Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0195800 Rhododendron simsii HOM05D004738 ORTHO05D006439 4.8e-271 937.2 459 100.0
vmacro16939 Vaccinium macrocarpon HOM05D004738 ORTHO05D006439 2.4e-225 785.4 462 84.2
CSS0005409 Camellia sinensis var. sinensis HOM05D004738 ORTHO05D006439 1.5e-216 756.1 459 82.1
Actinidia08828 Actinidia chinensis HOM05D004738 ORTHO05D006439 1.3e-212 743.0 463 81.4
Dinv30535 Davidia involucrata HOM05D004738 ORTHO05D006439 1.3e-207 726.5 458 79.5
QL05p025470 Quercus lobata HOM05D004738 ORTHO05D006439 2.3e-188 662.5 375 82.7
Prupe.3G075100 Prunus persica HOM05D004738 ORTHO05D006439 7.4e-187 657.5 463 70.8
Cc04_g03640 Coffea canephora HOM05D004738 ORTHO05D006439 1.4e-185 653.3 464 67.9
GSVIVG01017163001 Vitis vinifera HOM05D004738 ORTHO05D006439 4.5e-184 648.3 371 81.9
ECA247G3808 Erigeron canadensis HOM05D004738 ORTHO05D006439 5.9e-184 647.9 414 74.9
CiPaw.02G152800 Carya illinoinensis HOM05D004738 ORTHO05D006439 7.7e-184 647.5 457 71.1
Oeu022417.1 Olea europaea HOM05D004738 ORTHO05D006439 1.3e-183 646.7 459 70.2
FAN05G5687 Fragaria x ananassa HOM05D004738 ORTHO05D006439 1.7e-183 646.4 460 72.0
Lj9A505T66 Lonicera japonica HOM05D004738 ORTHO05D006439 8.5e-183 644.0 374 82.4
Thecc.06G081700 Theobroma cacao HOM05D004738 ORTHO05D006439 8.5e-183 644.0 447 70.5
Nn8g39296 Nelumbo nucifera HOM05D004738 ORTHO05D006439 1.1e-182 643.7 463 69.3
Potri.003G058500 Populus trichocarpa HOM05D004738 ORTHO05D006439 1.1e-182 643.7 431 73.5
RcHm_v2.0_Chr2g0137281 Rosa chinensis HOM05D004738 ORTHO05D006439 1.2e-181 640.2 465 69.0
SGA_v2.0_scaffold37G14802 Striga asiatica HOM05D004738 ORTHO05D006439 1.6e-181 639.8 457 68.1
CANSAT56G4214 Cannabis sativa HOM05D004738 ORTHO05D006439 2.1e-181 639.4 457 70.0
Sabra03G0032700 Salix brachista HOM05D004738 ORTHO05D006439 3.6e-181 638.6 467 69.0
TAR383G0518 Trochodendron aralioides HOM05D004738 ORTHO05D006439 3.6e-181 638.6 370 80.0
Cfa002046 Carpinus fangiana HOM05D004738 ORTHO05D006439 6.1e-181 637.9 458 71.4
Haze_16464 Corylus avellana HOM05D004738 ORTHO05D006439 6.1e-181 637.9 482 68.3
Lsat_1_v5_gn_1_34140 Lactuca sativa HOM05D004738 ORTHO05D006439 6.1e-181 637.9 458 68.3
Nn2g11846 Nelumbo nucifera HOM05D004738 ORTHO05D006439 6.1e-181 637.9 462 69.5
MD17G1198400 Malus domestica HOM05D004738 ORTHO05D006439 7.9e-181 637.5 461 69.0
Eucgr.F02574 Eucalyptus grandis HOM05D004738 ORTHO05D006439 1.0e-180 637.1 376 80.3
FAN02G1331 Fragaria x ananassa HOM05D004738 ORTHO05D006439 1.8e-180 636.3 463 71.3
FAN09G3531 Fragaria x ananassa HOM05D004738 ORTHO05D006439 2.3e-180 636.0 462 70.6
