Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0181300 Rhododendron simsii HOM05D001551 ORTHO05D005859 5.0e-159 564.3 269 100.0
vmacro16761 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 4.3e-142 508.1 275 88.7
CSS0038575 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 8.6e-135 483.8 269 84.0
Solyc06g068760.3 Solanum lycopersicum HOM05D001551 ORTHO05D005859 1.1e-134 483.4 269 82.5
CSS0002484 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 2.5e-134 482.3 269 83.6
Actinidia08913 Actinidia chinensis HOM05D001551 ORTHO05D005859 1.6e-133 479.6 268 83.6
Sopen06g026040 Solanum pennellii HOM05D001551 ORTHO05D005859 2.8e-133 478.8 270 82.2
Nitab4.5_0007345g0100 Nicotiana tabacum HOM05D001551 ORTHO05D005859 8.0e-133 477.2 268 84.3
Thecc.03G141800 Theobroma cacao HOM05D001551 ORTHO05D005859 8.0e-133 477.2 268 83.2
PGSC0003DMG400025575 Solanum tuberosum HOM05D001551 ORTHO05D005859 1.0e-132 476.9 270 82.2
Nitab4.5_0012775g0030 Nicotiana tabacum HOM05D001551 ORTHO05D005859 3.1e-132 475.3 268 84.0
Cc04_g05770 Coffea canephora HOM05D001551 ORTHO05D005859 6.8e-132 474.2 266 81.6
CAN.G1089.16 Capsicum annuum HOM05D001551 ORTHO05D005859 8.9e-132 473.8 268 82.8
MSTRG.22814 Avicennia marina HOM05D001551 ORTHO05D005859 5.8e-131 471.1 265 81.5
Hma1.2p1_0577F.1_g182180 Hydrangea macrophylla HOM05D001551 ORTHO05D005859 9.8e-131 470.3 257 84.8
COL.COLO4_37269 Corchorus olitorius HOM05D001551 ORTHO05D005859 2.2e-130 469.2 269 81.4
SalBow7G1162 Salvia bowleyana HOM05D001551 ORTHO05D005859 2.9e-130 468.8 268 80.6
TAR629G2635 Trochodendron aralioides HOM05D001551 ORTHO05D005859 3.7e-130 468.4 269 81.8
Actinidia36846 Actinidia chinensis HOM05D001551 ORTHO05D005859 4.9e-130 468.0 269 81.8
Duzib205G1491 Durio zibethinus HOM05D001551 ORTHO05D005859 1.1e-129 466.8 268 81.3
Lj9C488G12 Lonicera japonica HOM05D001551 ORTHO05D005859 1.4e-129 466.5 261 82.4
Potri.012G109800 Populus trichocarpa HOM05D001551 ORTHO05D005859 3.2e-129 465.3 266 80.5
Lsat_1_v5_gn_5_9381 Lactuca sativa HOM05D001551 ORTHO05D005859 1.6e-128 463.0 266 81.2
Sabra12G0080000 Salix brachista HOM05D001551 ORTHO05D005859 2.0e-128 462.6 268 79.9
Cpa.g.sc2215.3 Carica papaya HOM05D001551 ORTHO05D005859 4.6e-128 461.5 269 81.0
Glyma.06G163100 Glycine max HOM05D001551 ORTHO05D005859 6.0e-128 461.1 268 79.5
Migut.I00664 Erythranthe guttata HOM05D001551 ORTHO05D005859 3.0e-127 458.8 259 81.5
Gohir.A11G038800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 3.9e-127 458.4 269 80.7
HanXRQChr05g0155371 Helianthus annuus HOM05D001551 ORTHO05D005859 8.6e-127 457.2 264 80.3
Glyma.04G202400 Glycine max HOM05D001551 ORTHO05D005859 1.1e-126 456.8 269 79.6
Gohir.A03G055800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.5e-126 456.4 258 82.9
Manes.14G043800 Manihot esculenta HOM05D001551 ORTHO05D005859 1.9e-126 456.1 269 79.9
Gohir.D11G042000 Gossypium hirsutum HOM05D001551 ORTHO05D005859 3.3e-126 455.3 269 79.6
GSVIVG01008663001 Vitis vinifera HOM05D001551 ORTHO05D005859 4.3e-126 454.9 269 78.8
Gorai.007G045200 Gossypium raimondii HOM05D001551 ORTHO05D005859 5.6e-126 454.5 270 79.6
Phvul.009G160500 Phaseolus vulgaris HOM05D001551 ORTHO05D005859 9.5e-126 453.8 269 78.1
TWI23G1313 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 1.6e-125 453.0 269 79.2
Aqoxy5G03068 Aquilegia oxysepala HOM05D001551 ORTHO05D005859 2.1e-125 452.6 269 77.3
