Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0005700 Rhododendron simsii HOM05D004181 ORTHO05D005610 3.2e-281 971.1 480 100.0
CSS0009092 Camellia sinensis var. sinensis HOM05D004181 ORTHO05D005610 7.7e-110 401.7 705 41.7
Rhsim04G0215600 Rhododendron simsii HOM05D004181 ORTHO05D005610 1.9e-108 397.1 680 43.7
CSS0036329 Camellia sinensis var. sinensis HOM05D004181 ORTHO05D005610 1.8e-106 390.6 677 41.4
Ca_00581_v3 Cicer arietinum L. HOM05D004181 ORTHO05D005610 2.0e-105 387.1 544 46.3
Dinv44435 Davidia involucrata HOM05D004181 ORTHO05D005610 3.7e-104 382.9 703 40.1
Cfa015503 Carpinus fangiana HOM05D004181 ORTHO05D005610 1.5e-102 377.5 546 46.7
TAR633G0339 Trochodendron aralioides HOM05D004181 ORTHO05D005610 8.5e-101 371.7 706 39.5
Manes.15G017750 Manihot esculenta HOM05D004181 ORTHO05D005610 9.4e-100 368.2 703 38.4
Ciclev10004155m.g Citrus clementina HOM05D004181 ORTHO05D005610 1.6e-99 367.5 703 39.1
QL06p007241 Quercus lobata HOM05D004181 ORTHO05D005610 2.7e-99 366.7 681 39.5
Potri.008G195800 Populus trichocarpa HOM05D004181 ORTHO05D005610 1.0e-98 364.8 703 38.0
Duzib151G0672 Durio zibethinus HOM05D004181 ORTHO05D005610 2.3e-98 363.6 703 39.4
Thecc.04G276100 Theobroma cacao HOM05D004181 ORTHO05D005610 2.3e-98 363.6 709 37.9
Gorai.011G185300 Gossypium raimondii HOM05D004181 ORTHO05D005610 3.0e-98 363.2 702 39.3
COL.COLO4_13939 Corchorus olitorius HOM05D004181 ORTHO05D005610 5.1e-98 362.5 709 39.5
Sabra08G0148900 Salix brachista HOM05D004181 ORTHO05D005610 6.7e-98 362.1 676 39.9
Manes.03G190400 Manihot esculenta HOM05D004181 ORTHO05D005610 2.0e-97 360.5 703 38.1
Prupe.1G143100 Prunus persica HOM05D004181 ORTHO05D005610 3.3e-97 359.8 700 38.6
Gohir.D10G165800 Gossypium hirsutum HOM05D004181 ORTHO05D005610 5.7e-97 359.0 686 38.6
Psat1g186920 Pisum sativum HOM05D004181 ORTHO05D005610 5.7e-97 359.0 698 37.7
Gohir.A10G101825 Gossypium hirsutum HOM05D004181 ORTHO05D005610 1.3e-96 357.8 702 39.5
TWI09G1497 Tripterygium wilfordii HOM05D004181 ORTHO05D005610 3.7e-96 356.3 676 39.2
Aqoxy5G00623 Aquilegia oxysepala HOM05D004181 ORTHO05D005610 1.8e-95 354.0 678 38.5
Glyma.13G214400 Glycine max HOM05D004181 ORTHO05D005610 1.8e-95 354.0 704 38.2
Potri.010G031800 Populus trichocarpa HOM05D004181 ORTHO05D005610 1.8e-95 354.0 702 37.7
Lalb_Chr18g0055771 Lupinus albus HOM05D004181 ORTHO05D005610 2.4e-95 353.6 707 38.5
MD13G1174600 Malus domestica HOM05D004181 ORTHO05D005610 4.1e-95 352.8 667 38.4
Cpa.g.sc16.105 Carica papaya HOM05D004181 ORTHO05D005610 5.3e-95 352.4 702 37.9
QL12p038326 Quercus lobata HOM05D004181 ORTHO05D005610 5.3e-95 352.4 703 38.3
TWI73G0666 Tripterygium wilfordii HOM05D004181 ORTHO05D005610 1.6e-94 350.9 676 38.8
CiPaw.01G154000 Carya illinoinensis HOM05D004181 ORTHO05D005610 2.0e-94 350.5 705 37.9
Glyma.15G098800 Glycine max HOM05D004181 ORTHO05D005610 2.0e-94 350.5 677 39.0
