Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0165100 Rhododendron simsii HOM05D016450 ORTHO05D017862 1.6e-288 995.3 475 100.0
Cc06_g07010 Coffea canephora HOM05D016450 ORTHO05D017862 7.2e-44 182.6 378 29.9
TAR369G0689 Trochodendron aralioides HOM05D023324 ORTHO05D000827 4.4e-25 120.2 337 27.3
TAR624G0483 Trochodendron aralioides HOM05D001028 ORTHO05D000827 7.5e-25 119.4 384 25.3
PSO386G0089 Papaver somniferum HOM05D008063 ORTHO05D009799 1.9e-20 104.8 340 25.6
PSO423G0048 Papaver somniferum HOM05D008063 ORTHO05D009799 1.5e-17 95.1 380 24.2
DCAR_015536 Daucus carota HOM05D016450 ORTHO05D017862 3.4e-17 94.0 176 29.5
PSO541G0945 Papaver somniferum HOM05D008063 ORTHO05D009799 4.4e-17 93.6 367 24.8
AT2G25010 Arabidopsis thaliana HOM05D000176 ORTHO05D000106 1.7e-16 91.7 308 26.3
DCAR_015534 Daucus carota HOM05D016450 ORTHO05D017862 1.7e-16 91.7 170 31.2
Thhalv10002429m.g Eutrema salsugineum HOM05D000176 ORTHO05D000106 2.2e-16 91.3 289 26.0
Sabra01G0157300 Salix brachista HOM05D000176 ORTHO05D000106 2.2e-16 91.3 303 23.8
PSO210G5487 Papaver somniferum HOM05D008063 ORTHO05D009799 1.1e-15 89.0 366 23.2
AL4G16100 Arabidopsis lyrata HOM05D000176 ORTHO05D000106 1.4e-15 88.6 303 26.1
CARHR102890 Cardamine hirsuta HOM05D000176 ORTHO05D000106 1.9e-15 88.2 289 25.6
Sp3g23470 Schrenkiella parvula HOM05D000176 ORTHO05D000106 4.1e-15 87.0 289 26.0
AUR62022514 Chenopodium quinoa HOM05D000176 ORTHO05D000106 5.4e-15 86.7 306 23.9
AT2G04865 Arabidopsis thaliana HOM05D000176 ORTHO05D000106 9.2e-15 85.9 289 26.0
BcaB06g28031 Brassica carinata HOM05D000176 ORTHO05D000106 1.2e-14 85.5 309 26.5
DCAR_013464 Daucus carota HOM05D016450 ORTHO05D017862 1.2e-14 85.5 146 32.2
THA.LOC104823099 Tarenaya hassleriana HOM05D000176 ORTHO05D000106 1.2e-14 85.5 300 26.7
GSVIVG01017117001 Vitis vinifera HOM05D000176 ORTHO05D003511 1.6e-14 85.1 318 25.5
AL3G42490 Arabidopsis lyrata HOM05D000176 ORTHO05D000106 2.1e-14 84.7 289 26.0
A03p44500 Brassica napus HOM05D000176 ORTHO05D000106 2.1e-14 84.7 289 24.6
C03p55310 Brassica napus HOM05D000176 ORTHO05D000106 2.1e-14 84.7 289 24.6
BolC3t17803H Brassica oleracea HOM05D000176 ORTHO05D000106 2.1e-14 84.7 289 24.6
BraA03t13583Z Brassica rapa HOM05D000176 ORTHO05D000106 2.1e-14 84.7 289 24.6
AUR62038386 Chenopodium quinoa HOM05D000176 ORTHO05D000106 2.1e-14 84.7 307 23.5
AUR62038389 Chenopodium quinoa HOM05D000176 ORTHO05D000106 2.1e-14 84.7 307 23.5
Sp4g03990 Schrenkiella parvula HOM05D000176 ORTHO05D000106 2.7e-14 84.3 309 25.6
BcaC02g08378 Brassica carinata HOM05D000176 ORTHO05D000106 3.5e-14 84.0 309 26.2
C04p55010 Brassica napus HOM05D000176 ORTHO05D000106 3.5e-14 84.0 309 26.2
A04p19430 Brassica napus HOM05D000176 ORTHO05D000106 7.8e-14 82.8 309 26.2
Thhalv10000135m.g Eutrema salsugineum HOM05D000176 ORTHO05D000106 7.8e-14 82.8 299 24.1
QL08p043592 Quercus lobata HOM05D000176 ORTHO05D000106 1.0e-13 82.4 290 23.8
Hund07743 Selenicereus undatus HOM05D000176 ORTHO05D000106 1.0e-13 82.4 308 23.7
PSO151G0114 Papaver somniferum HOM05D008063 ORTHO05D009799 1.3e-13 82.0 390 22.3
