Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0181600 Rhododendron simsii HOM05D005248 ORTHO05D006409 1.1e-59 233.0 116 100.0
Cfa018696 Carpinus fangiana HOM05D005248 ORTHO05D006409 2.1e-37 159.1 107 74.8
QL10p000295 Quercus lobata HOM05D005248 ORTHO05D006409 4.7e-37 157.9 111 69.4
Gorai.001G053700 Gossypium raimondii HOM05D005248 ORTHO05D006409 1.0e-36 156.8 110 70.9
Gohir.D07G050600 Gossypium hirsutum HOM05D005248 ORTHO05D006409 1.4e-36 156.4 110 70.0
Gohir.A07G046300 Gossypium hirsutum HOM05D005248 ORTHO05D006409 3.0e-36 155.2 112 67.9
CSS0027803 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 5.1e-36 154.5 107 70.1
CSS0031400 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 5.1e-36 154.5 107 70.1
Ciclev10032866m.g Citrus clementina HOM05D005248 ORTHO05D006409 6.7e-36 154.1 91 79.1
Oeu051184.1 Olea europaea HOM05D005248 ORTHO05D006409 1.5e-35 152.9 110 69.1
GSVIVG01005682001 Vitis vinifera HOM05D005248 ORTHO05D006409 1.5e-35 152.9 109 69.7
Thecc.03G142000 Theobroma cacao HOM05D005248 ORTHO05D006409 2.0e-35 152.5 110 69.1
Dinv13708 Davidia involucrata HOM05D005248 ORTHO05D006409 2.6e-35 152.1 87 82.8
Duzib205G1954 Durio zibethinus HOM05D005248 ORTHO05D006409 3.3e-35 151.8 110 68.2
Oeu017204.1 Olea europaea HOM05D005248 ORTHO05D006409 4.4e-35 151.4 88 78.4
Atru.chr6.1938 Acer truncatum HOM05D005248 ORTHO05D006409 5.7e-35 151.0 107 69.2
Cpa.g.sc13.186 Carica papaya HOM05D005248 ORTHO05D006409 5.7e-35 151.0 109 69.7
COL.COLO4_37271 Corchorus olitorius HOM05D005248 ORTHO05D006409 5.7e-35 151.0 107 71.0
RcHm_v2.0_Chr7g0188501 Rosa chinensis HOM05D005248 ORTHO05D006409 5.7e-35 151.0 91 79.1
Prupe.5G140100 Prunus persica HOM05D005248 ORTHO05D006409 7.4e-35 150.6 89 79.8
MD14G1145800 Malus domestica HOM05D005248 ORTHO05D006409 1.7e-34 149.4 86 81.4
Potri.015G108300 Populus trichocarpa HOM05D005248 ORTHO05D006409 2.2e-34 149.1 106 67.9
Actinidia25510 Actinidia chinensis HOM05D005248 ORTHO05D006409 2.8e-34 148.7 107 69.2
CANSAT78G1265 Cannabis sativa HOM05D005248 ORTHO05D006409 2.8e-34 148.7 105 68.6
TAR371G0926 Trochodendron aralioides HOM05D005248 ORTHO05D006409 2.8e-34 148.7 107 69.2
CAN.G1008.49 Capsicum annuum HOM05D005248 ORTHO05D006409 3.7e-34 148.3 106 68.9
Cc04_g05750 Coffea canephora HOM05D005248 ORTHO05D006409 3.7e-34 148.3 88 76.1
CSS0028005 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 4.8e-34 147.9 110 65.5
Hma1.2p1_0452F.1_g155900 Hydrangea macrophylla HOM05D005248 ORTHO05D006409 4.8e-34 147.9 102 71.6
Nitab4.5_0000976g0180 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.1e-33 146.7 106 68.9
CiPaw.12G000300 Carya illinoinensis HOM05D005248 ORTHO05D006409 1.4e-33 146.4 106 68.9
PGSC0003DMG400014171 Solanum tuberosum HOM05D005248 ORTHO05D006409 1.4e-33 146.4 111 65.8
SGA_v2.0_scaffold44G16640 Striga asiatica HOM05D005248 ORTHO05D006409 1.4e-33 146.4 86 79.1
Phvul.009G158800 Phaseolus vulgaris HOM05D005248 ORTHO05D006409 1.8e-33 146.0 90 75.6
