Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0005300 Rhododendron simsii HOM05D001935 ORTHO05D010109 4.8e-103 377.9 193 100.0
Rhsim13G0005200 Rhododendron simsii HOM05D001935 ORTHO05D010109 5.3e-70 268.1 146 94.5
CSS0036092 Camellia sinensis var. sinensis HOM05D001935 ORTHO05D010109 1.4e-41 173.7 151 64.9
CSS0010042 Camellia sinensis var. sinensis HOM05D001935 ORTHO05D010109 9.1e-38 161.0 150 63.3
CSS0012652 Camellia sinensis var. sinensis HOM05D001935 ORTHO05D010109 9.1e-38 161.0 150 63.3
Actinidia21004 Actinidia chinensis HOM05D001136 ORTHO05D001144 8.6e-36 154.5 145 58.6
Dinv10085 Davidia involucrata HOM05D001935 ORTHO05D010109 1.4e-33 147.1 122 63.9
Hma1.2p1_0486F.1_g163095 Hydrangea macrophylla HOM05D001935 ORTHO05D010109 6.8e-33 144.8 150 56.0
Hma1.2p1_0486F.1_g163120 Hydrangea macrophylla HOM05D001935 ORTHO05D010109 6.8e-33 144.8 150 56.0
TAR633G2657 Trochodendron aralioides HOM05D001935 ORTHO05D010109 4.4e-32 142.1 143 51.0
Cpa.g.sc18.27 Carica papaya HOM05D001935 ORTHO05D010109 1.6e-29 133.7 148 45.9
Haze_05029 Corylus avellana HOM05D001935 ORTHO05D010109 5.9e-29 131.7 147 48.3
Dinv10084 Davidia involucrata HOM05D001935 ORTHO05D010109 5.9e-29 131.7 99 66.7
QL12p020164 Quercus lobata HOM05D001935 ORTHO05D010109 1.3e-28 130.6 142 48.6
TAR362G0690 Trochodendron aralioides HOM05D001136 ORTHO05D010109 1.7e-28 130.2 142 49.3
Cfa005813 Carpinus fangiana HOM05D001935 ORTHO05D010109 2.3e-28 129.8 148 48.0
Thecc.01G311900 Theobroma cacao HOM05D001935 ORTHO05D010109 1.9e-27 126.7 141 42.6
Duzib138G0891 Durio zibethinus HOM05D001935 ORTHO05D010109 4.7e-26 122.1 143 43.4
CiPaw.08G090700 Carya illinoinensis HOM05D001935 ORTHO05D010109 8.0e-26 121.3 144 47.9
COL.COLO4_23245 Corchorus olitorius HOM05D001935 ORTHO05D010109 8.0e-26 121.3 157 43.3
TWI36G1013 Tripterygium wilfordii HOM05D001935 ORTHO05D010109 8.0e-26 121.3 155 44.5
Potri.006G105500 Populus trichocarpa HOM05D001935 ORTHO05D010109 5.8e-24 115.2 162 43.8
Potri.006G105600 Populus trichocarpa HOM05D001935 ORTHO05D010109 5.8e-24 115.2 162 43.8
CiPaw.07G116400 Carya illinoinensis HOM05D001935 ORTHO05D010109 7.5e-24 114.8 152 44.1
Rhsim03G0153200 Rhododendron simsii HOM05D003369 ORTHO05D004089 4.9e-23 112.1 78 75.6
Sabra16G0129700 Salix brachista HOM05D001935 ORTHO05D010109 3.2e-22 109.4 156 44.2
Atru.chr5.1021 Acer truncatum HOM05D001935 ORTHO05D010109 4.1e-22 109.0 155 40.0
Oeu038015.2 Olea europaea HOM05D001935 ORTHO05D010109 4.1e-22 109.0 146 45.2
Potri.016G128800 Populus trichocarpa HOM05D001935 ORTHO05D010109 4.1e-22 109.0 154 42.2
