Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0185400 Rhododendron simsii HOM05D005382 ORTHO05D006795 8.3e-121 437.2 243 100.0
Actinidia08935 Actinidia chinensis HOM05D005382 ORTHO05D006795 1.1e-80 303.9 243 68.7
vmacro16842 Vaccinium macrocarpon HOM05D005382 ORTHO05D006795 1.4e-80 303.5 199 82.9
CSS0039254 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 4.5e-74 282.0 244 70.5
Hma1.2p1_0329F.1_g127290 Hydrangea macrophylla HOM05D005382 ORTHO05D006795 4.9e-73 278.5 244 66.4
Cc04_g05300 Coffea canephora HOM05D005382 ORTHO05D006795 2.5e-72 276.2 243 60.9
Rhsim08G0203100 Rhododendron simsii HOM05D005382 ORTHO05D006795 9.3e-72 274.2 239 65.7
MSTRG.22842 Avicennia marina HOM05D005382 ORTHO05D006795 5.1e-70 268.5 249 61.4
DCAR_021374 Daucus carota HOM05D005382 ORTHO05D006795 2.5e-69 266.2 243 62.6
Lsat_1_v5_gn_1_30801 Lactuca sativa HOM05D005382 ORTHO05D006795 3.3e-69 265.8 240 62.1
CAN.G1008.7 Capsicum annuum HOM05D005382 ORTHO05D006795 1.6e-68 263.5 241 60.6
Migut.I00626 Erythranthe guttata HOM05D005382 ORTHO05D006795 2.2e-68 263.1 240 60.4
Dinv21426 Davidia involucrata HOM05D005382 ORTHO05D006795 4.8e-68 261.9 243 67.9
ECA232G4196 Erigeron canadensis HOM05D005382 ORTHO05D006795 6.3e-68 261.5 235 61.7
Manes.11G069200 Manihot esculenta HOM05D005382 ORTHO05D006795 1.4e-67 260.4 237 61.2
Nitab4.5_0004738g0090 Nicotiana tabacum HOM05D005382 ORTHO05D006795 1.8e-67 260.0 242 62.0
CiPaw.01G256500 Carya illinoinensis HOM05D005382 ORTHO05D006795 3.1e-67 259.2 241 62.2
Potri.001G041900 Populus trichocarpa HOM05D005382 ORTHO05D006795 3.1e-67 259.2 235 61.3
Thecc.06G046600 Theobroma cacao HOM05D005382 ORTHO05D006795 6.9e-67 258.1 237 59.1
TAR625G1145 Trochodendron aralioides HOM05D005382 ORTHO05D006795 6.9e-67 258.1 226 67.3
ECA247G2189 Erigeron canadensis HOM05D005382 ORTHO05D006795 9.0e-67 257.7 231 62.3
MD17G1226400 Malus domestica HOM05D005382 ORTHO05D006795 1.5e-66 256.9 238 61.3
Peaxi162Scf00314g01032 Petunia axillaris HOM05D005382 ORTHO05D006795 1.5e-66 256.9 240 65.4
MSTRG.9395 Avicennia marina HOM05D005382 ORTHO05D006795 3.4e-66 255.8 232 62.9
Potri.003G184925 Populus trichocarpa HOM05D005382 ORTHO05D006795 3.4e-66 255.8 229 62.0
Sopen03g036580 Solanum pennellii HOM05D005382 ORTHO05D006795 7.7e-66 254.6 240 64.6
HanXRQChr04g0100021 Helianthus annuus HOM05D005382 ORTHO05D006795 1.0e-65 254.2 241 58.1
Nitab4.5_0002700g0060 Nicotiana tabacum HOM05D005382 ORTHO05D006795 1.0e-65 254.2 233 62.2
COL.COLO4_26772 Corchorus olitorius HOM05D005382 ORTHO05D006795 8.5e-65 251.1 247 60.3
Solyc03g117670.4 Solanum lycopersicum HOM05D005382 ORTHO05D006795 8.5e-65 251.1 229 67.2
CiPaw.02G163400 Carya illinoinensis HOM05D005382 ORTHO05D006795 1.9e-64 250.0 241 60.2
Sabra03G0135500 Salix brachista HOM05D005382 ORTHO05D006795 2.5e-64 249.6 229 59.4
HanXRQChr09g0274181 Helianthus annuus HOM05D005382 ORTHO05D006795 3.2e-64 249.2 233 59.7
MD09G1227600 Malus domestica HOM05D005382 ORTHO05D006795 3.2e-64 249.2 239 60.7