FAN12G4244 Fragaria x ananassa HOM05D004181 ORTHO05D005610 2.9e-93 346.7 704 37.8
FvH4_4g17050 Fragaria vesca HOM05D004181 ORTHO05D005610 3.8e-93 346.3 704 37.8
LjContig00389g0007799 Lotus japonicus HOM05D004181 ORTHO05D005610 3.8e-93 346.3 676 38.3
RcHm_v2.0_Chr4g0420851 Rosa chinensis HOM05D004181 ORTHO05D005610 5.0e-93 345.9 704 36.9
Cc03_g12380 Coffea canephora HOM05D004181 ORTHO05D005610 8.5e-93 345.1 709 37.4
MSTRG.21818 Avicennia marina HOM05D004181 ORTHO05D005610 1.1e-92 344.7 699 37.3
Nn3g21283 Nelumbo nucifera HOM05D004181 ORTHO05D005610 1.1e-92 344.7 673 38.3
Medtr2g020380 Medicago truncatula HOM05D004181 ORTHO05D005610 1.5e-92 344.4 677 37.2
FAN07G0512 Fragaria x ananassa HOM05D004181 ORTHO05D005610 1.9e-92 344.0 705 37.4
FAN12G1830 Fragaria x ananassa HOM05D004181 ORTHO05D005610 1.9e-92 344.0 704 37.6
MD16G1176300 Malus domestica HOM05D004181 ORTHO05D005610 1.9e-92 344.0 701 36.7
Phvul.006G160500 Phaseolus vulgaris HOM05D004181 ORTHO05D005610 1.9e-92 344.0 675 38.5
FAN17G2769 Fragaria x ananassa HOM05D004181 ORTHO05D005610 2.5e-92 343.6 704 37.8
VMungo0540G0214 Vigna mungo HOM05D004181 ORTHO05D005610 7.2e-92 342.0 690 37.7
AL6G29980 Arabidopsis lyrata HOM05D004181 ORTHO05D005610 1.6e-91 340.9 709 36.5
Gorai.005G057000 Gossypium raimondii HOM05D004181 ORTHO05D005610 1.6e-91 340.9 702 37.0
Haze_01049 Corylus avellana HOM05D004181 ORTHO05D005610 2.7e-91 340.1 531 44.4
AT5G18700 Arabidopsis thaliana HOM05D004181 ORTHO05D005610 3.6e-91 339.7 709 36.8
TPR.G1487 Trifolium pratense HOM05D004181 ORTHO05D005610 8.0e-91 338.6 677 36.9
C03p10540 Brassica napus HOM05D004181 ORTHO05D005610 1.4e-90 337.8 708 36.7
BcaC04g18651 Brassica carinata HOM05D004181 ORTHO05D005610 2.3e-90 337.0 680 37.8
C09p57750 Brassica napus HOM05D004181 ORTHO05D005610 2.3e-90 337.0 680 37.8
Peaxi162Scf00058g01114 Petunia axillaris HOM05D004181 ORTHO05D005610 2.3e-90 337.0 704 35.8
A10p20860 Brassica napus HOM05D004181 ORTHO05D005610 3.0e-90 336.7 680 37.5
Carub.0006s1700 Capsella rubella HOM05D004181 ORTHO05D005610 3.0e-90 336.7 709 36.7
BolC9t58645H Brassica oleracea HOM05D004181 ORTHO05D005610 4.0e-90 336.3 680 37.8
BraA10t44151Z Brassica rapa HOM05D004181 ORTHO05D005610 4.0e-90 336.3 680 37.5
A03p09050 Brassica napus HOM05D004181 ORTHO05D005610 5.2e-90 335.9 708 36.6
Gohir.D02G051700 Gossypium hirsutum HOM05D004181 ORTHO05D005610 5.2e-90 335.9 703 37.1
Sp6g25640 Schrenkiella parvula HOM05D004181 ORTHO05D005610 8.8e-90 335.1 680 37.9
Solyc08g013940.3 Solanum lycopersicum HOM05D004181 ORTHO05D005610 1.1e-89 334.7 701 37.7
CARHR194300 Cardamine hirsuta HOM05D004181 ORTHO05D005610 1.5e-89 334.3 681 37.6
Thhalv10012450m.g Eutrema salsugineum HOM05D004181 ORTHO05D005610 1.5e-89 334.3 680 37.1
arahy.Tifrunner.gnm1.ann1.6ZP27B Arachis hypogaea HOM05D004181 ORTHO05D005610 3.3e-89 333.2 561 40.3
BolC3t13535H Brassica oleracea HOM05D004181 ORTHO05D005610 4.4e-89 332.8 708 36.4
