Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0013000 Rhododendron simsii HOM05D003866 ORTHO05D004508 2.4e-125 452.2 230 100.0
RhsimUnG0168700 Rhododendron simsii HOM05D003866 ORTHO05D004508 6.0e-121 437.6 230 96.1
vmacro02471 Vaccinium macrocarpon HOM05D003866 ORTHO05D004508 1.4e-117 426.4 230 93.0
CSS0038127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 3.4e-108 395.2 230 87.4
Actinidia24328 Actinidia chinensis HOM05D003866 ORTHO05D004508 2.9e-107 392.1 230 87.8
Dinv33030 Davidia involucrata HOM05D003866 ORTHO05D004508 1.4e-106 389.8 229 85.2
Dinv19723 Davidia involucrata HOM05D003866 ORTHO05D004508 3.2e-106 388.7 230 85.2
CSS0036127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 2.1e-105 386.0 230 85.7
GSVIVG01027965001 Vitis vinifera HOM05D003866 ORTHO05D004508 9.7e-103 377.1 227 81.9
CiPaw.08G097800 Carya illinoinensis HOM05D003866 ORTHO05D004508 3.7e-102 375.2 227 81.9
Lj2A1190T61 Lonicera japonica HOM05D003866 ORTHO05D004508 5.9e-100 367.9 227 80.2
Atru.chr5.1203 Acer truncatum HOM05D003866 ORTHO05D004508 7.7e-100 367.5 230 80.4
Haze_04883 Corylus avellana HOM05D003866 ORTHO05D004508 1.0e-99 367.1 227 80.2
Eucgr.K03458 Eucalyptus grandis HOM05D003866 ORTHO05D004508 2.2e-99 365.9 227 80.2
Cc01_g20600 Coffea canephora HOM05D003866 ORTHO05D004508 3.8e-99 365.2 230 78.3
DCAR_024209 Daucus carota HOM05D003866 ORTHO05D004508 1.4e-98 363.2 230 80.0
Prupe.8G257100 Prunus persica HOM05D003866 ORTHO05D004508 1.4e-98 363.2 227 79.7
MSTRG.18171 Avicennia marina HOM05D003866 ORTHO05D004508 1.9e-98 362.8 230 79.1
Cc01_g06400 Coffea canephora HOM05D003866 ORTHO05D004508 1.9e-98 362.8 230 77.8
Nitab4.5_0000051g0210 Nicotiana tabacum HOM05D003866 ORTHO05D004508 3.2e-98 362.1 228 78.1
ECA236G1731 Erigeron canadensis HOM05D003866 ORTHO05D004508 9.4e-98 360.5 229 74.2
Nitab4.5_0004737g0020 Nicotiana tabacum HOM05D003866 ORTHO05D004508 9.4e-98 360.5 228 77.6
MD03G1282400 Malus domestica HOM05D003866 ORTHO05D004508 1.2e-97 360.1 230 78.7
Lalb_Chr04g0259781 Lupinus albus HOM05D003866 ORTHO05D004508 1.6e-97 359.8 227 77.5
CANSAT25G0267 Cannabis sativa HOM05D003866 ORTHO05D004508 2.7e-97 359.0 229 78.6
Cfa005958 Carpinus fangiana HOM05D003866 ORTHO05D004508 2.7e-97 359.0 227 78.9
RcHm_v2.0_Chr6g0293371 Rosa chinensis HOM05D003866 ORTHO05D004508 3.6e-97 358.6 227 78.0
HanXRQChr04g0118161 Helianthus annuus HOM05D003866 ORTHO05D004508 6.1e-97 357.8 229 75.1
RcHm_v2.0_Chr5g0006471 Rosa chinensis HOM05D003866 ORTHO05D004508 6.1e-97 357.8 227 77.5
Lj1A33G82 Lonicera japonica HOM05D003866 ORTHO05D004508 1.0e-96 357.1 227 78.4