Gorai.007G085500 Gossypium raimondii HOM05D005382 ORTHO05D006795 2.1e-63 246.5 238 59.7
Lsat_1_v5_gn_4_85061 Lactuca sativa HOM05D005382 ORTHO05D006795 3.6e-63 245.7 243 57.2
QL05p036845 Quercus lobata HOM05D005382 ORTHO05D006795 6.1e-63 245.0 194 67.5
Sabra01G0028700 Salix brachista HOM05D005382 ORTHO05D006795 6.1e-63 245.0 235 58.3
RcHm_v2.0_Chr2g0132311 Rosa chinensis HOM05D005382 ORTHO05D006795 1.0e-62 244.2 231 59.7
Gohir.A11G075200 Gossypium hirsutum HOM05D005382 ORTHO05D006795 1.4e-62 243.8 224 60.7
FvH4_6g28270 Fragaria vesca HOM05D005382 ORTHO05D006795 2.3e-62 243.0 231 59.3
FAN05G5289 Fragaria x ananassa HOM05D005382 ORTHO05D006795 2.3e-62 243.0 231 59.3
PGR102G0492 Punica granatum HOM05D005382 ORTHO05D006795 2.3e-62 243.0 246 58.1
Glyma.08G220400 Glycine max HOM05D005382 ORTHO05D006795 8.8e-62 241.1 231 59.7
MSTRG.11221 Avicennia marina HOM05D005382 ORTHO05D006795 1.5e-61 240.4 243 57.2
EL10Ac8g19398 Beta vulgaris HOM05D005382 ORTHO05D006795 1.5e-61 240.4 232 58.6
Nn8g40079 Nelumbo nucifera HOM05D005382 ORTHO05D006795 2.0e-61 240.0 243 58.8
FAN09G0036 Fragaria x ananassa HOM05D005382 ORTHO05D006795 2.5e-61 239.6 228 58.8
SalBow1G1272 Salvia bowleyana HOM05D005382 ORTHO05D006795 3.3e-61 239.2 268 54.1
Cfa001857 Carpinus fangiana HOM05D005382 ORTHO05D006795 5.7e-61 238.4 197 66.5
CsaV3_7G031710 Cucumis sativus L. HOM05D005382 ORTHO05D006795 5.7e-61 238.4 234 59.8
Manes.04G100900 Manihot esculenta HOM05D005382 ORTHO05D006795 5.7e-61 238.4 240 60.4
Sc12g0008250 Simmondsia chinensis HOM05D005382 ORTHO05D006795 7.4e-61 238.0 235 58.3
Lj5A81T85 Lonicera japonica HOM05D005382 ORTHO05D006795 9.7e-61 237.7 187 74.9
Eucgr.J03130 Eucalyptus grandis HOM05D005382 ORTHO05D006795 2.8e-60 236.1 236 57.2
SGA_v2.0_scaffold515G52664 Striga asiatica HOM05D003096 ORTHO05D003521 2.8e-60 236.1 240 56.7
Nn8g40087 Nelumbo nucifera HOM05D005382 ORTHO05D006795 1.1e-59 234.2 243 57.2
GSVIVG01016103001 Vitis vinifera HOM05D005382 ORTHO05D006795 1.4e-59 233.8 238 58.8
AUR62032996 Chenopodium quinoa HOM05D005382 ORTHO05D006795 1.8e-59 233.4 229 57.2
MELO3C023486.2 Cucumis melo HOM05D005382 ORTHO05D006795 1.8e-59 233.4 234 59.4
Lj3g0027435 Lotus japonicus HOM05D005382 ORTHO05D006795 1.8e-59 233.4 238 56.3
VMungo0647G2390 Vigna mungo HOM05D005382 ORTHO05D006795 1.8e-59 233.4 243 60.9
ClCG09G003490 Citrullus lanatus HOM05D005382 ORTHO05D006795 2.4e-59 233.0 234 59.4
AT1G80940 Arabidopsis thaliana HOM05D005382 ORTHO05D006795 4.1e-59 232.3 243 55.6
Lalb_Chr25g0278731 Lupinus albus HOM05D005382 ORTHO05D006795 5.3e-59 231.9 225 56.9
Medtr4g007700 Medicago truncatula HOM05D005382 ORTHO05D006795 5.3e-59 231.9 220 58.6
Ciclev10026461m.g Citrus clementina HOM05D005382 ORTHO05D006795 9.1e-59 231.1 240 57.1
Gohir.D11G079900 Gossypium hirsutum HOM05D005382 ORTHO05D006795 9.1e-59 231.1 221 59.7
THA.LOC104808172 Tarenaya hassleriana HOM05D005382 ORTHO05D006795 9.1e-59 231.1 239 53.6
TWI12G1456 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 9.1e-59 231.1 236 56.4
