSTRG.18200 Avicennia marina HOM05D004682 ORTHO05D006197 0.0e+00 1421.0 1210 62.6
Ca_09103_v3 Cicer arietinum L. HOM05D004682 ORTHO05D006197 0.0e+00 1419.1 1220 62.5
Solyc05g026510.4 Solanum lycopersicum HOM05D004682 ORTHO05D006197 0.0e+00 1418.3 1206 62.6
CAN.G13.21 Capsicum annuum HOM05D004682 ORTHO05D006197 0.0e+00 1415.6 1190 63.0
FvH4_2g24570 Fragaria vesca HOM05D004682 ORTHO05D006197 0.0e+00 1412.9 1192 66.4
CDE05G1251 Ceratophyllum demersum HOM05D004682 ORTHO05D006197 0.0e+00 1412.1 1141 67.1
VMungo1383G2773 Vigna mungo HOM05D004682 ORTHO05D006197 0.0e+00 1407.5 1221 62.2
Glyma.03G207600 Glycine max HOM05D004682 ORTHO05D006197 0.0e+00 1407.1 1220 63.3
FAN15G3206 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1406.0 1193 66.1
FAN24G1905 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1406.0 1193 66.1
FAN27G0404 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1405.2 1193 66.2
AUR62026692 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1402.9 1148 64.5
Lalb_Chr20g0111011 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1399.8 1188 63.9
PSO170G5080 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1399.8 1081 68.3
arahy.Tifrunner.gnm1.ann1.BJ6WT1 Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1397.5 1218 62.5
Migut.D00237 Erythranthe guttata HOM05D004682 ORTHO05D006197 0.0e+00 1397.5 1080 67.9
PSO407G0071 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1395.9 1147 67.2
Atru.chr5.1294 Acer truncatum HOM05D004682 ORTHO05D006197 0.0e+00 1392.5 1220 64.3
HanXRQChr10g0283031 Helianthus annuus HOM05D004682 ORTHO05D006197 0.0e+00 1390.6 1060 69.2
Phvul.001G201200 Phaseolus vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1388.2 1219 61.7
AUR62013599 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1377.1 1196 61.8
SalBow3G2371 Salvia bowleyana HOM05D004682 ORTHO05D006197 0.0e+00 1374.4 1238 59.7
EL10Ac1g01562 Beta vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1370.9 1179 64.1
FAN20G1430 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1368.2 1186 65.1
ECA247G2915 Erigeron canadensis HOM05D004682 ORTHO05D006197 0.0e+00 1366.7 1077 66.1
TPR.G32282 Trifolium pratense HOM05D004682 ORTHO05D006197 0.0e+00 1365.9 1185 62.4
SGA_v2.0_scaffold1G00427 Striga asiatica HOM05D004682 ORTHO05D006197 0.0e+00 1363.6 1223 60.4
Medtr7g107440 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1357.8 1226 61.5
COL.COLO4_08044 Corchorus olitorius HOM05D004682 ORTHO05D006197 0.0e+00 1357.4 1206 64.5
Psat3g025520 Pisum sativum HOM05D004682 ORTHO05D006197 0.0e+00 1355.5 1219 60.0
Ah.05g167980 Amaranthus hybridus HOM05D004682 ORTHO05D006197 0.0e+00 1350.5 1177 63.5
Peaxi162Scf00159g01650 Petunia axillaris HOM05D004682 ORTHO05D006197 0.0e+00 1342.8 1193 61.7
Lsat_1_v5_gn_9_5121 Lactuca sativa HOM05D004682 ORTHO05D006197 0.0e+00 1342.4 1201 61.5
Nitab4.5_0000135g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1341.3 1438 52.8
Nitab4.5_0000282g0030 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1338.2 1154 62.0
THA.LOC104817537 Tarenaya hassleriana HOM05D004682 ORTHO05D006197 0.0e+00 1336.6 1197 62.0