Gorai.003G117100 Gossypium raimondii HOM05D001551 ORTHO05D005859 2.8e-125 452.2 268 79.9
arahy.Tifrunner.gnm1.ann1.D8JD58 Arachis hypogaea HOM05D001551 ORTHO05D005859 1.4e-124 449.9 269 76.6
arahy.Tifrunner.gnm1.ann1.Q2CTBB Arachis hypogaea HOM05D001551 ORTHO05D005859 1.4e-124 449.9 269 76.6
Lj1g0018460 Lotus japonicus HOM05D001551 ORTHO05D005859 1.4e-124 449.9 265 77.4
TAR371G0091 Trochodendron aralioides HOM05D001551 ORTHO05D005859 1.4e-124 449.9 269 80.3
Rhsim08G0198700 Rhododendron simsii HOM05D001551 ORTHO05D005859 4.0e-124 448.4 251 82.5
Atru.chr6.1937 Acer truncatum HOM05D001551 ORTHO05D005859 5.2e-124 448.0 269 78.8
QL10p000300 Quercus lobata HOM05D001551 ORTHO05D005859 5.2e-124 448.0 254 80.7
RcHm_v2.0_Chr7g0188531 Rosa chinensis HOM05D001551 ORTHO05D005859 5.2e-124 448.0 268 78.4
Ca_10874_v3 Cicer arietinum L. HOM05D001551 ORTHO05D005859 1.5e-123 446.4 269 77.0
Medtr3g098510 Medicago truncatula HOM05D001551 ORTHO05D005859 1.5e-123 446.4 269 75.8
Cfa018920 Carpinus fangiana HOM05D001551 ORTHO05D005859 3.4e-123 445.3 255 80.0
Prupe.5G140300 Prunus persica HOM05D001551 ORTHO05D005859 3.4e-123 445.3 268 78.0
MD06G1129000 Malus domestica HOM05D001551 ORTHO05D005859 4.4e-123 444.9 268 78.0
PSO017G1738 Papaver somniferum HOM05D001551 ORTHO05D005859 5.8e-123 444.5 269 77.7
MD14G1145900 Malus domestica HOM05D001551 ORTHO05D005859 7.5e-123 444.1 265 77.7
Ciclev10032408m.g Citrus clementina HOM05D001551 ORTHO05D005859 1.7e-122 443.0 272 77.9
PSO478G5149 Papaver somniferum HOM05D001551 ORTHO05D005859 2.9e-122 442.2 269 77.3
Cfa018698 Carpinus fangiana HOM05D001551 ORTHO05D005859 2.4e-121 439.1 255 80.0
Lalb_Chr08g0237601 Lupinus albus HOM05D001551 ORTHO05D005859 4.1e-121 438.3 269 75.1
MELO3C002387.2 Cucumis melo HOM05D001551 ORTHO05D005859 5.4e-121 438.0 267 74.2
Manes.06G127400 Manihot esculenta HOM05D001551 ORTHO05D005859 9.2e-121 437.2 259 80.3
CsaV3_1G009930 Cucumis sativus L. HOM05D001551 ORTHO05D005859 2.1e-120 436.0 267 73.8
A01p16340 Brassica napus HOM05D001551 ORTHO05D005859 2.7e-120 435.6 270 75.6
BraA01t01589Z Brassica rapa HOM05D001551 ORTHO05D005859 3.5e-120 435.3 270 75.6
FAN04G0171 Fragaria x ananassa HOM05D001551 ORTHO05D005859 3.5e-120 435.3 257 79.8
FAN13G0525 Fragaria x ananassa HOM05D001551 ORTHO05D005859 3.5e-120 435.3 258 79.1
FvH4_5g09710 Fragaria vesca HOM05D001551 ORTHO05D005859 4.6e-120 434.9 257 79.8
FAN08G3006 Fragaria x ananassa HOM05D001551 ORTHO05D005859 6.0e-120 434.5 258 79.1
C01p20490 Brassica napus HOM05D001551 ORTHO05D005859 1.0e-119 433.7 270 75.2
FAN18G2118 Fragaria x ananassa HOM05D001551 ORTHO05D005859 1.0e-119 433.7 257 79.8
vmacro19115 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 1.0e-119 433.7 240 81.2
BcaC09g50811 Brassica carinata HOM05D001551 ORTHO05D005859 1.7e-119 433.0 269 74.7
BcaNung03998 Brassica carinata HOM05D001551 ORTHO05D005859 1.7e-119 433.0 270 75.2
CiPaw.12G000400 Carya illinoinensis HOM05D001551 ORTHO05D005859 2.5e-118 429.1 254 78.7
BolC1t01980H Brassica oleracea HOM05D001551 ORTHO05D005859 3.3e-118 428.7 270 74.4
Psat5g055440 Pisum sativum HOM05D001551 ORTHO05D005859 4.3e-118 428.3 269 73.2
Peaxi162Scf00207g00254 Petunia axillaris HOM05D001551 ORTHO05D005859 7.3e-118 427.6 271 78.2
EL10Ac5g11272 Beta vulgaris HOM05D001551 ORTHO05D005859 2.1e-117 426.0 267 74.5