Eucgr.F03985 Eucalyptus grandis HOM05D005382 ORTHO05D006795 1.5e-58 230.3 233 58.4
BcaB02g07237 Brassica carinata HOM05D005382 ORTHO05D006795 2.6e-58 229.6 240 54.6
BcaB02g08711 Brassica carinata HOM05D005382 ORTHO05D006795 4.5e-58 228.8 241 54.8
C06p53570 Brassica napus HOM05D005382 ORTHO05D006795 5.9e-58 228.4 225 56.9
Sp5g34800 Schrenkiella parvula HOM05D005382 ORTHO05D006795 5.9e-58 228.4 232 54.7
Glyma.07G021400 Glycine max HOM05D005382 ORTHO05D006795 7.7e-58 228.0 231 61.9
Haze_16689 Corylus avellana HOM05D005382 ORTHO05D006795 1.3e-57 227.3 140 81.4
Carub.0002s2660 Capsella rubella HOM05D005382 ORTHO05D006795 1.7e-57 226.9 239 54.8
Thhalv10019121m.g Eutrema salsugineum HOM05D005382 ORTHO05D006795 1.7e-57 226.9 240 54.2
MBI15_g08404_MAGBIO Magnolia biondii HOM05D005382 ORTHO05D006795 1.7e-57 226.9 248 54.4
Phvul.008G253200 Phaseolus vulgaris HOM05D005382 ORTHO05D006795 1.7e-57 226.9 243 58.8
A07p44750 Brassica napus HOM05D005382 ORTHO05D006795 2.2e-57 226.5 241 53.9
FAN02G4537 Fragaria x ananassa HOM05D005382 ORTHO05D006795 2.9e-57 226.1 193 64.8
Prupe.3G103600 Prunus persica HOM05D005382 ORTHO05D006795 2.9e-57 226.1 141 80.1
BcaC08g47533 Brassica carinata HOM05D005382 ORTHO05D006795 3.8e-57 225.7 241 54.4
BolC6t40373H Brassica oleracea HOM05D005382 ORTHO05D006795 3.8e-57 225.7 241 54.4
FAN14G0578 Fragaria x ananassa HOM05D005382 ORTHO05D006795 6.5e-57 224.9 207 61.4
Sed0008280 Sechium edule HOM05D005382 ORTHO05D006795 6.5e-57 224.9 239 55.6
BraA07t31983Z Brassica rapa HOM05D005382 ORTHO05D006795 1.1e-56 224.2 241 53.5
Duzib235G0288 Durio zibethinus HOM05D005382 ORTHO05D006795 1.1e-56 224.2 147 80.3
PGSC0003DMG400014155 Solanum tuberosum HOM05D005382 ORTHO05D006795 1.1e-56 224.2 137 81.0
PSO782G0145 Papaver somniferum HOM05D005382 ORTHO05D006795 1.4e-56 223.8 241 56.0
SGA_v2.0_scaffold74G24593 Striga asiatica HOM05D005382 ORTHO05D006795 2.5e-56 223.0 234 54.7
Duzib192G0805 Durio zibethinus HOM05D005382 ORTHO05D006795 4.2e-56 222.2 140 80.0
BcaNung04166 Brassica carinata HOM05D005382 ORTHO05D006795 9.4e-56 221.1 248 54.0
AL2G40440 Arabidopsis lyrata HOM05D005382 ORTHO05D006795 2.1e-55 219.9 232 55.2
A07p26960 Brassica napus HOM05D005382 ORTHO05D006795 2.1e-55 219.9 240 52.9
BraA07t30340Z Brassica rapa HOM05D005382 ORTHO05D006795 2.1e-55 219.9 240 52.9
C06p29630 Brassica napus HOM05D005382 ORTHO05D006795 2.7e-55 219.5 241 53.9
BolC6t38128H Brassica oleracea HOM05D005382 ORTHO05D006795 2.7e-55 219.5 233 53.2
Aa31LG4G1250 Aethionema arabicum HOM05D005382 ORTHO05D006795 4.7e-55 218.8 243 52.3
CDE04G1090 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 7.9e-55 218.0 244 52.9
PSO063G0682 Papaver somniferum HOM05D005382 ORTHO05D006795 1.0e-54 217.6 239 54.8
Oeu003125.1 Olea europaea HOM05D005382 ORTHO05D006795 1.4e-54 217.2 179 69.8
Oeu051555.1 Olea europaea HOM05D005382 ORTHO05D006795 1.1e-53 214.2 169 70.4
CARHR073510 Cardamine hirsuta HOM05D005382 ORTHO05D006795 2.0e-53 213.4 207 59.4