Duzib235G1168 Durio zibethinus HOM05D004738 ORTHO05D006439 5.1e-180 634.8 456 71.1
Nitab4.5_0005784g0040 Nicotiana tabacum HOM05D004738 ORTHO05D006439 1.5e-179 633.3 467 68.7
Gohir.A02G122900 Gossypium hirsutum HOM05D004738 ORTHO05D006439 2.0e-179 632.9 455 69.7
FvH4_6g30840 Fragaria vesca HOM05D004738 ORTHO05D006439 7.4e-179 630.9 385 78.4
Gorai.002G058000 Gossypium raimondii HOM05D004738 ORTHO05D006439 7.4e-179 630.9 455 70.1
MSTRG.11096 Avicennia marina HOM05D004738 ORTHO05D006439 9.7e-179 630.6 464 66.8
HanXRQChr04g0096441 Helianthus annuus HOM05D004738 ORTHO05D006439 1.7e-178 629.8 382 76.2
Gohir.D03G073500 Gossypium hirsutum HOM05D004738 ORTHO05D006439 2.2e-178 629.4 455 70.1
HanXRQChr02g0032631 Helianthus annuus HOM05D004738 ORTHO05D006439 6.3e-178 627.9 426 72.3
PGSC0003DMG400002559 Solanum tuberosum HOM05D004738 ORTHO05D006439 1.1e-177 627.1 468 67.5
VMungo1080G0347 Vigna mungo HOM05D004738 ORTHO05D006439 1.1e-177 627.1 458 69.2
Gorai.009G132100 Gossypium raimondii HOM05D004738 ORTHO05D006439 2.4e-177 625.9 374 79.1
Cpa.g.sc10.174 Carica papaya HOM05D004738 ORTHO05D006439 3.1e-177 625.5 358 81.6
FAN14G4632 Fragaria x ananassa HOM05D004738 ORTHO05D006439 4.1e-177 625.2 472 68.9
DCAR_026302 Daucus carota HOM05D004738 ORTHO05D006439 6.9e-177 624.4 457 68.1
arahy.Tifrunner.gnm1.ann1.2F1L5Z Arachis hypogaea HOM05D004738 ORTHO05D006439 9.1e-177 624.0 454 70.3
Nitab4.5_0002424g0040 Nicotiana tabacum HOM05D004738 ORTHO05D006439 2.0e-176 622.9 484 65.5
Glyma.15G012500 Glycine max HOM05D004738 ORTHO05D006439 2.6e-176 622.5 458 69.0
COL.COLO4_02957 Corchorus olitorius HOM05D004738 ORTHO05D006439 1.3e-175 620.2 358 80.7
Sopen00g008920 Solanum pennellii HOM05D004738 ORTHO05D006439 3.8e-175 618.6 463 67.6
Sopen03g039310 Solanum pennellii HOM05D004738 ORTHO05D006439 3.8e-175 618.6 463 67.6
Gohir.A05G127000 Gossypium hirsutum HOM05D004738 ORTHO05D006439 8.5e-175 617.5 374 78.3
Solyc03g120430.3 Solanum lycopersicum HOM05D004738 ORTHO05D006439 1.9e-174 616.3 460 67.6
Glyma.13G361400 Glycine max HOM05D004738 ORTHO05D006439 4.2e-174 615.1 457 68.5
Medtr2g102510 Medicago truncatula HOM05D004738 ORTHO05D006439 4.2e-174 615.1 457 67.8
Lalb_Chr14g0373571 Lupinus albus HOM05D004738 ORTHO05D006439 1.2e-173 613.6 468 66.2
Ciclev10025569m.g Citrus clementina HOM05D004738 ORTHO05D006439 2.1e-173 612.8 468 67.1
MBI01_g13569_MAGBIO Magnolia biondii HOM05D004738 ORTHO05D006439 2.1e-173 612.8 374 75.9
arahy.Tifrunner.gnm1.ann1.S5ELWT Arachis hypogaea HOM05D004738 ORTHO05D006439 4.7e-173 611.7 388 76.3
Manes.04G120700 Manihot esculenta HOM05D004738 ORTHO05D006439 7.9e-173 610.9 463 67.4