Sopen03g037010 Solanum pennellii HOM05D005248 ORTHO05D006409 1.8e-33 146.0 111 65.8
FvH4_5g09730 Fragaria vesca HOM05D005248 ORTHO05D006409 2.4e-33 145.6 91 75.8
FAN08G1048 Fragaria x ananassa HOM05D005248 ORTHO05D006409 2.4e-33 145.6 91 75.8
Sabra12G0080100 Salix brachista HOM05D005248 ORTHO05D006409 2.4e-33 145.6 106 67.0
CDE06G0011 Ceratophyllum demersum HOM05D005248 ORTHO05D006409 3.1e-33 145.2 90 75.6
Migut.I00662 Erythranthe guttata HOM05D005248 ORTHO05D006409 3.1e-33 145.2 88 76.1
FAN13G2612 Fragaria x ananassa HOM05D005248 ORTHO05D006409 3.1e-33 145.2 91 75.8
PGR119G0545 Punica granatum HOM05D005248 ORTHO05D006409 3.1e-33 145.2 105 69.5
Rhsim08G0198900 Rhododendron simsii HOM05D005248 ORTHO05D006409 3.1e-33 145.2 107 68.2
SalBow1G4990 Salvia bowleyana HOM05D005248 ORTHO05D006409 3.1e-33 145.2 86 77.9
VMungo0251G2692 Vigna mungo HOM05D005248 ORTHO05D006409 3.1e-33 145.2 87 78.2
FAN04G2277 Fragaria x ananassa HOM05D005248 ORTHO05D006409 4.1e-33 144.8 91 75.8
MD06G1128800 Malus domestica HOM05D005248 ORTHO05D006409 4.1e-33 144.8 84 81.0
vmacro16762 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 4.1e-33 144.8 114 65.8
FAN18G0065 Fragaria x ananassa HOM05D005248 ORTHO05D006409 5.3e-33 144.4 91 75.8
Sc14g0003150 Simmondsia chinensis HOM05D005248 ORTHO05D006409 5.3e-33 144.4 87 77.0
CsaV3_2G009360 Cucumis sativus L. HOM05D005248 ORTHO05D006409 7.0e-33 144.1 91 71.4
AT5G51040 Arabidopsis thaliana HOM05D005248 ORTHO05D006409 9.1e-33 143.7 91 71.4
MSTRG.22815 Avicennia marina HOM05D005248 ORTHO05D006409 9.1e-33 143.7 85 78.8
MELO3C008773.2 Cucumis melo HOM05D005248 ORTHO05D006409 9.1e-33 143.7 91 71.4
Lj5A86T66 Lonicera japonica HOM05D005248 ORTHO05D006409 9.1e-33 143.7 85 72.9
Nitab4.5_0010893g0020 Nicotiana tabacum HOM05D005248 ORTHO05D006409 9.1e-33 143.7 108 64.8
arahy.Tifrunner.gnm1.ann1.1UQX8S Arachis hypogaea HOM05D005248 ORTHO05D006409 1.2e-32 143.3 108 66.7
Nn3g16250 Nelumbo nucifera HOM05D005248 ORTHO05D006409 1.2e-32 143.3 111 64.0
THA.LOC104825042 Tarenaya hassleriana HOM05D005248 ORTHO05D006409 1.2e-32 143.3 91 73.6
arahy.Tifrunner.gnm1.ann1.4X1L65 Arachis hypogaea HOM05D005248 ORTHO05D006409 1.5e-32 142.9 108 65.7
Glyma.04G202600 Glycine max HOM05D005248 ORTHO05D006409 1.5e-32 142.9 110 65.5
ECA247G0315 Erigeron canadensis HOM05D005248 ORTHO05D000263 2.0e-32 142.5 103 68.0
Glyma.06G162900 Glycine max HOM05D005248 ORTHO05D006409 2.0e-32 142.5 86 79.1
Psat7g039840 Pisum sativum HOM05D005248 ORTHO05D006409 2.0e-32 142.5 93 73.1
Sed0027310 Sechium edule HOM05D005248 ORTHO05D006409 2.0e-32 142.5 84 78.6
Atru.chr10.902 Acer truncatum HOM05D005248 ORTHO05D006409 2.6e-32 142.1 125 60.0
Lsat_1_v5_gn_1_30140 Lactuca sativa HOM05D005248 ORTHO05D006409 2.6e-32 142.1 110 65.5
Ca_16820_v3 Cicer arietinum L. HOM05D000402 ORTHO05D000263 3.5e-32 141.7 90 74.4
Lj1g0011989 Lotus japonicus HOM05D005248 ORTHO05D006409 3.5e-32 141.7 91 74.7
Nitab4.5_0012624g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 3.5e-32 141.7 85 77.6
