Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0178200 Rhododendron simsii HOM05D005222 ORTHO05D006230 1.7e-38 162.2 82 100.0
Rhsim08G0194200 Rhododendron simsii HOM05D005222 ORTHO05D006230 5.4e-32 140.6 80 83.8
Actinidia25544 Actinidia chinensis HOM05D005222 ORTHO05D006230 1.2e-31 139.4 80 83.8
Dinv11207 Davidia involucrata HOM05D005222 ORTHO05D006230 1.7e-30 135.6 78 84.6
Nn3g16353 Nelumbo nucifera HOM05D005222 ORTHO05D006230 1.7e-30 135.6 78 83.3
Dinv23190 Davidia involucrata HOM05D005222 ORTHO05D006230 2.5e-29 131.7 78 82.1
Potri.015G102000 Populus trichocarpa HOM05D005222 ORTHO05D006230 3.3e-29 131.3 78 79.5
Sabra15G0122200 Salix brachista HOM05D005222 ORTHO05D006230 3.3e-29 131.3 78 79.5
Potri.012G103400 Populus trichocarpa HOM05D005222 ORTHO05D006230 7.3e-29 130.2 78 79.5
TWI39G0019 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 7.3e-29 130.2 77 80.5
DCAR_016362 Daucus carota HOM05D005222 ORTHO05D006230 1.6e-28 129.0 77 76.6
Manes.06G123800 Manihot esculenta HOM05D005222 ORTHO05D006230 3.6e-28 127.9 78 78.2
Sc04g0000390 Simmondsia chinensis HOM05D005222 ORTHO05D006230 3.6e-28 127.9 77 79.2
GSVIVG01008600001 Vitis vinifera HOM05D005222 ORTHO05D006230 3.6e-28 127.9 74 82.4
HanXRQChr09g0273701 Helianthus annuus HOM05D005222 ORTHO05D006230 4.8e-28 127.5 77 77.9
PGR083G1056 Punica granatum HOM05D005222 ORTHO05D006230 8.1e-28 126.7 77 79.2
TWI23G0048 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 8.1e-28 126.7 77 76.6
Hma1.2p1_0168F.1_g074260 Hydrangea macrophylla HOM05D005222 ORTHO05D006230 1.1e-27 126.3 77 77.9
MD06G1135800 Malus domestica HOM05D005222 ORTHO05D006230 1.4e-27 125.9 77 77.9
Manes.14G047400 Manihot esculenta HOM05D005222 ORTHO05D006230 1.4e-27 125.9 78 75.6
TAR374G1676 Trochodendron aralioides HOM05D005222 ORTHO05D006230 1.4e-27 125.9 78 76.9
Eucgr.B00077 Eucalyptus grandis HOM05D005222 ORTHO05D006230 1.8e-27 125.6 77 77.9
Gohir.A12G192500 Gossypium hirsutum HOM05D005222 ORTHO05D006230 1.8e-27 125.6 77 77.9
Sc22g0003810 Simmondsia chinensis HOM05D005222 ORTHO05D006230 1.8e-27 125.6 77 77.9
Thecc.03G136000 Theobroma cacao HOM05D005222 ORTHO05D006230 3.1e-27 124.8 77 80.5
unitig_0.g1255 Utricularia gibba HOM05D005222 ORTHO05D006230 3.1e-27 124.8 75 74.7
Ciclev10033230m.g Citrus clementina HOM05D005222 ORTHO05D006230 4.0e-27 124.4 77 76.6
MD14G1151000 Malus domestica HOM05D005222 ORTHO05D006230 4.0e-27 124.4 77 76.6
Cfa018742 Carpinus fangiana HOM05D005222 ORTHO05D006230 5.3e-27 124.0 77 76.6
Gohir.D12G194600 Gossypium hirsutum HOM05D005222 ORTHO05D006230 5.3e-27 124.0 77 76.6
CAN.G758.13 Capsicum annuum HOM05D005222 ORTHO05D006230 6.9e-27 123.6 78 75.6
ClCG06G018150 Citrullus lanatus HOM05D005222 ORTHO05D006230 6.9e-27 123.6 81 72.8
CANSAT80G0210 Cannabis sativa HOM05D005222 ORTHO05D006230 9.0e-27 123.2 77 75.3
CAN.G65.111 Capsicum annuum HOM05D005222 ORTHO05D006230 9.0e-27 123.2 77 74.0
Prupe.5G146200 Prunus persica HOM05D005222 ORTHO05D006230 9.0e-27 123.2 77 75.3
Atru.chr6.1879 Acer truncatum HOM05D005222 ORTHO05D006230 1.2e-26 122.9 76 77.6