Gohir.D12G129300 Gossypium hirsutum HOM05D001935 ORTHO05D010109 1.2e-21 107.5 145 38.6
SalBow3G1122 Salvia bowleyana HOM05D001935 ORTHO05D010109 2.0e-21 106.7 154 42.2
Gorai.008G140400 Gossypium raimondii HOM05D001935 ORTHO05D010109 4.6e-21 105.5 145 37.9
Gohir.A12G125800 Gossypium hirsutum HOM05D001935 ORTHO05D010109 6.0e-21 105.1 145 37.2
Gorai.001G143800 Gossypium raimondii HOM05D001935 ORTHO05D010109 6.0e-21 105.1 140 40.0
Atru.chr5.1024 Acer truncatum HOM05D001935 ORTHO05D010109 1.3e-20 104.0 155 38.7
Gohir.A07G128000 Gossypium hirsutum HOM05D001935 ORTHO05D010109 2.3e-20 103.2 140 39.3
MBI18_g28444_MAGBIO Magnolia biondii HOM05D006641 ORTHO05D007573 3.0e-20 102.8 130 43.1
Manes.01G226900 Manihot esculenta HOM05D001935 ORTHO05D010109 3.9e-20 102.4 145 39.3
Sabra06G0082000 Salix brachista HOM05D001935 ORTHO05D010109 6.6e-20 101.7 154 40.9
Gohir.D07G132400 Gossypium hirsutum HOM05D001935 ORTHO05D010109 1.5e-19 100.5 140 39.3
Rhsim04G0219100 Rhododendron simsii HOM05D003369 ORTHO05D004089 1.5e-19 100.5 87 65.5
ATR0706G209 Amborella trichopoda HOM05D001935 ORTHO05D010109 7.3e-19 98.2 146 42.5
MBI19_g24818_MAGBIO Magnolia biondii HOM05D006641 ORTHO05D007573 6.2e-18 95.1 125 40.0
Gorai.007G123300 Gossypium raimondii HOM05D001935 ORTHO05D010109 8.1e-18 94.7 140 38.6
PGR044G2318 Punica granatum HOM05D001935 ORTHO05D010109 1.4e-17 94.0 146 38.4
Gohir.D11G115100 Gossypium hirsutum HOM05D001935 ORTHO05D010109 6.8e-17 91.7 140 37.9
Ciclev10022487m.g Citrus clementina HOM05D001935 ORTHO05D010109 1.2e-16 90.9 161 38.5
Gohir.A11G109500 Gossypium hirsutum HOM05D001935 ORTHO05D010109 1.2e-16 90.9 140 37.9
Aqoxy2G01830 Aquilegia oxysepala HOM05D001935 ORTHO05D010109 2.6e-16 89.7 155 35.5
EL10As5g23517 Beta vulgaris HOM05D001935 ORTHO05D010109 2.6e-16 89.7 163 33.1
AUR62024666 Chenopodium quinoa HOM05D001935 ORTHO05D010109 1.3e-15 87.4 150 35.3
AUR62011822 Chenopodium quinoa HOM05D001935 ORTHO05D010109 1.7e-15 87.0 146 35.6
Glyma.03G218900 Glycine max HOM05D001935 ORTHO05D010109 3.7e-15 85.9 146 36.3
Psat3g020520 Pisum sativum HOM05D001935 ORTHO05D010109 4.9e-15 85.5 145 37.2
DCAR_005768 Daucus carota HOM05D001935 ORTHO05D010109 6.4e-15 85.1 121 42.1
MELO3C015930.2 Cucumis melo HOM05D001935 ORTHO05D010109 1.1e-14 84.3 147 37.4
Ah.11g049310 Amaranthus hybridus HOM05D001935 ORTHO05D010109 3.2e-14 82.8 167 32.3
Ca_09205_v3 Cicer arietinum L. HOM05D001935 ORTHO05D010109 3.2e-14 82.8 143 37.1
Phvul.001G212300 Phaseolus vulgaris HOM05D001935 ORTHO05D010109 4.1e-14 82.4 148 35.1