PSO333G0034 Papaver somniferum HOM05D008063 ORTHO05D009799 1.7e-13 81.6 387 22.2
Aa31sc83G70 Aethionema arabicum HOM05D000176 ORTHO05D000106 2.3e-13 81.3 303 24.1
Lalb_Chr20g0114151 Lupinus albus HOM05D000176 ORTHO05D000106 2.3e-13 81.3 289 24.2
MELO3C019704.2 Cucumis melo HOM05D000176 ORTHO05D000106 3.0e-13 80.9 299 24.7
MD17G1142200 Malus domestica HOM05D000176 ORTHO05D000106 3.9e-13 80.5 299 23.4
Lj6g0005713 Lotus japonicus HOM05D000176 ORTHO05D000106 5.1e-13 80.1 289 24.2
Lalb_Chr15g0080531 Lupinus albus HOM05D000176 ORTHO05D000106 5.1e-13 80.1 293 23.2
CsaV3_6G015670 Cucumis sativus L. HOM05D000176 ORTHO05D000106 6.6e-13 79.7 303 23.8
Psat5g183880 Pisum sativum HOM05D000176 ORTHO05D000106 8.6e-13 79.3 298 23.2
BolC4t27041H Brassica oleracea HOM05D000176 ORTHO05D000106 1.1e-12 79.0 311 26.0
EL10As19g24186 Beta vulgaris HOM05D000176 ORTHO05D000106 1.5e-12 78.6 286 24.1
BraA04t17538Z Brassica rapa HOM05D000176 ORTHO05D000106 1.9e-12 78.2 311 26.0
TAR703G0001 Trochodendron aralioides HOM05D001028 ORTHO05D009799 1.9e-12 78.2 176 30.7
VMungo0540G2186 Vigna mungo HOM05D000176 ORTHO05D000106 1.9e-12 78.2 304 22.4
MD17G1142300 Malus domestica HOM05D000176 ORTHO05D000106 4.3e-12 77.0 286 23.1
Ah.16g107440 Amaranthus hybridus HOM05D000176 ORTHO05D000106 7.3e-12 76.3 297 22.2
Ca_14624_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 7.3e-12 76.3 293 22.9
arahy.Tifrunner.gnm1.ann1.6TXF5J Arachis hypogaea HOM05D000176 ORTHO05D000106 9.5e-12 75.9 380 21.6
arahy.Tifrunner.gnm1.ann1.PINR01 Arachis hypogaea HOM05D000176 ORTHO05D000106 9.5e-12 75.9 380 21.3
TWI36G1460 Tripterygium wilfordii HOM05D000176 ORTHO05D000106 1.2e-11 75.5 293 21.5
Migut.K00126 Erythranthe guttata HOM05D000176 ORTHO05D000106 2.1e-11 74.7 294 23.8
Lj3C925T6 Lonicera japonica HOM05D000176 ORTHO05D000106 2.1e-11 74.7 299 23.1
MD09G1156100 Malus domestica HOM05D000176 ORTHO05D000106 2.1e-11 74.7 286 22.7
Sed0012746 Sechium edule HOM05D000176 ORTHO05D000106 2.1e-11 74.7 299 23.1
vmacro07091 Vaccinium macrocarpon HOM05D001028 ORTHO05D000827 2.1e-11 74.7 303 26.4
Prupe.3G047800 Prunus persica HOM05D000176 ORTHO05D000106 2.8e-11 74.3 287 22.6
vmacro10773 Vaccinium macrocarpon HOM05D015182 ORTHO05D000827 2.8e-11 74.3 315 25.7
Actinidia11188 Actinidia chinensis HOM05D000176 ORTHO05D000106 3.6e-11 73.9 299 22.7
Ciclev10025397m.g Citrus clementina HOM05D000176 ORTHO05D000106 3.6e-11 73.9 307 22.5
TPR.G1842 Trifolium pratense HOM05D000176 ORTHO05D000106 3.6e-11 73.9 291 23.0
GSVIVG01006780001 Vitis vinifera HOM05D000176 ORTHO05D000106 3.6e-11 73.9 294 21.8
MD09G1191600 Malus domestica HOM05D000176 ORTHO05D000106 4.7e-11 73.6 287 23.3
Prupe.3G169000 Prunus persica HOM05D000176 ORTHO05D000106 4.7e-11 73.6 298 23.2
Eucgr.A01958 Eucalyptus grandis HOM05D000176 ORTHO05D000106 6.2e-11 73.2 299 22.1
C05p16290 Brassica napus HOM05D000176 ORTHO05D000106 1.1e-10 72.4 296 24.3
BolC5t30331H Brassica oleracea HOM05D000176 ORTHO05D000106 1.1e-10 72.4 296 24.3
FvH4_3g28611 Fragaria vesca HOM05D000176 ORTHO05D000106 1.1e-10 72.4 311 23.2