AL4G47570 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1336.2 1054 64.0
Lalb_Chr25g0287581 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1334.7 1124 64.1
TWI59G0906 Tripterygium wilfordii HOM05D004682 ORTHO05D006197 0.0e+00 1333.9 1205 63.7
Thhalv10001288m.g Eutrema salsugineum HOM05D004682 ORTHO05D006197 0.0e+00 1322.0 1058 63.6
AT2G47980 Arabidopsis thaliana HOM05D004682 ORTHO05D006197 0.0e+00 1321.2 1054 63.5
Sp4g29900 Schrenkiella parvula HOM05D004682 ORTHO05D006197 0.0e+00 1313.1 1058 63.6
CARHR143360 Cardamine hirsuta HOM05D004682 ORTHO05D006197 0.0e+00 1308.1 1056 63.4
Aa31LG1G29400 Aethionema arabicum HOM05D004682 ORTHO05D006197 0.0e+00 1306.2 1210 59.3
BcaB02g08728 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1299.6 1054 62.5
Carub.0004s3070 Capsella rubella HOM05D004682 ORTHO05D006197 0.0e+00 1299.6 1054 62.5
Hund18022 Selenicereus undatus HOM05D004682 ORTHO05D006197 0.0e+00 1299.6 1193 61.3
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1285.8 1054 62.0
BcaC02g12533 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1280.8 1056 61.8
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1275.8 1054 61.5
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 0.0e+00 1274.6 1056 61.5
Os05g0188500 Oryza sativa ssp. japonica HOM05D004682 ORTHO05D006197 0.0e+00 1273.5 1060 61.5
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 0.0e+00 1272.7 1066 61.3
MELO3C015235.2 Cucumis melo HOM05D004682 ORTHO05D006197 0.0e+00 1253.8 988 67.9
Medtr1g048130 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1251.5 1007 63.6
ATR0706G112 Amborella trichopoda HOM05D004682 ORTHO05D006197 0.0e+00 1245.0 1023 63.3
Zm00001eb115650 Zea mays HOM05D004682 ORTHO05D006197 0.0e+00 1229.9 1060 58.7
PGSC0003DMG401015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 0.0e+00 1216.1 980 64.8
unitig_22.g5252 Utricularia gibba HOM05D004682 ORTHO05D006197 0.0e+00 1212.2 1164 55.9
SEGI_13218 Sequoiadendron giganteum HOM05D004682 ORTHO05D006197 0.0e+00 1202.6 1039 58.7
AL7G17990 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1201.8 984 61.8
Medtr1g047970 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1199.1 1091 60.5
Potri.014G151400 Populus trichocarpa HOM05D004682 ORTHO05D006197 0.0e+00 1185.2 910 72.0
HPP92_017192 Vanilla planifolia HOM05D004682 ORTHO05D006197 0.0e+00 1128.2 1056 57.8
Cpa.g.sc9.149 Carica papaya HOM05D004682 ORTHO05D006197 0.0e+00 1125.5 1054 57.7
Sc17g0003630 Simmondsia chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1105.9 899 66.2
Hma1.2p1_1049F.1_g251880 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 0.0e+00 1085.1 697 79.1
HPP92_027340 Vanilla planifolia HOM05D004682 ORTHO05D006197 1.1e-307 1060.4 1194 50.9
COL.COLO4_31667 Corchorus olitorius HOM05D004682 ORTHO05D006197 2.4e-307 1059.3 969 58.5
Mapoly0007s0132 Marchantia polymorpha HOM05D004682 ORTHO05D006197 1.1e-296 1023.8 1036 52.2
Pp3c9_5570 Physcomitrium patens HOM05D004682 ORTHO05D006197 1.8e-278 963.4 1033 49.4
SHI14494 Sapria himalayana HOM05D004682 ORTHO05D006197 1.1e-272 944.1 799 62.2