unitig_0.g277 Utricularia gibba HOM05D001935 ORTHO05D010109 5.4e-14 82.0 146 38.4
Sed0028026 Sechium edule HOM05D001935 ORTHO05D010109 7.1e-14 81.6 148 36.5
GSVIVG01028106001 Vitis vinifera HOM05D001935 ORTHO05D010109 7.1e-14 81.6 142 36.6
SGA_v2.0_scaffold376G50276 Striga asiatica HOM05D001935 ORTHO05D010109 2.1e-13 80.1 142 37.3
Eucgr.H01053 Eucalyptus grandis HOM05D001935 ORTHO05D010109 3.5e-13 79.3 150 36.7
Lj1g0023097 Lotus japonicus HOM05D001935 ORTHO05D010109 3.5e-13 79.3 143 35.0
Medtr7g109420 Medicago truncatula HOM05D001935 ORTHO05D010109 4.6e-13 79.0 143 35.7
Dinv12075 Davidia involucrata HOM05D001935 ORTHO05D010109 6.0e-13 78.6 60 65.0
VMungo1383G2590 Vigna mungo HOM05D001935 ORTHO05D010109 1.0e-12 77.8 147 32.0
EL10As5g23516 Beta vulgaris HOM05D001935 ORTHO05D010109 1.3e-12 77.4 156 32.1
ClCG09G005160 Citrullus lanatus HOM05D001935 ORTHO05D010109 3.9e-12 75.9 151 35.1
Glyma.19G215700 Glycine max HOM05D001935 ORTHO05D010109 8.6e-12 74.7 115 37.4
TPR.G4060 Trifolium pratense HOM05D001935 ORTHO05D010109 1.1e-11 74.3 143 35.7
Ah.02g112210 Amaranthus hybridus HOM05D001935 ORTHO05D010109 6.2e-10 68.6 165 31.5
Zm00001eb340260 Zea mays HOM05D001935 ORTHO05D010109 1.1e-09 67.8 139 36.0
Sed0011579 Sechium edule HOM05D001935 ORTHO05D010109 1.4e-09 67.4 149 28.9
Sed0010378 Sechium edule HOM05D001935 ORTHO05D001700 8.9e-09 64.7 158 31.0
ECA247G2557 Erigeron canadensis HOM05D006641 ORTHO05D007573 2.0e-08 63.5 123 35.8
AUR62024667 Chenopodium quinoa HOM05D001935 ORTHO05D010109 2.6e-08 63.2 148 32.4
Os01g0304400 Oryza sativa ssp. japonica HOM05D001935 ORTHO05D010109 7.6e-08 61.6 134 36.6
Os05g0552800 Oryza sativa ssp. japonica HOM05D001935 ORTHO05D001700 7.6e-08 61.6 145 29.0
SGA_v2.0_scaffold172G39020 Striga asiatica HOM05D007478 ORTHO05D001700 9.9e-08 61.2 151 30.5
CsaV3_7G029910 Cucumis sativus L. HOM05D001935 ORTHO05D010109 1.3e-07 60.8 75 40.0
Thecc.04G125800 Theobroma cacao HOM05D001935 ORTHO05D001700 2.2e-07 60.1 170 29.4
TWI31G0738 Tripterygium wilfordii HOM05D001935 ORTHO05D001700 2.9e-07 59.7 168 30.4
COL.COLO4_03618 Corchorus olitorius HOM05D001935 ORTHO05D001700 4.9e-07 58.9 173 29.5
Gohir.D08G140200 Gossypium hirsutum HOM05D000483 ORTHO05D000158 6.4e-07 58.5 69 53.6
Gorai.004G144200 Gossypium raimondii HOM05D000483 ORTHO05D000158 6.4e-07 58.5 69 53.6
MELO3C005308.2 Cucumis melo HOM05D001935 ORTHO05D001700 8.4e-07 58.2 156 26.9
Nn3g21670 Nelumbo nucifera HOM05D000483 ORTHO05D000158 8.4e-07 58.2 50 64.0
Sed0026428 Sechium edule HOM05D001935 ORTHO05D001700 1.1e-06 57.8 151 27.8
