Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0192700 Rhododendron simsii HOM05D004554 ORTHO05D005360 2.7e-39 164.9 83 100.0
CSS0017610 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 2.4e-35 151.8 81 91.4
CAN.G395.49 Capsicum annuum HOM05D004554 ORTHO05D005360 2.4e-35 151.8 81 92.6
PGSC0003DMG401028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 3.1e-35 151.4 81 91.4
Sopen06g025310 Solanum pennellii HOM05D004554 ORTHO05D005360 5.3e-35 150.6 79 93.7
Rhsim08G0215600 Rhododendron simsii HOM05D004554 ORTHO05D005360 9.1e-35 149.8 79 92.4
HanXRQChr16g0500531 Helianthus annuus HOM05D004554 ORTHO05D005360 2.0e-34 148.7 79 91.1
Dinv30578 Davidia involucrata HOM05D004554 ORTHO05D005360 2.6e-34 148.3 77 93.5
HanXRQChr09g0274941 Helianthus annuus HOM05D004554 ORTHO05D005360 2.6e-34 148.3 79 89.9
SalBow2G1085 Salvia bowleyana HOM05D004554 ORTHO05D005360 2.6e-34 148.3 79 92.4
SalBow3G2596 Salvia bowleyana HOM05D004554 ORTHO05D005360 2.6e-34 148.3 79 91.1
Actinidia08808 Actinidia chinensis HOM05D004554 ORTHO05D005360 3.4e-34 147.9 77 93.5
Ah.11g047570 Amaranthus hybridus HOM05D004554 ORTHO05D005360 3.4e-34 147.9 80 90.0
CSS0011930 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 3.4e-34 147.9 77 93.5
PGSC0003DMG402028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 3.4e-34 147.9 77 93.5
vmacro16909 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 3.4e-34 147.9 81 91.4
CSS0043216 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 4.5e-34 147.5 77 92.2
GSVIVG01017278001 Vitis vinifera HOM05D004554 ORTHO05D005360 4.5e-34 147.5 79 91.1
Cc02_g38630 Coffea canephora HOM05D004554 ORTHO05D005360 1.3e-33 146.0 79 89.9
MSTRG.4713 Avicennia marina HOM05D004554 ORTHO05D005360 1.7e-33 145.6 77 90.9
Migut.D01058 Erythranthe guttata HOM05D004554 ORTHO05D005360 1.7e-33 145.6 77 90.9
Oeu053426.1 Olea europaea HOM05D004554 ORTHO05D005360 2.9e-33 144.8 79 89.9
Hund00544 Selenicereus undatus HOM05D004554 ORTHO05D005360 6.5e-33 143.7 77 89.6
Nitab4.5_0005235g0030 Nicotiana tabacum HOM05D004554 ORTHO05D005360 8.5e-33 143.3 78 91.0
QL06p045297 Quercus lobata HOM05D004554 ORTHO05D005360 8.5e-33 143.3 81 87.7
Sc10g0005760 Simmondsia chinensis HOM05D004554 ORTHO05D005360 8.5e-33 143.3 77 90.9
Solyc06g068030.3 Solanum lycopersicum HOM05D004554 ORTHO05D005360 8.5e-33 143.3 78 91.0
Atru.chr2.1839 Acer truncatum HOM05D004554 ORTHO05D005360 1.4e-32 142.5 79 88.6
Nitab4.5_0000620g0010 Nicotiana tabacum HOM05D004554 ORTHO05D005360 1.4e-32 142.5 78 91.0
Oeu052276.1 Olea europaea HOM05D004554 ORTHO05D005360 1.4e-32 142.5 77 90.9
ECA232G3015 Erigeron canadensis HOM05D004554 ORTHO05D005360 1.9e-32 142.1 77 87.0
MD08G1243100 Malus domestica HOM05D004554 ORTHO05D005360 1.9e-32 142.1 82 85.4
COL.COLO4_28385 Corchorus olitorius HOM05D004554 ORTHO05D005360 3.2e-32 141.4 79 87.3
Eucgr.E03470 Eucalyptus grandis HOM05D004554 ORTHO05D005360 3.2e-32 141.4 77 89.6
PSO170G6065 Papaver somniferum HOM05D004554 ORTHO05D005360 3.2e-32 141.4 77 84.4
BcaC04g21821 Brassica carinata HOM05D004554 ORTHO05D005360 4.2e-32 141.0 79 84.8