SMO347G0479 Selaginella moellendorffii HOM05D004682 ORTHO05D006197 9.2e-267 924.5 981 48.7
QL12p023612 Quercus lobata HOM05D004682 ORTHO05D006197 1.2e-266 924.1 666 74.5
AagrBONN_evm.TU.Sc2ySwM_369.560 Anthoceros agrestis HOM05D004682 ORTHO05D006197 5.6e-248 862.1 1035 46.4
Hma1.2p1_0399F.1_g144330 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 4.4e-245 852.4 597 74.0
Hma1.2p1_0399F.1_g144310 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 6.2e-239 832.0 617 71.3
Hma1.2p1_1049F.1_g251875 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 6.2e-239 832.0 617 71.3
CBR_g31051 Chara braunii HOM05D004682 ORTHO05D006197 1.6e-207 727.6 1042 41.6
ClCG03G018080 Citrullus lanatus HOM05D004682 ORTHO05D006197 7.5e-152 542.7 461 65.9
Medtr3g050420 Medicago truncatula HOM05D004682 ORTHO05D006197 2.8e-98 364.8 401 52.6
HanXRQChr08g0228671 Helianthus annuus HOM05D004682 ORTHO05D006197 2.6e-64 251.9 201 63.7
Actinidia24288 Actinidia chinensis HOM05D004682 ORTHO05D006197 6.1e-61 240.7 143 82.5
MCO01G509 Micromonas commoda HOM05D004682 ORTHO05D006197 3.7e-58 231.5 624 27.2
PGSC0003DMG402015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 4.2e-54 218.0 208 56.2
ClCG03G018060 Citrullus lanatus HOM05D004682 ORTHO05D006197 1.0e-52 213.4 214 54.2
PSO384G2775 Papaver somniferum HOM05D004682 ORTHO05D006197 5.7e-51 207.6 164 62.8
Thecc.06G206000 Theobroma cacao HOM05D004682 ORTHO05D006197 7.7e-48 197.2 171 61.4
HanXRQChr08g0228681 Helianthus annuus HOM05D004682 ORTHO05D006197 1.6e-40 172.9 187 51.9
PGSC0003DMG400019559 Solanum tuberosum HOM05D004682 ORTHO05D006197 3.8e-39 168.3 174 54.6
Cfa025969 Carpinus fangiana HOM05D004682 ORTHO05D006197 7.2e-38 164.1 635 24.4
Cre17.g736400 Chlamydomonas reinhardtii HOM05D004682 ORTHO05D006197 1.6e-32 146.4 729 23.0
DCAR_030309 Daucus carota HOM05D004682 ORTHO05D006197 3.6e-29 135.2 147 51.7
PGSC0003DMG400006683 Solanum tuberosum HOM05D004682 ORTHO05D006197 5.8e-27 127.9 107 61.7
Medtr5g092930 Medicago truncatula HOM05D004682 ORTHO05D006197 1.2e-24 120.2 96 62.5
PGSC0003DMG400019558 Solanum tuberosum HOM05D004682 ORTHO05D006197 2.0e-24 119.4 108 57.4
RcHm_v2.0_Chr5g0002211 Rosa chinensis HOM05D004682 ORTHO05D029379 2.7e-16 92.4 277 27.4
Medtr5g092920 Medicago truncatula HOM05D036979 ORTHO05D006197 6.8e-12 77.8 302 27.5
Thecc.06G205900 Theobroma cacao HOM05D004682 ORTHO05D006197 6.8e-12 77.8 74 58.1
Medtr7g089690 Medicago truncatula HOM05D004682 ORTHO05D006197 2.0e-11 76.3 68 57.4
Hma1.2p1_1049F.1_g251890 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 4.4e-11 75.1 81 56.8
PGSC0003DMG400017057 Solanum tuberosum HOM05D004682 ORTHO05D005906 5.8e-11 74.7 50 62.0
Solyc05g021530.3 Solanum lycopersicum HOM05D025699 ORTHO05D026176 1.4e-09 70.1 85 47.1
PGSC0003DMG400017058 Solanum tuberosum HOM05D004682 ORTHO05D026186 7.1e-09 67.8 73 50.7
PGSC0003DMG400005432 Solanum tuberosum HOM05D004682 ORTHO05D003903 3.5e-08 65.5 48 66.7
Solyc09g037030.2 Solanum lycopersicum HOM05D020974 ORTHO05D023151 8.6e-07 60.8 124 36.3


User provided reference genes

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