MELO3C023371.2 Cucumis melo HOM05D004738 ORTHO05D006439 1.8e-172 609.8 450 68.4
Migut.I00837 Erythranthe guttata HOM05D004738 ORTHO05D006439 5.2e-172 608.2 471 64.5
Peaxi162Scf00015g00234 Petunia axillaris HOM05D004738 ORTHO05D006439 5.2e-172 608.2 373 77.2
Sc12g0009100 Simmondsia chinensis HOM05D004738 ORTHO05D006439 5.2e-172 608.2 412 71.1
Lj3g0008822 Lotus japonicus HOM05D004738 ORTHO05D006439 1.1e-171 607.1 462 66.9
CsaV3_7G032950 Cucumis sativus L. HOM05D004738 ORTHO05D006439 1.5e-171 606.7 451 67.2
Potri.001G177300 Populus trichocarpa HOM05D004738 ORTHO05D006439 3.3e-171 605.5 387 74.9
Phvul.005G173200 Phaseolus vulgaris HOM05D004738 ORTHO05D006439 4.4e-171 605.1 457 65.9
Aqoxy7G03780 Aquilegia oxysepala HOM05D004738 ORTHO05D006439 5.7e-171 604.7 393 72.8
Hund06597 Selenicereus undatus HOM05D004738 ORTHO05D006439 1.3e-170 603.6 455 67.5
TPR.G37250 Trifolium pratense HOM05D004738 ORTHO05D006439 1.7e-170 603.2 373 75.3
Lalb_Chr22g0351141 Lupinus albus HOM05D004738 ORTHO05D006439 2.2e-170 602.8 466 65.0
Sed0002572 Sechium edule HOM05D004738 ORTHO05D006439 2.2e-170 602.8 372 76.1
Ca_01103_v3 Cicer arietinum L. HOM05D004738 ORTHO05D006439 3.7e-170 602.1 373 76.1
PGR102G2550 Punica granatum HOM05D004738 ORTHO05D006439 2.4e-169 599.4 350 78.9
CSS0037007 Camellia sinensis var. sinensis HOM05D004738 ORTHO05D006439 4.1e-169 598.6 358 80.7
CAN.G438.45 Capsicum annuum HOM05D004738 ORTHO05D006439 7.0e-169 597.8 471 65.0
THA.LOC104808210 Tarenaya hassleriana HOM05D004738 ORTHO05D006439 9.1e-169 597.4 380 75.0
TWI12G0818 Tripterygium wilfordii HOM05D004738 ORTHO05D006439 1.6e-168 596.7 463 65.2
Aa31LG4G650 Aethionema arabicum HOM05D004738 ORTHO05D006439 2.6e-168 595.9 445 67.2
Sp5g35430 Schrenkiella parvula HOM05D004738 ORTHO05D006439 3.5e-168 595.5 373 75.1
Thhalv10018540m.g Eutrema salsugineum HOM05D004738 ORTHO05D006439 1.3e-167 593.6 373 75.6
BraA07t30308Z Brassica rapa HOM05D004738 ORTHO05D006439 1.1e-166 590.5 434 67.3
AL2G41120 Arabidopsis lyrata HOM05D004738 ORTHO05D006439 7.2e-166 587.8 420 69.0
Lj3g0001201 Lotus japonicus HOM05D004738 ORTHO05D006439 9.4e-166 587.4 442 66.1
C06p29130 Brassica napus HOM05D004738 ORTHO05D006439 1.2e-165 587.0 451 64.1
A07p26650 Brassica napus HOM05D004738 ORTHO05D006439 2.7e-165 585.9 451 64.1
BcaC08g45309 Brassica carinata HOM05D004738 ORTHO05D006439 4.7e-165 585.1 434 66.8
C02p37360 Brassica napus HOM05D004738 ORTHO05D006439 4.7e-165 585.1 373 74.5
BolC6t38077H Brassica oleracea HOM05D004738 ORTHO05D006439 4.7e-165 585.1 434 66.8
BcaB02g07276 Brassica carinata HOM05D004738 ORTHO05D006439 1.4e-164 583.6 376 73.4