arahy.Tifrunner.gnm1.ann1.44W6WI Arachis hypogaea HOM05D003866 ORTHO05D004508 1.4e-96 356.7 229 76.0
Sopen11g008460 Solanum pennellii HOM05D003866 ORTHO05D004508 3.0e-96 355.5 228 75.4
CANSAT25G2840 Cannabis sativa HOM05D003866 ORTHO05D004508 3.9e-96 355.1 229 78.2
Ca_09142_v3 Cicer arietinum L. HOM05D003866 ORTHO05D004508 3.9e-96 355.1 228 75.4
Oeu024509.1 Olea europaea HOM05D003866 ORTHO05D004508 3.9e-96 355.1 230 76.5
HanXRQChr06g0163901 Helianthus annuus HOM05D003866 ORTHO05D004508 5.1e-96 354.8 229 73.4
Lsat_1_v5_gn_8_54720 Lactuca sativa HOM05D003866 ORTHO05D004508 5.1e-96 354.8 227 74.9
PGSC0003DMG400027789 Solanum tuberosum HOM05D003866 ORTHO05D004508 6.7e-96 354.4 228 75.4
MD11G1303900 Malus domestica HOM05D003866 ORTHO05D004508 8.8e-96 354.0 229 77.7
TWI14G1088 Tripterygium wilfordii HOM05D003866 ORTHO05D004508 1.1e-95 353.6 220 80.0
Solyc11g013460.2 Solanum lycopersicum HOM05D003866 ORTHO05D004508 2.0e-95 352.8 228 75.9
TAR636G2430 Trochodendron aralioides HOM05D003866 ORTHO05D004508 2.6e-95 352.4 226 79.2
FvH4_3g05411 Fragaria vesca HOM05D003866 ORTHO05D004508 3.3e-95 352.1 227 77.5
CAN.G337.118 Capsicum annuum HOM05D003866 ORTHO05D004508 7.4e-95 350.9 228 76.3
FAN15G0670 Fragaria x ananassa HOM05D003866 ORTHO05D004508 7.4e-95 350.9 227 77.5
Lj1g0017340 Lotus japonicus HOM05D003866 ORTHO05D004508 1.3e-94 350.1 227 74.9
Migut.I00105 Erythranthe guttata HOM05D003866 ORTHO05D004508 2.2e-94 349.4 230 74.8
Potri.010G206900 Populus trichocarpa HOM05D003866 ORTHO05D004508 2.2e-94 349.4 227 77.1
TAR365G0487 Trochodendron aralioides HOM05D003866 ORTHO05D004508 3.7e-94 348.6 226 79.2
Ciclev10022066m.g Citrus clementina HOM05D003866 ORTHO05D004508 4.8e-94 348.2 227 75.8
FvH4_7g06070 Fragaria vesca HOM05D003866 ORTHO05D004508 4.8e-94 348.2 227 75.8
CsaV3_4G000530 Cucumis sativus L. HOM05D003866 ORTHO05D004508 6.3e-94 347.8 227 74.0
FvH4_2g25231 Fragaria vesca HOM05D003866 ORTHO05D004508 6.3e-94 347.8 227 76.2
Nn4g25882 Nelumbo nucifera HOM05D003866 ORTHO05D004508 6.3e-94 347.8 229 75.1
SGA_v2.0_scaffold1G00383 Striga asiatica HOM05D003866 ORTHO05D004508 6.3e-94 347.8 230 74.8
Peaxi162Scf00140g01011 Petunia axillaris HOM05D003866 ORTHO05D004508 1.1e-93 347.1 227 74.9
FAN11G1587 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.4e-93 346.7 227 77.1
Lj1C0G2 Lonicera japonica HOM05D003866 ORTHO05D004508 3.1e-93 345.5 219 79.5
RcHm_v2.0_Chr7g0221651 Rosa chinensis HOM05D003866 ORTHO05D004508 5.3e-93 344.7 227 74.0
TPR.G9596 Trifolium pratense HOM05D003866 ORTHO05D004508 5.3e-93 344.7 227 73.6
Glyma.19G209400 Glycine max HOM05D003866 ORTHO05D004508 7.0e-93 344.4 228 73.2