SGA_v2.0_scaffold5G02806 Striga asiatica HOM05D001551 ORTHO05D005859 3.6e-117 425.2 271 74.2
PGR044G0460 Punica granatum HOM05D001551 ORTHO05D005859 4.7e-117 424.9 260 75.8
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 6.2e-117 424.5 248 79.0
Oeu051186.2 Olea europaea HOM05D001551 ORTHO05D005859 1.4e-116 423.3 283 70.7
Sed0027340 Sechium edule HOM05D001551 ORTHO05D005859 1.8e-116 422.9 276 72.5
unitig_27.g25103 Utricularia gibba HOM05D001551 ORTHO05D005859 2.3e-116 422.5 263 74.1
Gohir.D03G110700 Gossypium hirsutum HOM05D001551 ORTHO05D005859 3.1e-116 422.2 239 81.6
DCAR_025640 Daucus carota HOM05D001551 ORTHO05D005859 4.0e-116 421.8 259 76.8
THA.LOC104808046 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 4.0e-116 421.8 257 76.7
Aa31LG3G7480 Aethionema arabicum HOM05D001551 ORTHO05D005859 3.4e-115 418.7 268 72.8
Sc04g0000180 Simmondsia chinensis HOM05D001551 ORTHO05D005859 3.8e-114 415.2 278 70.9
AUR62043378 Chenopodium quinoa HOM05D001551 ORTHO05D005859 4.9e-114 414.8 287 68.6
AT5G51020 Arabidopsis thaliana HOM05D001551 ORTHO05D005859 6.4e-114 414.5 271 72.3
CARHR257170 Cardamine hirsuta HOM05D001551 ORTHO05D005859 1.1e-113 413.7 271 72.3
Sed0019000 Sechium edule HOM05D001551 ORTHO05D005859 1.1e-113 413.7 270 72.2
CDE02G1325 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 1.4e-113 413.3 258 74.0
AL8G25230 Arabidopsis lyrata HOM05D001551 ORTHO05D005859 1.9e-113 412.9 271 72.0
AUR62032208 Chenopodium quinoa HOM05D001551 ORTHO05D005859 2.4e-113 412.5 285 69.1
Carub.0008s1102 Capsella rubella HOM05D001551 ORTHO05D005859 3.2e-113 412.1 272 71.3
Sp7g23070 Schrenkiella parvula HOM05D001551 ORTHO05D005859 4.1e-113 411.8 270 73.0
Eucgr.K02189 Eucalyptus grandis HOM05D001551 ORTHO05D005859 9.2e-113 410.6 264 72.0
Sp6g13170 Schrenkiella parvula HOM05D001551 ORTHO05D005859 9.2e-113 410.6 268 70.9
Hund10026 Selenicereus undatus HOM05D001551 ORTHO05D005859 7.8e-112 407.5 253 74.3
Actinidia18288 Actinidia chinensis HOM05D001551 ORTHO05D005859 1.7e-111 406.4 238 81.5
BraA03t10931Z Brassica rapa HOM05D001551 ORTHO05D005859 1.5e-110 403.3 267 69.7
TWI39G0428 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 1.5e-110 403.3 267 73.0
Dinv13710 Davidia involucrata HOM05D001551 ORTHO05D005859 1.6e-109 399.8 211 86.3
SGA_v2.0_scaffold37G14673 Striga asiatica HOM05D001551 ORTHO05D005859 5.2e-108 394.8 218 81.2
THA.LOC104811554 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 5.2e-108 394.8 242 74.4
A03p16410 Brassica napus HOM05D001551 ORTHO05D005859 8.4e-106 387.5 292 63.7
Os11g0524300 Oryza sativa ssp. japonica HOM05D001551 ORTHO05D005859 1.2e-104 383.6 232 72.4
MBI07_g13940_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 2.7e-104 382.5 294 66.0
BcaC01g06112 Brassica carinata HOM05D001551 ORTHO05D005859 3.9e-103 378.6 271 67.2
Zm00001eb170550 Zea mays HOM05D001551 ORTHO05D005859 4.3e-102 375.2 233 71.2
ClCG03G004050 Citrullus lanatus HOM05D001551 ORTHO05D005859 7.3e-102 374.4 224 74.6
Actinidia25511 Actinidia chinensis HOM05D001551 ORTHO05D005859 9.0e-100 367.5 221 78.3
AagrBONN_evm.TU.Sc2ySwM_368.1985 Anthoceros agrestis HOM05D001551 ORTHO05D005859 4.5e-99 365.2 227 70.0
Thhalv10014437m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 1.9e-97 359.8 222 73.9
Mapoly0002s0145 Marchantia polymorpha HOM05D001551 ORTHO05D005859 4.2e-97 358.6 228 70.2