Sopen08g004800 Solanum pennellii HOM05D004181 ORTHO05D005610 5.7e-89 332.4 701 36.5
BraA03t10229Z Brassica rapa HOM05D004181 ORTHO05D005610 9.7e-89 331.6 708 36.3
Migut.N00126 Erythranthe guttata HOM05D004181 ORTHO05D005610 1.7e-88 330.9 701 36.5
CsaV3_3G014080 Cucumis sativus L. HOM05D004181 ORTHO05D005610 2.8e-88 330.1 701 37.8
AUR62040726 Chenopodium quinoa HOM05D004181 ORTHO05D005610 6.3e-88 328.9 673 36.7
CAN.G2005.1 Capsicum annuum HOM05D004181 ORTHO05D005610 1.1e-87 328.2 701 36.2
ClCG05G005760 Citrullus lanatus HOM05D004181 ORTHO05D005610 4.1e-87 326.2 556 40.8
AUR62040385 Chenopodium quinoa HOM05D004181 ORTHO05D005610 1.2e-86 324.7 699 35.9
Aa31LG11G10920 Aethionema arabicum HOM05D004181 ORTHO05D005610 2.7e-86 323.6 673 37.3
EL10Ac3g06539 Beta vulgaris HOM05D004181 ORTHO05D005610 7.7e-86 322.0 672 37.1
Sed0020769 Sechium edule HOM05D004181 ORTHO05D005610 2.9e-85 320.1 675 37.9
Hund20614 Selenicereus undatus HOM05D004181 ORTHO05D005610 8.5e-85 318.5 673 37.0
BcaB08g36651 Brassica carinata HOM05D004181 ORTHO05D005610 3.2e-84 316.6 534 40.3
ATR0706G144 Amborella trichopoda HOM05D004181 ORTHO05D005610 5.5e-84 315.8 652 36.3
Sed0026329 Sechium edule HOM05D004181 ORTHO05D005610 1.6e-83 314.3 557 40.8
vmacro08213 Vaccinium macrocarpon HOM05D004181 ORTHO05D005610 2.7e-83 313.5 515 45.0
CANSAT78G2156 Cannabis sativa HOM05D004181 ORTHO05D005610 4.7e-83 312.8 556 42.1
Eucgr.H03714 Eucalyptus grandis HOM05D004181 ORTHO05D005610 8.8e-82 308.5 560 41.1
Peaxi162Scf00075g01553 Petunia axillaris HOM05D004181 ORTHO05D005610 1.7e-80 304.3 534 40.8
Sc13g0003670 Simmondsia chinensis HOM05D004181 ORTHO05D005610 5.9e-78 295.8 261 62.5
PSO170G6249 Papaver somniferum HOM05D004181 ORTHO05D005610 1.0e-77 295.0 701 34.7
MELO3C006602.2 Cucumis melo HOM05D004181 ORTHO05D005610 1.3e-77 294.7 701 35.9
SHI00295 Sapria himalayana HOM05D004181 ORTHO05D005610 5.0e-77 292.7 740 32.8
Gohir.A02G045700 Gossypium hirsutum HOM05D004181 ORTHO05D005610 1.1e-76 291.6 262 61.1
SalBow5G5345 Salvia bowleyana HOM05D004181 ORTHO05D005610 1.6e-75 287.7 385 47.3
ECA233G4950 Erigeron canadensis HOM05D004181 ORTHO05D005610 6.1e-75 285.8 254 61.0
SalBow5G0241 Salvia bowleyana HOM05D004181 ORTHO05D005610 6.1e-75 285.8 385 47.0
GSVIVG01017819001 Vitis vinifera HOM05D004181 ORTHO05D005610 1.5e-73 281.2 618 37.1
Lsat_1_v5_gn_6_15980 Lactuca sativa HOM05D004181 ORTHO05D005610 2.0e-73 280.8 254 59.1
SGA_v2.0_scaffold89G27558 Striga asiatica HOM05D004181 ORTHO05D005610 2.6e-73 280.4 385 46.5
Zm00001eb127880 Zea mays HOM05D004181 ORTHO05D005610 2.8e-72 276.9 706 31.9
Zm00001eb333450 Zea mays HOM05D004181 ORTHO05D005610 2.4e-71 273.9 705 31.2
Os01g0259400 Oryza sativa ssp. japonica HOM05D004181 ORTHO05D005610 4.1e-71 273.1 705 31.8
HanXRQChr13g0414551 Helianthus annuus HOM05D004181 ORTHO05D005610 1.3e-69 268.1 254 57.9
CiPaw.02G087200 Carya illinoinensis HOM05D004181 ORTHO05D005610 2.9e-69 266.9 553 37.1