BolC9t55589H Brassica oleracea HOM05D004554 ORTHO05D005360 4.2e-32 141.0 79 84.8
QL10p039943 Quercus lobata HOM05D004554 ORTHO05D005360 4.2e-32 141.0 79 87.3
Hund06576 Selenicereus undatus HOM05D004554 ORTHO05D005360 4.2e-32 141.0 79 87.3
vmacro21051 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 4.2e-32 141.0 80 87.5
CDE01G0639 Ceratophyllum demersum HOM05D004554 ORTHO05D005360 7.2e-32 140.2 77 85.7
ATR0138G017 Amborella trichopoda HOM05D004554 ORTHO05D005360 9.4e-32 139.8 78 87.2
Duzib268G0645 Durio zibethinus HOM05D004554 ORTHO05D005360 9.4e-32 139.8 77 88.3
MD15G1436700 Malus domestica HOM05D004554 ORTHO05D005360 9.4e-32 139.8 81 85.2
PGR119G2244 Punica granatum HOM05D004554 ORTHO05D005360 9.4e-32 139.8 77 88.3
Sc25g0002650 Simmondsia chinensis HOM05D004554 ORTHO05D005360 9.4e-32 139.8 77 89.6
TWI75G0475 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 9.4e-32 139.8 77 87.0
CSS0029734 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 1.2e-31 139.4 78 87.2
Lalb_Chr08g0237951 Lupinus albus HOM05D004554 ORTHO05D005360 1.2e-31 139.4 79 84.8
Aa31sc43G10 Aethionema arabicum HOM05D004554 ORTHO05D005360 1.6e-31 139.0 79 83.5
CiPaw.03G115100 Carya illinoinensis HOM05D004554 ORTHO05D005360 1.6e-31 139.0 77 88.3
Thecc.04G171500 Theobroma cacao HOM05D004554 ORTHO05D005360 1.6e-31 139.0 77 88.3
arahy.Tifrunner.gnm1.ann1.HM0BYB Arachis hypogaea HOM05D004554 ORTHO05D005360 2.1e-31 138.7 79 84.8
arahy.Tifrunner.gnm1.ann1.NV3HYF Arachis hypogaea HOM05D004554 ORTHO05D005360 2.1e-31 138.7 79 84.8
arahy.Tifrunner.gnm1.ann1.YS1HQ5 Arachis hypogaea HOM05D004554 ORTHO05D005360 2.1e-31 138.7 79 84.8
CANSAT56G2605 Cannabis sativa HOM05D004554 ORTHO05D005360 2.1e-31 138.7 77 87.0
ClCG02G000050 Citrullus lanatus HOM05D004554 ORTHO05D005360 2.1e-31 138.7 79 84.8
CsaV3_2G019710 Cucumis sativus L. HOM05D004554 ORTHO05D005360 2.1e-31 138.7 79 84.8
TWI31G0401 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 2.1e-31 138.7 77 87.0
A07p45180 Brassica napus HOM05D004554 ORTHO05D005360 2.7e-31 138.3 79 83.5
C06p54030 Brassica napus HOM05D004554 ORTHO05D005360 2.7e-31 138.3 79 83.5
BolC6t40416H Brassica oleracea HOM05D004554 ORTHO05D005360 2.7e-31 138.3 79 83.5
BraA07t32021Z Brassica rapa HOM05D004554 ORTHO05D005360 2.7e-31 138.3 79 83.5
Gohir.D02G111000 Gossypium hirsutum HOM05D004554 ORTHO05D005360 3.6e-31 137.9 77 85.7
Gorai.005G125900 Gossypium raimondii HOM05D004554 ORTHO05D005360 3.6e-31 137.9 77 85.7
Manes.04G101300 Manihot esculenta HOM05D004554 ORTHO05D005360 3.6e-31 137.9 77 87.0
Manes.11G068800 Manihot esculenta HOM05D004554 ORTHO05D005360 3.6e-31 137.9 77 87.0
Potri.003G183400 Populus trichocarpa HOM05D004554 ORTHO05D005360 3.6e-31 137.9 77 85.7
SEGI_00661 Sequoiadendron giganteum HOM05D004554 ORTHO05D005360 3.6e-31 137.9 77 83.1
arahy.Tifrunner.gnm1.ann1.Z4TQX9 Arachis hypogaea HOM05D004554 ORTHO05D005360 4.7e-31 137.5 79 83.5
Ciclev10022803m.g Citrus clementina HOM05D004554 ORTHO05D005360 4.7e-31 137.5 77 87.0