SGA_v2.0_scaffold37G14670 Striga asiatica HOM05D005248 ORTHO05D006409 3.5e-32 141.7 86 76.7
AL8G25260 Arabidopsis lyrata HOM05D005248 ORTHO05D006409 5.9e-32 141.0 91 70.3
Medtr8g096070 Medicago truncatula HOM05D005248 ORTHO05D006409 5.9e-32 141.0 86 76.7
TWI39G0330 Tripterygium wilfordii HOM05D005248 ORTHO05D006409 7.7e-32 140.6 86 75.6
Lalb_Chr12g0202581 Lupinus albus HOM05D005248 ORTHO05D006409 1.0e-31 140.2 87 75.9
Medtr3g098480 Medicago truncatula HOM05D005248 ORTHO05D006409 1.0e-31 140.2 83 77.1
CARHR257090 Cardamine hirsuta HOM05D005248 ORTHO05D006409 1.3e-31 139.8 91 70.3
HanXRQChr02g0034361 Helianthus annuus HOM05D005248 ORTHO05D006409 1.3e-31 139.8 89 74.2
arahy.Tifrunner.gnm1.ann1.JK6BKQ Arachis hypogaea HOM05D005248 ORTHO05D006409 1.7e-31 139.4 106 65.1
PSO782G4423 Papaver somniferum HOM05D005248 ORTHO05D006409 2.2e-31 139.0 102 69.6
Carub.0008s1104 Capsella rubella HOM05D005248 ORTHO05D006409 2.9e-31 138.7 87 72.4
arahy.Tifrunner.gnm1.ann1.X29WZH Arachis hypogaea HOM05D005248 ORTHO05D006409 3.8e-31 138.3 86 74.4
ClCG11G000550 Citrullus lanatus HOM05D005248 ORTHO05D006409 3.8e-31 138.3 91 70.3
DCAR_025638 Daucus carota HOM05D005248 ORTHO05D006409 3.8e-31 138.3 91 71.4
PSO063G1686 Papaver somniferum HOM05D005248 ORTHO05D006409 6.5e-31 137.5 102 68.6
Aqoxy4G00470 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 1.5e-30 136.3 90 71.1
Aqoxy5G00839 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 1.9e-30 136.0 90 71.1
EL10Ac5g11271 Beta vulgaris HOM05D005248 ORTHO05D006409 1.9e-30 136.0 111 59.5
Manes.14G043700 Manihot esculenta HOM05D005248 ORTHO05D006409 1.9e-30 136.0 105 64.8
Hund02516 Selenicereus undatus HOM05D005248 ORTHO05D006409 1.9e-30 136.0 111 61.3
AUR62043379 Chenopodium quinoa HOM05D005248 ORTHO05D006409 2.5e-30 135.6 106 62.3
Hund10025 Selenicereus undatus HOM05D005248 ORTHO05D006409 2.5e-30 135.6 106 62.3
unitig_61.g26221 Utricularia gibba HOM05D005248 ORTHO05D006409 2.5e-30 135.6 85 72.9
Sp6g13210 Schrenkiella parvula HOM05D005248 ORTHO05D006409 4.2e-30 134.8 90 70.0
AUR62043864 Chenopodium quinoa HOM05D005248 ORTHO05D006409 5.5e-30 134.4 106 61.3
Haze_07087 Corylus avellana HOM05D005248 ORTHO05D006409 5.5e-30 134.4 148 52.0
Glyma.08G007100 Glycine max HOM05D005248 ORTHO05D006409 7.2e-30 134.0 83 73.5
AUR62032207 Chenopodium quinoa HOM05D005248 ORTHO05D006409 9.4e-30 133.7 106 61.3
Peaxi162Scf00314g00750 Petunia axillaris HOM05D005248 ORTHO05D006409 1.2e-29 133.3 99 65.7
BraSC35t45996Z Brassica rapa HOM05D005248 ORTHO05D006409 1.6e-29 132.9 90 67.8
Os11g0528300 Oryza sativa ssp. japonica HOM05D005248 ORTHO05D006409 1.6e-29 132.9 82 73.2
BcaB05g24022 Brassica carinata HOM05D005248 ORTHO05D006409 2.1e-29 132.5 90 68.9
Aa31LG3G7530 Aethionema arabicum HOM05D005248 ORTHO05D006409 2.7e-29 132.1 88 71.6
A10p08030 Brassica napus HOM05D005248 ORTHO05D006409 2.7e-29 132.1 90 67.8
BcaC03g14629 Brassica carinata HOM05D005248 ORTHO05D006409 3.6e-29 131.7 90 66.7