AUR62011604 Chenopodium quinoa HOM05D004738 ORTHO05D006439 1.4e-164 583.6 459 63.2
BolC2t09746H Brassica oleracea HOM05D004738 ORTHO05D006439 2.3e-164 582.8 373 74.0
CARHR074130 Cardamine hirsuta HOM05D004738 ORTHO05D006439 2.3e-164 582.8 460 65.2
PSO210G3793 Papaver somniferum HOM05D004738 ORTHO05D006439 3.0e-164 582.4 478 62.6
Carub.0002s2719 Capsella rubella HOM05D004738 ORTHO05D006439 6.7e-164 581.3 372 74.2
A02p23600 Brassica napus HOM05D004738 ORTHO05D006439 8.8e-164 580.9 373 74.0
BraA02t07352Z Brassica rapa HOM05D004738 ORTHO05D006439 8.8e-164 580.9 373 74.0
BraA07t32032Z Brassica rapa HOM05D004738 ORTHO05D006439 2.0e-163 579.7 373 74.0
BcaC08g47585 Brassica carinata HOM05D004738 ORTHO05D006439 2.6e-163 579.3 373 74.0
AUR62016418 Chenopodium quinoa HOM05D004738 ORTHO05D006439 2.6e-163 579.3 469 62.3
BcaB02g08689 Brassica carinata HOM05D004738 ORTHO05D006439 7.5e-163 577.8 434 66.4
A07p45280 Brassica napus HOM05D004738 ORTHO05D006439 7.5e-163 577.8 373 74.0
C06p54140 Brassica napus HOM05D004738 ORTHO05D006439 7.5e-163 577.8 373 73.7
THA.LOC104812476 Tarenaya hassleriana HOM05D004738 ORTHO05D006439 1.7e-162 576.6 428 66.1
BcaB05g25272 Brassica carinata HOM05D004738 ORTHO05D006439 7.0e-161 571.2 372 73.1
CDE06G1313 Ceratophyllum demersum HOM05D004738 ORTHO05D006439 9.1e-161 570.9 371 72.2
EL10Ac9g21974 Beta vulgaris HOM05D004738 ORTHO05D006439 2.0e-160 569.7 445 64.7
PSO210G6241 Papaver somniferum HOM05D004738 ORTHO05D006439 7.7e-160 567.8 467 60.6
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 1.3e-159 567.0 356 76.7
BolC6t40426H Brassica oleracea HOM05D004738 ORTHO05D006439 1.1e-158 563.9 404 68.3
ClCG09G002360 Citrullus lanatus HOM05D004738 ORTHO05D006439 3.6e-157 558.9 396 70.5
Duzib192G0909 Durio zibethinus HOM05D004738 ORTHO05D006439 1.0e-156 557.4 329 79.3
Os01g0682500 Oryza sativa ssp. japonica HOM05D004738 ORTHO05D006439 1.0e-156 557.4 361 72.3
Gohir.D05G127900 Gossypium hirsutum HOM05D004738 ORTHO05D006439 4.4e-155 552.0 316 82.9
ATR0083G024 Amborella trichopoda HOM05D004738 ORTHO05D006439 1.7e-151 540.0 372 67.5
Zm00001eb267390 Zea mays HOM05D004738 ORTHO05D006439 2.1e-149 533.1 340 72.6
Zm00001eb156570 Zea mays HOM05D004738 ORTHO05D006439 3.1e-145 519.2 353 69.7
Nn2g11397 Nelumbo nucifera HOM05D004738 ORTHO05D006439 1.1e-142 510.8 355 68.5
Oeu033460.1 Olea europaea HOM05D004738 ORTHO05D006439 7.0e-137 491.5 375 64.8
HPP92_011481 Vanilla planifolia HOM05D004738 ORTHO05D006439 1.6e-136 490.3 360 68.1
unitig_21.g20511 Utricularia gibba HOM05D004738 ORTHO05D006439 5.9e-136 488.4 403 59.8