SalBow2G1869 Salvia bowleyana HOM05D003866 ORTHO05D004508 7.0e-93 344.4 230 74.8
Aqoxy5G00709 Aquilegia oxysepala HOM05D003866 ORTHO05D004508 1.2e-92 343.6 226 75.7
MBI19_g41921_MAGBIO Magnolia biondii HOM05D003866 ORTHO05D004508 2.6e-92 342.4 226 73.5
Medtr2g014120 Medicago truncatula HOM05D003866 ORTHO05D004508 2.6e-92 342.4 227 73.6
Medtr7g108540 Medicago truncatula HOM05D003866 ORTHO05D004508 2.6e-92 342.4 227 73.6
PGSC0003DMG400027790 Solanum tuberosum HOM05D003866 ORTHO05D004508 2.6e-92 342.4 228 74.6
FAN27G2002 Fragaria x ananassa HOM05D003866 ORTHO05D004508 4.5e-92 341.7 227 75.8
Psat3g022720 Pisum sativum HOM05D003866 ORTHO05D004508 4.5e-92 341.7 227 74.0
Glyma.03G212300 Glycine max HOM05D003866 ORTHO05D004508 5.9e-92 341.3 224 73.2
VMungo1383G2803 Vigna mungo HOM05D003866 ORTHO05D004508 1.0e-91 340.5 225 74.2
TAR365G0990 Trochodendron aralioides HOM05D003866 ORTHO05D004508 1.7e-91 339.7 219 79.5
EL10Ac4g07959 Beta vulgaris HOM05D003866 ORTHO05D004508 2.2e-91 339.3 227 74.9
Phvul.001G205200 Phaseolus vulgaris HOM05D003866 ORTHO05D004508 2.2e-91 339.3 224 73.2
arahy.Tifrunner.gnm1.ann1.AT77GA Arachis hypogaea HOM05D003866 ORTHO05D004508 2.9e-91 339.0 229 72.9
Sed0016300 Sechium edule HOM05D003866 ORTHO05D004508 2.9e-91 339.0 227 72.7
Manes.12G006300 Manihot esculenta HOM05D003866 ORTHO05D004508 5.0e-91 338.2 224 77.7
Gohir.A12G010200 Gossypium hirsutum HOM05D003866 ORTHO05D004508 6.5e-91 337.8 227 73.6
Sabra08G0038800 Salix brachista HOM05D003866 ORTHO05D004508 6.5e-91 337.8 229 74.7
Cpa.g.sc11.50 Carica papaya HOM05D003866 ORTHO05D004508 8.5e-91 337.4 227 74.4
Manes.13G006100 Manihot esculenta HOM05D003866 ORTHO05D004508 1.9e-90 336.3 226 75.2
Gorai.008G010300 Gossypium raimondii HOM05D003866 ORTHO05D004508 4.2e-90 335.1 227 74.0
Gohir.D12G010300 Gossypium hirsutum HOM05D003866 ORTHO05D004508 7.2e-90 334.3 223 74.9
unitig_8.g3710 Utricularia gibba HOM05D003866 ORTHO05D004508 7.2e-90 334.3 230 70.9
COL.COLO4_23391 Corchorus olitorius HOM05D003866 ORTHO05D004508 2.7e-89 332.4 227 74.0
Gohir.D04G003400 Gossypium hirsutum HOM05D003866 ORTHO05D004508 2.7e-89 332.4 227 73.6
Gorai.012G004500 Gossypium raimondii HOM05D003866 ORTHO05D004508 6.1e-89 331.3 227 73.1
PGR031G3621 Punica granatum HOM05D003866 ORTHO05D004508 8.0e-89 330.9 263 66.2
AUR62022186 Chenopodium quinoa HOM05D003866 ORTHO05D004508 1.0e-88 330.5 226 74.3
PSO832G2724 Papaver somniferum HOM05D003866 ORTHO05D004508 1.0e-88 330.5 227 74.0
Hund18125 Selenicereus undatus HOM05D003866 ORTHO05D004508 1.8e-88 329.7 227 73.6
AT2G27490 Arabidopsis thaliana HOM05D003866 ORTHO05D004508 3.0e-88 328.9 227 71.4