Duzib151G1169 Durio zibethinus HOM05D004554 ORTHO05D005360 4.7e-31 137.5 77 87.0
FvH4_7g07440 Fragaria vesca HOM05D004554 ORTHO05D005360 4.7e-31 137.5 81 81.5
FAN06G4122 Fragaria x ananassa HOM05D004554 ORTHO05D005360 4.7e-31 137.5 81 81.5
FAN10G0691 Fragaria x ananassa HOM05D004554 ORTHO05D005360 4.7e-31 137.5 81 81.5
Hma1.2p1_0515F.1_g170190 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 4.7e-31 137.5 77 87.0
Glyma.04G207300 Glycine max HOM05D004554 ORTHO05D005360 6.1e-31 137.1 77 85.7
Phvul.009G152000 Phaseolus vulgaris HOM05D004554 ORTHO05D005360 6.1e-31 137.1 77 85.7
CARHR074020 Cardamine hirsuta HOM05D004554 ORTHO05D005360 7.9e-31 136.7 77 83.1
MELO3C023193.2 Cucumis melo HOM05D004554 ORTHO05D005360 7.9e-31 136.7 77 84.4
Lsat_1_v5_gn_4_105840 Lactuca sativa HOM05D004554 ORTHO05D005360 7.9e-31 136.7 75 85.3
Lj1g0025297 Lotus japonicus HOM05D004554 ORTHO05D005360 7.9e-31 136.7 77 84.4
Psat5g058840 Pisum sativum HOM05D004554 ORTHO05D005360 7.9e-31 136.7 77 84.4
Potri.001G043400 Populus trichocarpa HOM05D004554 ORTHO05D005360 7.9e-31 136.7 77 85.7
Sabra01G0029900 Salix brachista HOM05D004554 ORTHO05D005360 7.9e-31 136.7 79 84.8
TPR.G7873 Trifolium pratense HOM05D004554 ORTHO05D005360 7.9e-31 136.7 77 84.4
AL2G40970 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 1.0e-30 136.3 77 83.1
AL6G52910 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 1.0e-30 136.3 77 83.1
AT1G80500 Arabidopsis thaliana HOM05D004554 ORTHO05D005360 1.0e-30 136.3 77 83.1
Carub.0002s1001 Capsella rubella HOM05D004554 ORTHO05D005360 1.0e-30 136.3 77 83.1
Sp5g35300 Schrenkiella parvula HOM05D004554 ORTHO05D005360 1.0e-30 136.3 77 83.1
Glyma.06G158300 Glycine max HOM05D004554 ORTHO05D005360 1.4e-30 136.0 77 84.4
THA.LOC104819505 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 1.4e-30 136.0 77 83.1
CiPaw.04G077100 Carya illinoinensis HOM05D004554 ORTHO05D005360 1.8e-30 135.6 77 83.1
Gohir.A02G092800 Gossypium hirsutum HOM05D004554 ORTHO05D005360 1.8e-30 135.6 77 84.4
EL10Ac6g14261 Beta vulgaris HOM05D004554 ORTHO05D005360 3.0e-30 134.8 75 88.0
Zm00001eb111730 Zea mays HOM05D004554 ORTHO05D005360 3.9e-30 134.4 77 80.5
Duzib212G0633 Durio zibethinus HOM05D004554 ORTHO05D005360 5.1e-30 134.0 77 81.8
Sp2g09550 Schrenkiella parvula HOM05D004554 ORTHO05D005360 5.1e-30 134.0 77 81.8
FAN03G1590 Fragaria x ananassa HOM05D004554 ORTHO05D005360 6.7e-30 133.7 81 79.0
Sed0018246 Sechium edule HOM05D004554 ORTHO05D005360 6.7e-30 133.7 77 81.8
A09p21270 Brassica napus HOM05D003109 ORTHO05D003578 1.5e-29 132.5 75 84.0
BraA09t37732Z Brassica rapa HOM05D004554 ORTHO05D005360 1.5e-29 132.5 75 84.0
unitig_899.g14783 Utricularia gibba HOM05D004554 ORTHO05D005360 1.5e-29 132.5 76 81.6
Prupe.1G580600 Prunus persica HOM05D004554 ORTHO05D005360 2.0e-29 132.1 75 86.7
THA.LOC104807163 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 2.0e-29 132.1 77 81.8
PSO541G2287 Papaver somniferum HOM05D004554 ORTHO05D005360 2.6e-29 131.7 77 83.1
PSO675G8776 Papaver somniferum HOM05D004554 ORTHO05D005360 2.6e-29 131.7 77 83.1