Nitab4.5_0001464g0100 Nicotiana tabacum HOM05D005222 ORTHO05D006230 1.2e-26 122.9 78 73.1
CiPaw.11G003300 Carya illinoinensis HOM05D005222 ORTHO05D006230 1.5e-26 122.5 77 76.6
CDE06G2816 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 1.5e-26 122.5 77 74.0
Peaxi162Scf01064g00238 Petunia axillaris HOM05D005222 ORTHO05D006230 1.5e-26 122.5 77 74.0
MBI07_g24748_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 2.0e-26 122.1 78 73.1
Migut.D01295 Erythranthe guttata HOM05D005222 ORTHO05D006230 2.6e-26 121.7 75 74.7
Lsat_1_v5_gn_4_83361 Lactuca sativa HOM05D005222 ORTHO05D006230 2.6e-26 121.7 78 71.8
CsaV3_1G000290 Cucumis sativus L. HOM05D005222 ORTHO05D006230 3.4e-26 121.3 76 77.6
EL10Ac5g11344 Beta vulgaris HOM05D005222 ORTHO05D006230 4.5e-26 120.9 77 74.0
CDE02G1328 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 5.8e-26 120.6 77 72.7
Haze_07194 Corylus avellana HOM05D005222 ORTHO05D006230 5.8e-26 120.6 77 75.3
vmacro16739 Vaccinium macrocarpon HOM05D005222 ORTHO05D006230 5.8e-26 120.6 66 89.4
GSVIVG01033034001 Vitis vinifera HOM05D005222 ORTHO05D006230 5.8e-26 120.6 77 75.3
Duzib205G1725 Durio zibethinus HOM05D005222 ORTHO05D006230 7.6e-26 120.2 77 74.0
Aa31LG3G7230 Aethionema arabicum HOM05D005222 ORTHO05D006230 9.9e-26 119.8 77 74.0
SalBow5G1462 Salvia bowleyana HOM05D005222 ORTHO05D006230 9.9e-26 119.8 75 70.7
Cc04_g09830 Coffea canephora HOM05D005222 ORTHO05D006230 1.3e-25 119.4 78 70.5
Glyma.04G198900 Glycine max HOM05D005222 ORTHO05D006230 2.2e-25 118.6 77 74.0
Glyma.06G166600 Glycine max HOM05D005222 ORTHO05D006230 2.2e-25 118.6 77 74.0
Carub.0008s1080 Capsella rubella HOM05D005222 ORTHO05D006230 3.8e-25 117.9 76 72.4
Solyc06g072600.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 3.8e-25 117.9 77 68.8
Sopen06g028950 Solanum pennellii HOM05D005222 ORTHO05D006230 3.8e-25 117.9 77 68.8
Ca_16071_v3 Cicer arietinum L. HOM05D005222 ORTHO05D006230 4.9e-25 117.5 77 71.4
Phvul.009G163100 Phaseolus vulgaris HOM05D005222 ORTHO05D006230 4.9e-25 117.5 77 72.7
Hund02474 Selenicereus undatus HOM05D005222 ORTHO05D006230 4.9e-25 117.5 77 74.0
Duzib084G0042 Durio zibethinus HOM05D005222 ORTHO05D006230 6.4e-25 117.1 74 74.3
FvH4_5g08990 Fragaria vesca HOM05D005222 ORTHO05D006230 6.4e-25 117.1 77 68.8
FAN13G0479 Fragaria x ananassa HOM05D005222 ORTHO05D006230 6.4e-25 117.1 77 68.8
THA.LOC104811566 Tarenaya hassleriana HOM05D005222 ORTHO05D006230 6.4e-25 117.1 77 72.7
ECA232G5061 Erigeron canadensis HOM05D005222 ORTHO05D006230 8.4e-25 116.7 77 71.4
Medtr3g098820 Medicago truncatula HOM05D005222 ORTHO05D006230 8.4e-25 116.7 77 68.8
Nitab4.5_0011312g0030 Nicotiana tabacum HOM05D005222 ORTHO05D006230 8.4e-25 116.7 78 67.9
Peaxi162Scf00516g00032 Petunia axillaris HOM05D005222 ORTHO05D006230 8.4e-25 116.7 78 74.4
FAN08G1832 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.1e-24 116.3 77 67.5
PSO063G7191 Papaver somniferum HOM05D005222 ORTHO05D006230 1.1e-24 116.3 73 75.3
PSO782G1904 Papaver somniferum HOM05D005222 ORTHO05D006230 1.1e-24 116.3 73 75.3