Thhalv10014773m.g Eutrema salsugineum HOM05D005248 ORTHO05D006409 3.6e-29 131.7 90 67.8
Ah.11g047000 Amaranthus hybridus HOM05D005248 ORTHO05D006409 4.7e-29 131.3 104 59.6
A02p12520 Brassica napus HOM05D005248 ORTHO05D006409 8.0e-29 130.6 86 69.8
vmacro19110 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 8.0e-29 130.6 138 52.2
HPP92_006440 Vanilla planifolia HOM05D005248 ORTHO05D006409 8.0e-29 130.6 91 70.3
BolC9t56844H Brassica oleracea HOM05D005248 ORTHO05D006409 1.0e-28 130.2 91 69.2
Zm00001eb198100 Zea mays HOM05D005248 ORTHO05D006409 1.8e-28 129.4 83 68.7
ATR0582G036 Amborella trichopoda HOM05D005248 ORTHO05D006409 5.2e-28 127.9 83 72.3
BraA02t06314Z Brassica rapa HOM05D005248 ORTHO05D006409 6.7e-28 127.5 93 66.7
Eucgr.H01475 Eucalyptus grandis HOM05D005248 ORTHO05D006409 1.5e-27 126.3 106 59.4
PSO675G1946 Papaver somniferum HOM05D005248 ORTHO05D006409 1.5e-27 126.3 78 76.9
vmacro19116 Vaccinium macrocarpon HOM05D000402 ORTHO05D000263 9.7e-27 123.6 156 46.2
Nitab4.5_0002540g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 8.2e-26 120.6 78 75.6
Lj9C488G13 Lonicera japonica HOM05D005248 ORTHO05D006409 1.1e-25 120.2 70 74.3
BolC2t08204H Brassica oleracea HOM05D005248 ORTHO05D006409 1.4e-25 119.8 99 60.6
Sabra15G0130900 Salix brachista HOM05D001551 ORTHO05D000263 1.4e-25 119.8 170 42.4
C09p39650 Brassica napus HOM05D005248 ORTHO05D006409 1.8e-25 119.4 90 64.4
Sabra15G0128600 Salix brachista HOM05D005248 ORTHO05D006409 3.8e-23 111.7 193 37.3
C02p20620 Brassica napus HOM05D005248 ORTHO05D006409 4.2e-22 108.2 70 68.6
PSO541G2841 Papaver somniferum HOM05D005248 ORTHO05D006409 7.2e-22 107.5 82 67.1
Lsat_1_v5_gn_9_37901 Lactuca sativa HOM05D005248 ORTHO05D006409 1.2e-21 106.7 94 57.4
SMO146G0118 Selaginella moellendorffii HOM05D005248 ORTHO05D006409 8.0e-21 104.0 76 60.5
TPR.G20580 Trifolium pratense HOM05D005248 ORTHO05D006409 1.0e-20 103.6 64 81.2
Mapoly0022s0036 Marchantia polymorpha HOM05D005248 ORTHO05D006409 1.2e-19 100.1 78 56.4
Pp3c16_25170 Physcomitrium patens HOM05D005248 ORTHO05D006409 1.3e-18 96.7 98 45.9
CAN.G412.4 Capsicum annuum HOM05D005248 ORTHO05D006409 2.2e-18 95.9 60 71.7
Cre12.g550750 Chlamydomonas reinhardtii HOM05D005248 ORTHO05D006409 1.7e-15 86.3 105 45.7
Lj4g0025558 Lotus japonicus HOM05D005248 ORTHO05D006409 7.2e-14 80.9 85 56.5
PRCOL_00003706 Prasinoderma coloniale HOM05D005248 ORTHO05D006409 3.6e-13 78.6 77 44.2
MCO01G238 Micromonas commoda HOM05D005248 ORTHO05D006409 2.0e-11 72.8 66 47.0
Gorai.007G045300 Gossypium raimondii HOM05D005248 ORTHO05D006409 2.6e-11 72.4 43 81.4
Gohir.A07G044532 Gossypium hirsutum HOM05D005248 ORTHO05D006409 7.5e-11 70.9 61 55.7
Gohir.A11G038833 Gossypium hirsutum HOM05D005248 ORTHO05D006409 3.1e-09 65.5 41 68.3
AagrBONN_evm.TU.Sc2ySwM_368.2623 Anthoceros agrestis HOM05D005248 ORTHO05D006409 2.7e-08 62.4 59 47.5
Zm00001eb113310 Zea mays HOM05D005248 ORTHO05D006409 8.6e-07 57.4 41 58.5


User provided reference genes

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