Lj6C668T4 Lonicera japonica HOM05D004181 ORTHO05D005610 3.8e-69 266.5 325 49.2
SEGI_19119 Sequoiadendron giganteum HOM05D004181 ORTHO05D005610 2.8e-67 260.4 561 34.6
HPP92_025279 Vanilla planifolia HOM05D004181 ORTHO05D005610 1.6e-62 244.6 566 33.4
DCAR_024617 Daucus carota HOM05D004181 ORTHO05D005610 7.8e-62 242.3 322 47.2
CDE12G0304 Ceratophyllum demersum HOM05D004181 ORTHO05D005610 6.2e-59 232.6 494 37.4
Lalb_Chr15g0087091 Lupinus albus HOM05D004181 ORTHO05D005610 2.3e-58 230.7 195 62.1
Nitab4.5_0003641g0020 Nicotiana tabacum HOM05D004181 ORTHO05D005610 7.5e-57 225.7 433 39.5
AagrBONN_evm.TU.Sc2ySwM_117.2942 Anthoceros agrestis HOM05D004181 ORTHO05D005610 1.3e-56 224.9 242 47.9
Nitab4.5_0000242g0080 Nicotiana tabacum HOM05D004181 ORTHO05D005610 2.9e-56 223.8 428 39.7
Mapoly0072s0051 Marchantia polymorpha HOM05D004181 ORTHO05D005610 1.0e-53 215.3 243 48.6
Pp3c14_3850 Physcomitrium patens HOM05D004181 ORTHO05D005610 2.3e-53 214.2 244 46.3
SMO144G0053 Selaginella moellendorffii HOM05D004181 ORTHO05D005610 2.2e-48 197.6 243 44.9
Pp3c2_16690 Physcomitrium patens HOM05D004181 ORTHO05D005610 4.9e-48 196.4 307 37.5
arahy.Tifrunner.gnm1.ann1.7XC003 Arachis hypogaea HOM05D000722 ORTHO05D005610 1.8e-34 151.4 143 53.8
CBR_g38144 Chara braunii HOM05D004181 ORTHO05D005610 5.2e-34 149.8 255 34.9
MCO07G673 Micromonas commoda HOM05D004181 ORTHO05D005610 2.1e-30 137.9 261 35.2
Cre14.g612000 Chlamydomonas reinhardtii HOM05D004181 ORTHO05D005610 1.2e-25 122.1 264 29.9
SGA_v2.0_scaffold299G47726 Striga asiatica HOM05D004181 ORTHO05D005610 3.4e-25 120.6 267 38.2
PGSC0003DMG400016756 Solanum tuberosum HOM05D004181 ORTHO05D005610 9.9e-25 119.0 149 48.3
Lalb_Chr15g0087081 Lupinus albus HOM05D004181 ORTHO05D005610 8.4e-24 115.9 222 40.5
THA.LOC104820110 Tarenaya hassleriana HOM05D004181 ORTHO05D005610 2.4e-23 114.4 89 64.0
FAN22G0275 Fragaria x ananassa HOM05D004181 ORTHO05D005610 3.2e-23 114.0 253 36.4
Gohir.A02G045701 Gossypium hirsutum HOM05D004181 ORTHO05D005610 1.6e-22 111.7 249 37.3
PGR004G0905 Punica granatum HOM05D004181 ORTHO05D005610 3.9e-21 107.1 86 64.0
Sc13g0003660 Simmondsia chinensis HOM05D004181 ORTHO05D005610 9.9e-17 92.4 224 37.9
PRCOL_00001584 Prasinoderma coloniale HOM05D004181 ORTHO05D005610 8.4e-16 89.4 286 25.5
arahy.Tifrunner.gnm1.ann1.Z8UJG3 Arachis hypogaea HOM05D004181 ORTHO05D005610 3.2e-15 87.4 64 65.6
Solyc05g023630.1 Solanum lycopersicum HOM05D004181 ORTHO05D005610 2.3e-13 81.3 74 56.8
AT1G33940 Arabidopsis thaliana HOM05D004181 ORTHO05D005610 1.5e-12 78.6 120 41.7
Solyc05g021200.1 Solanum lycopersicum HOM05D004181 ORTHO05D005610 4.9e-08 63.5 61 50.8
BcaC05g24879 Brassica carinata HOM05D004181 ORTHO05D039090 2.1e-06 58.2 44 65.9
Atru.chr4.2742 Acer truncatum HOM05D004181 ORTHO05D005610 7.9e-06 56.2 35 65.7


User provided reference genes

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