AUR62031891 Chenopodium quinoa HOM05D003866 ORTHO05D004508 3.0e-88 328.9 226 73.9
AL4G21480 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 6.7e-88 327.8 227 71.4
FAN24G3471 Fragaria x ananassa HOM05D003866 ORTHO05D004508 6.7e-88 327.8 202 80.2
PSO210G0692 Papaver somniferum HOM05D003866 ORTHO05D004508 1.1e-87 327.0 227 74.0
A03p26580 Brassica napus HOM05D003866 ORTHO05D004508 2.0e-87 326.2 227 71.4
BolC3t15527H Brassica oleracea HOM05D003866 ORTHO05D004508 2.0e-87 326.2 227 71.4
Aa31LG5G8830 Aethionema arabicum HOM05D003866 ORTHO05D004508 2.6e-87 325.9 229 70.7
Prupe.6G179600 Prunus persica HOM05D003866 ORTHO05D004508 2.6e-87 325.9 224 70.1
BcaB01g03075 Brassica carinata HOM05D003866 ORTHO05D004508 3.3e-87 325.5 226 71.2
BcaC01g04944 Brassica carinata HOM05D003866 ORTHO05D004508 4.4e-87 325.1 227 71.4
Duzib133G0502 Durio zibethinus HOM05D003866 ORTHO05D004508 4.4e-87 325.1 223 72.2
C03p31840 Brassica napus HOM05D003866 ORTHO05D004508 5.7e-87 324.7 227 70.9
Thhalv10017203m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 9.7e-87 323.9 227 70.9
BraA03t11870Z Brassica rapa HOM05D003866 ORTHO05D004508 1.7e-86 323.2 227 70.9
Os01g0360600 Oryza sativa ssp. japonica HOM05D003866 ORTHO05D004508 1.7e-86 323.2 229 68.1
A07p18280 Brassica napus HOM05D003866 ORTHO05D004508 3.7e-86 322.0 226 70.8
Sp4g10360 Schrenkiella parvula HOM05D003866 ORTHO05D004508 6.3e-86 321.2 227 70.0
CARHR120140 Cardamine hirsuta HOM05D003866 ORTHO05D004508 9.1e-85 317.4 227 70.0
Thhalv10017190m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 4.5e-84 315.1 227 68.7
ATR0706G042 Amborella trichopoda HOM05D003866 ORTHO05D004508 1.0e-83 313.9 226 69.5
ClCG10G010790 Citrullus lanatus HOM05D003866 ORTHO05D004508 1.0e-83 313.9 309 54.7
FAN10G2101 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.3e-83 313.5 227 70.5
CDE09G0414 Ceratophyllum demersum HOM05D003866 ORTHO05D004508 1.9e-82 309.7 229 69.0
Actinidia32233 Actinidia chinensis HOM05D003866 ORTHO05D004508 2.5e-82 309.3 180 87.8
Sp4g10280 Schrenkiella parvula HOM05D003866 ORTHO05D004508 2.1e-81 306.2 226 67.3
Carub.0004s0812 Capsella rubella HOM05D003866 ORTHO05D004508 2.7e-81 305.8 204 74.5
arahy.Tifrunner.gnm1.ann1.9DBC1D Arachis hypogaea HOM05D003866 ORTHO05D004508 2.3e-80 302.8 232 66.8
Sc03g0003200 Simmondsia chinensis HOM05D006805 ORTHO05D004508 6.7e-80 301.2 195 77.9
Zm00001eb041190 Zea mays HOM05D003866 ORTHO05D004508 6.7e-80 301.2 229 64.2
Thecc.01G295900 Theobroma cacao HOM05D003866 ORTHO05D004508 9.7e-79 297.4 210 69.5
RcHm_v2.0_Chr1g0333581 Rosa chinensis HOM05D003866 ORTHO05D004508 4.8e-78 295.0 230 67.0