SEGI_36916 Sequoiadendron giganteum HOM05D005222 ORTHO05D006230 1.1e-24 116.3 77 68.8
RcHm_v2.0_Chr7g0189291 Rosa chinensis HOM05D005222 ORTHO05D006230 1.9e-24 115.5 77 71.4
ATR0582G313 Amborella trichopoda HOM05D005222 ORTHO05D006230 2.4e-24 115.2 77 70.1
AT5G50810 Arabidopsis thaliana HOM05D005222 ORTHO05D006230 3.2e-24 114.8 76 71.1
Lalb_Chr08g0237411 Lupinus albus HOM05D005222 ORTHO05D006230 3.2e-24 114.8 77 68.8
Sp6g12920 Schrenkiella parvula HOM05D005222 ORTHO05D006230 3.2e-24 114.8 76 72.4
FAN04G2766 Fragaria x ananassa HOM05D005222 ORTHO05D006230 4.2e-24 114.4 77 67.5
QL05p049336 Quercus lobata HOM05D005222 ORTHO05D006230 7.1e-24 113.6 77 67.5
QL10p001732 Quercus lobata HOM05D005222 ORTHO05D006230 7.1e-24 113.6 77 67.5
CSS0012412 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 1.2e-23 112.8 64 84.4
PGSC0003DMG400004338 Solanum tuberosum HOM05D005222 ORTHO05D006230 1.2e-23 112.8 78 69.2
PGSC0003DMG400027040 Solanum tuberosum HOM05D005222 ORTHO05D006230 1.6e-23 112.5 99 57.6
CARHR257460 Cardamine hirsuta HOM05D005222 ORTHO05D006230 2.7e-23 111.7 76 71.1
Lj1g0004473 Lotus japonicus HOM05D005222 ORTHO05D006230 2.7e-23 111.7 77 67.5
CSS0000670 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 3.5e-23 111.3 64 82.8
TAR629G0657 Trochodendron aralioides HOM05D005222 ORTHO05D006230 3.5e-23 111.3 62 83.9
Os08g0535600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 4.6e-23 110.9 69 75.4
Mapoly0022s0111 Marchantia polymorpha HOM05D005222 ORTHO05D006230 1.0e-22 109.8 77 67.5
Sc07g0003580 Simmondsia chinensis HOM05D005222 ORTHO05D006230 1.0e-22 109.8 77 70.1
Sopen03g028390 Solanum pennellii HOM05D005222 ORTHO05D006230 1.0e-22 109.8 78 66.7
TPR.G21582 Trifolium pratense HOM05D005222 ORTHO05D006230 1.3e-22 109.4 77 63.6
FAN18G1799 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.8e-22 109.0 84 63.1
Gorai.008G209300 Gossypium raimondii HOM05D005222 ORTHO05D006230 1.8e-22 109.0 63 82.5
Lj4g0026334 Lotus japonicus HOM05D005222 ORTHO05D006230 1.8e-22 109.0 77 64.9
Pp3c22_9040 Physcomitrium patens HOM05D005222 ORTHO05D006230 1.8e-22 109.0 73 69.9
Thhalv10015178m.g Eutrema salsugineum HOM05D005222 ORTHO05D006230 2.3e-22 108.6 76 68.4
Sabra12G0075900 Salix brachista HOM05D005222 ORTHO05D006230 3.0e-22 108.2 114 52.6
CSS0034357 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 3.9e-22 107.8 69 73.9
AUR62029544 Chenopodium quinoa HOM05D005222 ORTHO05D006230 5.1e-22 107.5 73 67.1
AUR62034814 Chenopodium quinoa HOM05D005222 ORTHO05D006230 5.1e-22 107.5 73 67.1
arahy.Tifrunner.gnm1.ann1.122S7D Arachis hypogaea HOM05D005222 ORTHO05D006230 8.7e-22 106.7 77 64.9
Solyc03g097640.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 8.7e-22 106.7 76 65.8
MELO3C026182.2 Cucumis melo HOM05D005222 ORTHO05D006230 1.1e-21 106.3 73 72.6
CARHR232420 Cardamine hirsuta HOM05D005222 ORTHO05D006230 1.5e-21 105.9 76 67.1
Glyma.05G202400 Glycine max HOM05D005222 ORTHO05D006230 2.5e-21 105.1 77 64.9
arahy.Tifrunner.gnm1.ann1.5QWD0G Arachis hypogaea HOM05D005222 ORTHO05D006230 3.3e-21 104.8 77 63.6