SGA_v2.0_scaffold16G07612 Striga asiatica HOM05D004554 ORTHO05D005360 3.3e-29 131.3 75 82.7
Os02g0613600 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 4.4e-29 131.0 77 77.9
DCAR_025490 Daucus carota HOM05D004554 ORTHO05D005360 7.4e-29 130.2 78 79.5
RcHm_v2.0_Chr1g0339521 Rosa chinensis HOM05D004554 ORTHO05D005360 7.4e-29 130.2 75 84.0
SGA_v2.0_scaffold117G32370 Striga asiatica HOM05D004554 ORTHO05D005360 9.7e-29 129.8 70 88.6
BcaB07g30930 Brassica carinata HOM05D004554 ORTHO05D005360 2.2e-28 128.6 73 82.2
FAN01G0304 Fragaria x ananassa HOM05D004554 ORTHO05D007400 2.8e-28 128.3 75 82.7
Gohir.A09G212650 Gossypium hirsutum HOM05D004554 ORTHO05D005360 3.7e-28 127.9 78 82.1
Mapoly0010s0129 Marchantia polymorpha HOM05D004554 ORTHO05D005360 6.3e-28 127.1 77 75.3
Zm00001eb331160 Zea mays HOM05D004554 ORTHO05D005360 8.2e-28 126.7 78 78.2
Pp3c14_6180 Physcomitrium patens HOM05D004554 ORTHO05D005360 3.1e-27 124.8 77 74.0
Hma1.2p1_1324F.1_g275710 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 7.0e-27 123.6 67 91.0
Medtr1g102650 Medicago truncatula HOM05D004554 ORTHO05D005360 9.1e-27 123.2 71 83.1
VMungo1309G1053 Vigna mungo HOM05D004554 ORTHO05D005360 9.1e-27 123.2 71 84.5
AagrBONN_evm.TU.Sc2ySwM_362.569 Anthoceros agrestis HOM05D004554 ORTHO05D005360 1.6e-26 122.5 77 71.4
Lj1g0023737 Lotus japonicus HOM05D004554 ORTHO05D005360 2.6e-26 121.7 76 76.3
Gohir.D09G206200 Gossypium hirsutum HOM05D004554 ORTHO05D005360 6.5e-25 117.1 77 75.3
Gorai.006G230100 Gossypium raimondii HOM05D004554 ORTHO05D005360 6.5e-25 117.1 77 75.3
Peaxi162Scf00207g00743 Petunia axillaris HOM05D004554 ORTHO05D005360 1.4e-22 109.4 56 94.6
Lsat_1_v5_gn_5_132260 Lactuca sativa HOM05D004554 ORTHO05D005360 2.3e-22 108.6 71 74.6
Thhalv10019800m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 1.1e-21 106.3 105 55.2
SMO244G0023 Selaginella moellendorffii HOM05D004554 ORTHO05D005360 2.6e-21 105.1 70 64.3
TAR626G1579 Trochodendron aralioides HOM05D004554 ORTHO05D005360 4.4e-21 104.4 54 92.6
CBR_g36380 Chara braunii HOM05D004554 ORTHO05D005360 1.7e-20 102.4 75 60.0
Ca_17005_v3 Cicer arietinum L. HOM05D004554 ORTHO05D005360 4.8e-20 100.9 57 84.2
Medtr3g097015 Medicago truncatula HOM05D004554 ORTHO05D005360 8.2e-20 100.1 56 85.7
C09p27060 Brassica napus HOM05D004554 ORTHO05D005360 2.7e-18 95.1 53 83.0
Os04g0503800 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 2.2e-17 92.0 51 80.4
MCO03G231 Micromonas commoda HOM05D004554 ORTHO05D005360 2.9e-17 91.7 84 51.2
arahy.Tifrunner.gnm1.ann1.MTW2QA Arachis hypogaea HOM05D004554 ORTHO05D005360 4.4e-13 77.8 45 80.0
PRCOL_00001690 Prasinoderma coloniale HOM05D004554 ORTHO05D005360 2.2e-12 75.5 69 47.8
Lj5A69T38 Lonicera japonica HOM05D004554 ORTHO05D005360 9.1e-11 70.1 81 50.6
Sed0002995 Sechium edule HOM05D004554 ORTHO05D005360 3.5e-10 68.2 41 73.2
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 1.0e-09 66.6 74 43.2
QL11p051435 Quercus lobata HOM05D004554 ORTHO05D005360 2.3e-06 55.5 29 89.7


User provided reference genes

Program Settings