BcaB02g10095 Brassica carinata HOM05D003866 ORTHO05D004508 7.0e-77 291.2 229 65.1
Gohir.A05G412600 Gossypium hirsutum HOM05D003866 ORTHO05D004508 7.0e-77 291.2 219 67.6
SEGI_05441 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 2.1e-73 279.6 229 62.0
Sabra10G0159700 Salix brachista HOM05D003866 ORTHO05D002218 8.0e-73 277.7 188 73.4
Hund18126 Selenicereus undatus HOM05D003866 ORTHO05D004508 4.8e-70 268.5 197 68.5
RcHm_v2.0_Chr1g0334201 Rosa chinensis HOM05D003866 ORTHO05D004508 7.2e-66 254.6 152 81.6
AL8G17300 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 6.8e-64 248.1 237 57.8
SGA_v2.0_scaffold25G10945 Striga asiatica HOM05D003866 ORTHO05D004508 1.2e-63 247.3 182 68.7
Mapoly0028s0053 Marchantia polymorpha HOM05D003866 ORTHO05D004508 1.3e-62 243.8 210 57.1
Nn4g25856 Nelumbo nucifera HOM05D003866 ORTHO05D004508 1.4e-61 240.4 154 78.6
Potri.008G053601 Populus trichocarpa HOM05D003866 ORTHO05D004508 2.4e-61 239.6 133 88.7
Pp3c2_13260 Physcomitrium patens HOM05D003866 ORTHO05D004508 1.2e-60 237.3 222 54.1
FAN25G0878 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.7e-59 233.4 144 79.2
AagrBONN_evm.TU.Sc2ySwM_228.2237 Anthoceros agrestis HOM05D003866 ORTHO05D004508 4.7e-57 225.3 236 50.0
FAN20G0831 Fragaria x ananassa HOM05D003866 ORTHO05D004508 3.4e-55 219.2 124 86.3
SMO144G0118 Selaginella moellendorffii HOM05D003866 ORTHO05D004508 3.7e-54 215.7 219 50.7
EL10Ac1g00209 Beta vulgaris HOM05D003866 ORTHO05D004508 6.6e-51 204.9 172 64.0
MD12G1063200 Malus domestica HOM05D003866 ORTHO05D004508 2.1e-49 199.9 144 71.5
Sc03g0003210 Simmondsia chinensis HOM05D003866 ORTHO05D004508 4.9e-46 188.7 142 68.3
Carub.0001s3498 Capsella rubella HOM05D003866 ORTHO05D004508 1.1e-45 187.6 134 69.4
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 4.1e-45 185.7 119 73.9
arahy.Tifrunner.gnm1.ann1.ZE4P1V Arachis hypogaea HOM05D003866 ORTHO05D004508 1.2e-44 184.1 147 63.9
BcaC02g10889 Brassica carinata HOM05D003866 ORTHO05D004508 1.2e-44 184.1 140 62.9
Zm00001eb341290 Zea mays HOM05D003866 ORTHO05D004508 2.5e-42 176.4 144 59.7
Cre10.g436150 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 1.2e-41 174.1 191 49.2
SHI02446 Sapria himalayana HOM05D003866 ORTHO05D004508 1.8e-40 170.2 146 62.3
RcHm_v2.0_Chr4g0419041 Rosa chinensis HOM05D003866 ORTHO05D004508 3.7e-38 162.5 126 67.5
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 1.2e-36 157.5 185 45.9
HPP92_010697 Vanilla planifolia HOM05D001483 ORTHO05D001463 1.3e-35 154.1 191 48.2
BolC4t23901H Brassica oleracea HOM05D003866 ORTHO05D004508 1.5e-34 150.6 109 71.6