Zm00001eb036900 Zea mays HOM05D005222 ORTHO05D006230 1.3e-20 102.8 70 65.7
A01p16290 Brassica napus HOM05D005222 ORTHO05D006230 2.8e-20 101.7 76 61.8
ClCG04G004850 Citrullus lanatus HOM05D005222 ORTHO05D006230 3.7e-20 101.3 59 79.7
BcaNung03992 Brassica carinata HOM05D005222 ORTHO05D006230 4.8e-20 100.9 76 60.5
BcaC09g50823 Brassica carinata HOM05D005222 ORTHO05D006230 6.2e-20 100.5 76 60.5
C01p20320 Brassica napus HOM05D005222 ORTHO05D006230 6.2e-20 100.5 76 60.5
BolC1t01961H Brassica oleracea HOM05D005222 ORTHO05D006230 6.2e-20 100.5 76 60.5
BraA01t01568Z Brassica rapa HOM05D005222 ORTHO05D006230 6.2e-20 100.5 76 60.5
VMungo0464G1435 Vigna mungo HOM05D005222 ORTHO05D006230 1.8e-19 99.0 58 79.3
Aqoxy3G01691 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 2.4e-19 98.6 73 63.0
A03p16580 Brassica napus HOM05D005222 ORTHO05D006230 2.4e-19 98.6 75 61.3
C03p19510 Brassica napus HOM05D005222 ORTHO05D006230 2.4e-19 98.6 75 61.3
BolC3t14332H Brassica oleracea HOM05D005222 ORTHO05D006230 2.4e-19 98.6 75 61.3
BraA03t10945Z Brassica rapa HOM05D005222 ORTHO05D006230 2.4e-19 98.6 75 61.3
Zm00001eb175490 Zea mays HOM05D005222 ORTHO05D006230 2.4e-19 98.6 69 66.7
ATR1096G067 Amborella trichopoda HOM05D005222 ORTHO05D006230 4.0e-19 97.8 76 57.9
Nitab4.5_0000033g0050 Nicotiana tabacum HOM05D005222 ORTHO05D006230 5.3e-19 97.4 63 69.8
Os12g0128600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 5.3e-19 97.4 76 60.5
Os11g0131700 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 1.2e-18 96.3 76 59.2
MBI13_g38964_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 1.5e-18 95.9 77 55.8
COL.COLO4_16662 Corchorus olitorius HOM05D005222 ORTHO05D006230 2.0e-18 95.5 55 83.6
AL8G24980 Arabidopsis lyrata HOM05D005222 ORTHO05D006230 1.0e-17 93.2 54 79.6
Nn7g37129 Nelumbo nucifera HOM05D005222 ORTHO05D006230 2.9e-17 91.7 80 52.5
Aqoxy5G03239 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 3.8e-17 91.3 73 57.5
Pp3c18_15660 Physcomitrium patens HOM05D005222 ORTHO05D006230 3.8e-17 91.3 64 65.6
SMO356G0192 Selaginella moellendorffii HOM05D005222 ORTHO05D006230 4.9e-17 90.9 59 66.1
C06p12810 Brassica napus HOM05D005222 ORTHO05D006230 3.2e-16 88.2 62 66.1
BcaC08g43896 Brassica carinata HOM05D005222 ORTHO05D006230 7.1e-16 87.0 60 66.7
Zm00001eb163550 Zea mays HOM05D005222 ORTHO05D006230 1.2e-15 86.3 73 54.8
Psat5g053520 Pisum sativum HOM05D001135 ORTHO05D006230 1.6e-15 85.9 53 67.9
CAN.G101.22 Capsicum annuum HOM05D005222 ORTHO05D006230 6.0e-15 84.0 53 69.8
HPP92_001283 Vanilla planifolia HOM05D005222 ORTHO05D006230 1.1e-11 73.2 59 55.9
AagrBONN_evm.TU.Sc2ySwM_362.856 Anthoceros agrestis HOM05D005222 ORTHO05D006230 2.4e-11 72.0 47 68.1
FvH4_5g07110 Fragaria vesca HOM05D005222 ORTHO05D006230 7.6e-10 67.0 66 51.5
MCO14G257 Micromonas commoda HOM05D005222 ORTHO05D006230 1.3e-09 66.2 80 45.0
FAN08G2230 Fragaria x ananassa HOM05D005222 ORTHO05D006230 3.2e-08 61.6 72 45.8
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 3.2e-08 61.6 79 38.0


User provided reference genes

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