AUR62034069 Chenopodium quinoa HOM05D007611 ORTHO05D006795 2.6e-53 213.0 189 61.4
Lalb_Chr01g0011991 Lupinus albus HOM05D005382 ORTHO05D006795 3.3e-53 212.6 224 53.6
Psat7g262200 Pisum sativum HOM05D005382 ORTHO05D006795 1.7e-52 210.3 205 57.6
TPR.G3367 Trifolium pratense HOM05D005382 ORTHO05D006795 2.8e-52 209.5 206 58.3
TWI75G0559 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 4.8e-52 208.8 187 62.0
arahy.Tifrunner.gnm1.ann1.7IZ6IW Arachis hypogaea HOM05D005382 ORTHO05D006795 1.5e-50 203.8 227 54.2
arahy.Tifrunner.gnm1.ann1.HUQR60 Arachis hypogaea HOM05D005382 ORTHO05D006795 2.0e-50 203.4 227 54.6
ATR0580G392 Amborella trichopoda HOM05D005382 ORTHO05D006795 1.0e-49 201.1 220 55.5
CDE07G1687 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 1.7e-49 200.3 141 73.8
Os02g0793900 Oryza sativa ssp. japonica HOM05D005382 ORTHO05D006795 4.2e-48 195.7 227 51.1
HPP92_010348 Vanilla planifolia HOM05D005382 ORTHO05D006795 1.2e-47 194.1 226 51.8
Zm00001eb257680 Zea mays HOM05D005382 ORTHO05D006795 6.1e-47 191.8 227 50.7
CANSAT56G2690 Cannabis sativa HOM05D005382 ORTHO05D006795 1.0e-46 191.0 140 70.7
Cpa.g.c28380.1 Carica papaya HOM05D005382 ORTHO05D006795 1.1e-45 187.6 136 71.3
SMO145G0139 Selaginella moellendorffii HOM05D005382 ORTHO05D006795 5.9e-42 175.3 133 64.7
Mapoly0128s0009 Marchantia polymorpha HOM05D005382 ORTHO05D006795 2.2e-41 173.3 136 66.2
Pp3c16_25700 Physcomitrium patens HOM05D005382 ORTHO05D006795 3.8e-41 172.6 134 66.4
Ah.14g085670 Amaranthus hybridus HOM05D005382 ORTHO05D006795 5.0e-41 172.2 225 49.3
Pp3c25_9780 Physcomitrium patens HOM05D005382 ORTHO05D006795 9.4e-40 167.9 136 64.7
Actinidia36864 Actinidia chinensis HOM05D005382 ORTHO05D006795 1.2e-39 167.5 243 44.9
SEGI_41275 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 1.0e-38 164.5 132 64.4
CSS0015514 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 1.8e-35 153.7 130 76.9
SEGI_02613 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 2.5e-32 143.3 113 62.8
Hund12559 Selenicereus undatus HOM05D005382 ORTHO05D006795 7.2e-32 141.7 171 50.3
BcaB07g33703 Brassica carinata HOM05D005382 ORTHO05D006795 2.6e-29 133.3 174 45.4
Atru.chr1.2804_Atru.chr1.2805 Acer truncatum HOM05D005382 ORTHO05D006795 1.8e-27 127.1 244 41.0
Actinidia26581 Actinidia chinensis HOM05D005382 ORTHO05D054410 1.9e-24 117.1 159 52.8
BcaB07g33704 Brassica carinata HOM05D005382 ORTHO05D006795 1.0e-22 111.3 63 84.1
BcaB07g33705 Brassica carinata HOM05D005382 ORTHO05D006795 1.0e-22 111.3 63 84.1
unitig_22.g6275 Utricularia gibba HOM05D005382 ORTHO05D006795 3.0e-22 109.8 75 76.0
Actinidia26580 Actinidia chinensis HOM05D005382 ORTHO05D006795 1.8e-19 100.5 70 72.9
AagrBONN_evm.TU.Sc2ySwM_117.2014 Anthoceros agrestis HOM05D005382 ORTHO05D006795 9.5e-16 88.2 86 57.0
TPR.G1583 Trifolium pratense HOM05D005382 ORTHO05D006795 1.5e-08 64.3 45 73.3


User provided reference genes

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