Oeu047454.1 Olea europaea HOM05D003866 ORTHO05D004508 1.9e-34 150.2 97 76.3
QL12p026964 Quercus lobata HOM05D003866 ORTHO05D004508 2.5e-34 149.8 85 84.7
GSVIVG01010954001 Vitis vinifera HOM05D003866 ORTHO05D004508 9.5e-34 147.9 88 80.7
arahy.Tifrunner.gnm1.ann1.86SF76 Arachis hypogaea HOM05D003866 ORTHO05D004508 8.1e-33 144.8 135 55.6
BraA07t29544Z Brassica rapa HOM05D003866 ORTHO05D004508 2.6e-31 139.8 102 71.6
CAN.G174.11 Capsicum annuum HOM05D003866 ORTHO05D004508 9.9e-31 137.9 85 81.2
MSTRG.21619 Avicennia marina HOM05D003866 ORTHO05D004508 2.1e-28 130.2 91 73.6
ClCG10G010800 Citrullus lanatus HOM05D003866 ORTHO05D004508 2.1e-28 130.2 85 72.9
BcaC02g10888 Brassica carinata HOM05D003866 ORTHO05D004508 3.5e-28 129.4 82 80.5
Psat5g098240 Pisum sativum HOM05D001063 ORTHO05D000986 3.5e-28 129.4 119 55.5
C04p24060 Brassica napus HOM05D003866 ORTHO05D004508 4.6e-28 129.0 95 71.6
CAN.G255.6 Capsicum annuum HOM05D003866 ORTHO05D004508 7.8e-28 128.3 77 83.1
arahy.Tifrunner.gnm1.ann1.VNWS1A Arachis hypogaea HOM05D003866 ORTHO05D004508 3.0e-27 126.3 108 59.3
FvH4_3g05410 Fragaria vesca HOM05D003866 ORTHO05D004508 6.2e-25 118.6 78 75.6
FAN06G0461 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.4e-24 117.5 85 69.4
SEGI_13628 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 3.1e-24 116.3 85 68.2
CAN.G255.7 Capsicum annuum HOM05D003866 ORTHO05D004508 4.0e-24 115.9 99 62.6
RcHm_v2.0_Chr6g0258301 Rosa chinensis HOM05D003866 ORTHO05D004508 2.6e-23 113.2 146 47.3
QL12p026975 Quercus lobata HOM05D003866 ORTHO05D004508 5.8e-23 112.1 74 74.3
DCAR_024210 Daucus carota HOM05D003866 ORTHO05D004508 1.3e-19 100.9 59 83.1
MD14G1128400 Malus domestica HOM05D003866 ORTHO05D004508 1.4e-16 90.9 51 88.2
arahy.Tifrunner.gnm1.ann1.TVUZ4W Arachis hypogaea HOM05D003866 ORTHO05D004508 2.4e-16 90.1 105 52.4
RcHm_v2.0_Chr4g0419031 Rosa chinensis HOM05D003866 ORTHO05D004508 7.6e-15 85.1 84 56.0
PRCOL_00003268 Prasinoderma coloniale HOM05D003001 ORTHO05D003494 2.2e-14 83.6 182 29.1
ClCG10G010610 Citrullus lanatus HOM05D003866 ORTHO05D004508 2.7e-12 76.6 57 63.2
MCO11G607 Micromonas commoda HOM05D003866 ORTHO05D004508 3.5e-12 76.3 221 28.5
SHI02445 Sapria himalayana HOM05D003866 ORTHO05D004508 7.9e-12 75.1 49 73.5
HanXRQChr04g0118191 Helianthus annuus HOM05D003866 ORTHO05D004508 3.9e-11 72.8 67 55.2
RcHm_v2.0_Chr1g0333451 Rosa chinensis HOM05D003866 ORTHO05D004508 3.3e-10 69.7 60 56.7
Cre13.g586250 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 1.1e-08 64.7 166 30.1


User provided reference genes

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