Pp3c5_10130 Physcomitrium patens HOM05D001551 ORTHO05D005859 6.0e-96 354.8 224 68.8
Pp3c6_23000 Physcomitrium patens HOM05D001551 ORTHO05D005859 7.9e-96 354.4 218 71.1
Nn4g22121 Nelumbo nucifera HOM05D001551 ORTHO05D005859 1.0e-95 354.0 269 65.1
SMO118G0459 Selaginella moellendorffii HOM05D001551 ORTHO05D005859 7.4e-94 347.8 222 67.6
AUR62011939 Chenopodium quinoa HOM05D001551 ORTHO05D005859 6.9e-92 341.3 288 59.4
TPR.G16934 Trifolium pratense HOM05D001551 ORTHO05D005859 4.9e-90 335.1 193 77.7
AUR62043863 Chenopodium quinoa HOM05D001551 ORTHO05D005859 6.7e-87 324.7 334 52.1
Haze_07088 Corylus avellana HOM05D001551 ORTHO05D005859 7.4e-86 321.2 233 65.7
Dinv23235 Davidia involucrata HOM05D001551 ORTHO05D005859 1.2e-83 313.9 181 82.9
Nn3g16260 Nelumbo nucifera HOM05D001551 ORTHO05D005859 4.5e-83 312.0 164 82.9
Hund02515 Selenicereus undatus HOM05D001551 ORTHO05D005859 5.8e-83 311.6 277 58.1
CBR_g30803 Chara braunii HOM05D001551 ORTHO05D005859 9.3e-81 304.3 215 59.5
SEGI_34423 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 4.8e-77 292.0 199 64.8
Duzib084G0881 Durio zibethinus HOM05D001551 ORTHO05D005859 2.2e-74 283.1 163 80.4
Thhalv10025970m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 3.4e-67 259.2 154 78.6
MBI07_g35983_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 5.0e-66 255.4 163 73.6
MBI07_g48061_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 5.1e-63 245.4 138 79.7
HPP92_009738 Vanilla planifolia HOM05D001551 ORTHO05D005859 3.7e-61 239.2 199 60.3
CDE06G0746 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 1.3e-58 230.7 211 57.8
Sc04g0000130 Simmondsia chinensis HOM05D001551 ORTHO05D005859 1.2e-48 197.6 121 75.2
Sc04g0000140 Simmondsia chinensis HOM05D001551 ORTHO05D005859 3.6e-48 196.1 122 72.1
CSS0038626 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 5.9e-35 152.1 106 70.8
CSS0016811 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 1.4e-31 141.0 86 79.1
SEGI_13041 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 1.1e-25 121.3 66 74.2
FvH4_6g04500 Fragaria vesca HOM05D001551 ORTHO05D005859 7.3e-25 118.6 71 78.9
Psat3g122800 Pisum sativum HOM05D001551 ORTHO05D005859 3.6e-24 116.3 80 67.5
ECA246G1749 Erigeron canadensis HOM05D001551 ORTHO05D005859 6.8e-23 112.1 64 81.2
Pp3c16_270 Physcomitrium patens HOM05D001551 ORTHO05D005859 5.7e-22 109.0 65 70.8
HanXRQChr05g0130591 Helianthus annuus HOM05D001551 ORTHO05D005859 7.5e-22 108.6 53 88.7
Psat7g261640 Pisum sativum HOM05D001551 ORTHO05D005859 3.5e-19 99.8 100 56.0
Cfa013473 Carpinus fangiana HOM05D001551 ORTHO05D005859 5.9e-19 99.0 61 80.3
Sabra15G0128500 Salix brachista HOM05D001551 ORTHO05D003058 4.4e-14 82.8 85 45.9
BcaC01g06064 Brassica carinata HOM05D001551 ORTHO05D005859 9.8e-14 81.6 86 53.5
Duzib084G0670 Durio zibethinus HOM05D001551 ORTHO05D005859 2.2e-13 80.5 56 73.2
C03p19300 Brassica napus HOM05D001551 ORTHO05D042173 1.6e-11 74.3 43 67.4
Psat5g306440 Pisum sativum HOM05D001551 ORTHO05D006558 3.0e-10 70.1 52 65.4
Ah.11g046990 Amaranthus hybridus HOM05D001551 ORTHO05D005859 5.0e-10 69.3 48 64.6
Ah.02g114530 Amaranthus hybridus HOM05D001551 ORTHO05D005859 6.6e-10 68.9 51 66.7
SEGI_34327 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 7.3e-09 65.5 66 51.5


User provided reference genes

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