RcHm_v2.0_Chr2g0150841 Rosa chinensis HOM05D000176 ORTHO05D000106 1.1e-10 72.4 309 23.0
RcHm_v2.0_Chr2g0143601 Rosa chinensis HOM05D000176 ORTHO05D000106 1.4e-10 72.0 300 22.0
Prupe.4G252400 Prunus persica HOM05D000176 ORTHO05D000106 1.8e-10 71.6 299 22.1
arahy.Tifrunner.gnm1.ann1.B0WW5W Arachis hypogaea HOM05D000176 ORTHO05D000106 3.1e-10 70.9 293 22.2
arahy.Tifrunner.gnm1.ann1.ZG7XLL Arachis hypogaea HOM05D000176 ORTHO05D000106 3.1e-10 70.9 293 22.2
A06p13970 Brassica napus HOM05D000176 ORTHO05D000106 4.0e-10 70.5 295 23.7
BraA06t24537Z Brassica rapa HOM05D000176 ORTHO05D000106 4.0e-10 70.5 295 23.7
MSTRG.10797 Avicennia marina HOM05D000176 ORTHO05D000106 6.8e-10 69.7 297 21.2
FvH4_6g33711 Fragaria vesca HOM05D000176 ORTHO05D000106 1.5e-09 68.6 306 21.6
PGR004G2764 Punica granatum HOM05D000176 ORTHO05D000106 2.6e-09 67.8 240 26.7
FvH4_6g37771 Fragaria vesca HOM05D000176 ORTHO05D000106 3.4e-09 67.4 299 21.4
PSO079G0048 Papaver somniferum HOM05D008063 ORTHO05D009799 3.4e-09 67.4 246 24.0
Cc00_g31750 Coffea canephora HOM05D001028 ORTHO05D000827 4.4e-09 67.0 316 25.3
Oeu063771.2 Olea europaea HOM05D000176 ORTHO05D000106 4.4e-09 67.0 294 22.4
QL05p010466 Quercus lobata HOM05D000176 ORTHO05D000106 4.4e-09 67.0 287 22.0
RcHm_v2.0_Chr5g0052481 Rosa chinensis HOM05D000176 ORTHO05D000106 7.5e-09 66.2 287 22.6
Aqoxy1G01649 Aquilegia oxysepala HOM05D001028 ORTHO05D009799 1.3e-08 65.5 372 23.9
vmacro08423 Vaccinium macrocarpon HOM05D001028 ORTHO05D000827 1.3e-08 65.5 74 43.2
arahy.Tifrunner.gnm1.ann1.ULKS2B Arachis hypogaea HOM05D000176 ORTHO05D000106 1.7e-08 65.1 266 27.1
Dinv11360 Davidia involucrata HOM05D000176 ORTHO05D000106 1.7e-08 65.1 218 28.9
Dinv16983 Davidia involucrata HOM05D000176 ORTHO05D000106 1.7e-08 65.1 218 28.9
vmacro17280 Vaccinium macrocarpon HOM05D001028 ORTHO05D000827 1.7e-08 65.1 307 25.4
vmacro20367 Vaccinium macrocarpon HOM05D000176 ORTHO05D000106 1.7e-08 65.1 260 27.7
PSO339G1677 Papaver somniferum HOM05D008063 ORTHO05D009799 2.2e-08 64.7 263 22.1
Cc00_g09720 Coffea canephora HOM05D001028 ORTHO05D000827 3.7e-08 63.9 333 22.5
vmacro05414 Vaccinium macrocarpon HOM05D001028 ORTHO05D000827 8.3e-08 62.8 61 44.3
Peaxi162Scf00146g01211 Petunia axillaris HOM05D000176 ORTHO05D000106 1.4e-07 62.0 223 26.5
arahy.Tifrunner.gnm1.ann1.1V6YN4 Arachis hypogaea HOM05D000176 ORTHO05D000106 2.4e-07 61.2 314 22.9
arahy.Tifrunner.gnm1.ann1.T1UFTC Arachis hypogaea HOM05D000176 ORTHO05D000106 3.2e-07 60.8 234 26.9
Sc02g0000190 Simmondsia chinensis HOM05D000176 ORTHO05D000106 3.2e-07 60.8 223 27.4
Lalb_Chr12g0207711 Lupinus albus HOM05D000176 ORTHO05D000106 4.1e-07 60.5 245 24.5
TWI53G0034 Tripterygium wilfordii HOM05D000176 ORTHO05D000106 5.4e-07 60.1 232 24.6
Aqoxy6G02164 Aquilegia oxysepala HOM05D001028 ORTHO05D009799 7.1e-07 59.7 371 23.5
EL10Ac2g02958 Beta vulgaris HOM05D000176 ORTHO05D000106 7.1e-07 59.7 217 27.2
CSS0013275 Camellia sinensis var. sinensis HOM05D001028 ORTHO05D000827 7.1e-07 59.7 152 30.9
HanXRQChr06g0181031 Helianthus annuus HOM05D000176 ORTHO05D000106 9.2e-07 59.3 234 26.5


User provided reference genes

Program Settings