SGA_v2.0_scaffold334G49062 Striga asiatica HOM05D000483 ORTHO05D000158 1.1e-06 57.8 71 47.9
CsaV3_5G028470 Cucumis sativus L. HOM05D001935 ORTHO05D001700 1.4e-06 57.4 156 26.9
Gohir.A08G119300 Gossypium hirsutum HOM05D000483 ORTHO05D000158 1.9e-06 57.0 69 50.7
TWI79G0540 Tripterygium wilfordii HOM05D001935 ORTHO05D001700 1.9e-06 57.0 170 30.6
ClCG01G006190 Citrullus lanatus HOM05D001935 ORTHO05D001700 2.4e-06 56.6 147 28.6
Cc04_g06130 Coffea canephora HOM05D007478 ORTHO05D001700 2.4e-06 56.6 132 29.5
Sc15g0005840 Simmondsia chinensis HOM05D007478 ORTHO05D001700 2.4e-06 56.6 134 29.9
Duzib133G0729 Durio zibethinus HOM05D001935 ORTHO05D001700 3.2e-06 56.2 170 30.0
Duzib211G0529 Durio zibethinus HOM05D001935 ORTHO05D001700 3.2e-06 56.2 163 30.1
Eucgr.B00987 Eucalyptus grandis HOM05D007478 ORTHO05D001700 3.2e-06 56.2 146 28.8
SEGI_11482 Sequoiadendron giganteum HOM05D001935 ORTHO05D001700 3.2e-06 56.2 155 27.1
Zm00001eb156470 Zea mays HOM05D001935 ORTHO05D001700 3.2e-06 56.2 95 34.7
Zm00001eb440490 Zea mays HOM05D001935 ORTHO05D001700 3.2e-06 56.2 95 34.7
Eucgr.B00885 Eucalyptus grandis HOM05D007478 ORTHO05D001700 4.1e-06 55.8 146 28.8
Thecc.01G312200 Theobroma cacao HOM05D000483 ORTHO05D000158 4.1e-06 55.8 39 71.8
Eucgr.F02810 Eucalyptus grandis HOM05D001935 ORTHO05D001700 5.4e-06 55.5 174 27.6
Hma1.2p1_0212F.1_g090000 Hydrangea macrophylla HOM05D000483 ORTHO05D000158 5.4e-06 55.5 41 68.3
Thecc.02G277900 Theobroma cacao HOM05D001935 ORTHO05D001700 5.4e-06 55.5 168 29.8
Atru.chr1.1571 Acer truncatum HOM05D001935 ORTHO05D001700 7.1e-06 55.1 171 25.7
CSS0034149 Camellia sinensis var. sinensis HOM05D000483 ORTHO05D000158 7.1e-06 55.1 109 35.8
QL01p002600 Quercus lobata HOM05D001935 ORTHO05D001700 7.1e-06 55.1 181 28.7
Sabra12G0031700 Salix brachista HOM05D007478 ORTHO05D001700 7.1e-06 55.1 133 26.3
TWI81G0631 Tripterygium wilfordii HOM05D007478 ORTHO05D001700 7.1e-06 55.1 151 27.8
vmacro15115 Vaccinium macrocarpon HOM05D000483 ORTHO05D000158 7.1e-06 55.1 45 60.0
Cpa.g.sc18.32 Carica papaya HOM05D000483 ORTHO05D000158 9.2e-06 54.7 50 54.0
COL.COLO4_23242 Corchorus olitorius HOM05D000483 ORTHO05D000158 9.2e-06 54.7 68 48.5
Phvul.007G035500 Phaseolus vulgaris HOM05D001935 ORTHO05D001700 9.2e-06 54.7 157 29.9
Potri.010G116000 Populus trichocarpa HOM05D001935 ORTHO05D001700 9.2e-06 54.7 170 28.8
PGR102G2009 Punica granatum HOM05D001935 ORTHO05D001700 9.2e-06 54.7 152 28.9
Sabra08G0096000 Salix brachista HOM05D001935 ORTHO05D001700 9.2e-06 54.7 170 28.2


User provided reference genes

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