SHI09688 Sapria himalayana HOM05D004738 ORTHO05D006439 3.2e-129 466.1 343 65.6
AT1G80380 Arabidopsis thaliana HOM05D004738 ORTHO05D006439 4.1e-129 465.7 294 74.5
Pp3c18_16070 Physcomitrium patens HOM05D004738 ORTHO05D006439 7.8e-128 461.5 330 64.8
HPP92_011544 Vanilla planifolia HOM05D004738 ORTHO05D006439 2.0e-123 446.8 327 67.0
SEGI_20298 Sequoiadendron giganteum HOM05D004738 ORTHO05D006439 1.9e-121 440.3 368 57.1
AagrBONN_evm.TU.Sc2ySwM_368.190 Anthoceros agrestis HOM05D004738 ORTHO05D006439 5.6e-118 428.7 371 56.6
Psat5g299520 Pisum sativum HOM05D004738 ORTHO05D006439 3.6e-117 426.0 275 73.5
SMO147G0425 Selaginella moellendorffii HOM05D004738 ORTHO05D006439 5.8e-115 418.7 336 57.1
BcaC03g15976 Brassica carinata HOM05D004738 ORTHO05D006439 3.2e-113 412.9 243 80.7
Mapoly0010s0209 Marchantia polymorpha HOM05D004738 ORTHO05D006439 4.3e-110 402.5 331 56.5
CBR_g49861 Chara braunii HOM05D004738 ORTHO05D006439 5.8e-107 392.1 337 54.3
arahy.Tifrunner.gnm1.ann1.7R7SHJ Arachis hypogaea HOM05D004738 ORTHO05D006439 1.9e-94 350.5 285 62.5
Cre12.g542300 Chlamydomonas reinhardtii HOM05D004738 ORTHO05D006439 3.8e-90 336.3 330 49.1
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 4.2e-89 332.8 272 62.9
MCO11G539 Micromonas commoda HOM05D004738 ORTHO05D006439 8.7e-79 298.5 347 42.7
PRCOL_00005044 Prasinoderma coloniale HOM05D004738 ORTHO05D006439 1.7e-74 284.3 326 45.4
Dinv38066 Davidia involucrata HOM05D004738 ORTHO05D006439 6.9e-68 262.3 146 86.3
Hund00584 Selenicereus undatus HOM05D004738 ORTHO05D006439 4.5e-59 233.0 173 65.3
arahy.Tifrunner.gnm1.ann1.CI84PE Arachis hypogaea HOM05D004738 ORTHO05D006439 5.9e-59 232.6 197 61.9
TAR636G0147 Trochodendron aralioides HOM05D004738 ORTHO05D051490 1.0e-39 168.7 164 48.2
TAR636G3653 Trochodendron aralioides HOM05D004738 ORTHO05D051490 5.2e-39 166.4 164 47.6
Dinv38065 Davidia involucrata HOM05D004738 ORTHO05D006439 1.5e-38 164.9 80 96.2
Nn4g26563 Nelumbo nucifera HOM05D004738 ORTHO05D006439 2.2e-37 161.0 241 41.9
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 1.6e-35 154.8 283 36.4
Ah.09g223940 Amaranthus hybridus HOM05D004738 ORTHO05D001643 1.4e-31 141.7 95 73.7
Sabra01G0149000 Salix brachista HOM05D004738 ORTHO05D006439 1.2e-27 128.6 129 50.4
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 8.3e-21 105.9 126 44.4
Nn1g05393 Nelumbo nucifera HOM05D004738 ORTHO05D280673 2.5e-17 94.4 82 52.4
Pp3c21_6430 Physcomitrium patens HOM05D004738 ORTHO05D314778 9.5e-09 65.9 52 50.0
Nn3g18662 Nelumbo nucifera HOM05D004738 ORTHO05D273315 1.5e-06 58.5 46 54.3


User provided reference genes

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