Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0163400 Rhododendron simsii HOM05D003549 ORTHO05D004223 2.0e-33 145.2 75 100.0
CiPaw.12G025200 Carya illinoinensis HOM05D003549 ORTHO05D004223 9.1e-26 119.8 75 81.3
TAR629G2438 Trochodendron aralioides HOM05D003549 ORTHO05D004223 7.7e-25 116.7 72 83.3
CiPaw.11G028500 Carya illinoinensis HOM05D003549 ORTHO05D004223 6.5e-24 113.6 75 80.0
Sed0001837 Sechium edule HOM05D003549 ORTHO05D004223 6.5e-24 113.6 73 80.8
TWI60G0590 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 1.4e-23 112.5 73 83.6
Dinv33505 Davidia involucrata HOM05D003549 ORTHO05D004223 7.2e-23 110.2 72 80.6
SGA_v2.0_scaffold90G27958 Striga asiatica HOM05D000215 ORTHO05D003454 1.6e-22 109.0 74 79.7
TWI15G0885 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 2.1e-22 108.6 73 79.5
TWI81G0050 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 2.1e-22 108.6 73 79.5
TWI81G1057 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 2.1e-22 108.6 73 79.5
Nn8g39923 Nelumbo nucifera HOM05D003549 ORTHO05D004223 2.7e-22 108.2 73 75.3
Phvul.001G059000 Phaseolus vulgaris HOM05D003549 ORTHO05D004223 2.7e-22 108.2 72 79.2
RcHm_v2.0_Chr7g0193821 Rosa chinensis HOM05D003549 ORTHO05D004223 4.7e-22 107.5 74 78.4
Aqoxy3G00995 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 1.0e-21 106.3 75 80.0
Peaxi162Scf00017g02716 Petunia axillaris HOM05D003549 ORTHO05D004223 1.0e-21 106.3 74 78.4
Glyma.04G181200 Glycine max HOM05D003549 ORTHO05D004223 1.4e-21 105.9 72 79.2
Nitab4.5_0000852g0140 Nicotiana tabacum HOM05D003549 ORTHO05D004223 1.4e-21 105.9 74 78.4
Nitab4.5_0003857g0060 Nicotiana tabacum HOM05D003549 ORTHO05D004223 1.4e-21 105.9 74 78.4
Haze_07495 Corylus avellana HOM05D003549 ORTHO05D004223 1.8e-21 105.5 72 79.2
RcHm_v2.0_Chr7g0184521 Rosa chinensis HOM05D003549 ORTHO05D004223 1.8e-21 105.5 74 77.0
Actinidia33056 Actinidia chinensis HOM05D000215 ORTHO05D003454 2.3e-21 105.1 73 78.1
Lj6g0023924 Lotus japonicus HOM05D003549 ORTHO05D004223 2.3e-21 105.1 72 76.4
SalBow2G1727 Salvia bowleyana HOM05D003549 ORTHO05D004223 3.0e-21 104.8 74 75.7
Glyma.14G134200 Glycine max HOM05D003549 ORTHO05D004223 5.2e-21 104.0 72 76.4
Ca_16195_v3 Cicer arietinum L. HOM05D003549 ORTHO05D004223 6.7e-21 103.6 72 76.4
Cc04_g12860 Coffea canephora HOM05D003549 ORTHO05D004223 6.7e-21 103.6 74 77.0
FAN04G1549 Fragaria x ananassa HOM05D003549 ORTHO05D004223 6.7e-21 103.6 74 75.7
FAN08G2999 Fragaria x ananassa HOM05D003549 ORTHO05D004223 6.7e-21 103.6 74 75.7
FAN13G2761 Fragaria x ananassa HOM05D003549 ORTHO05D004223 6.7e-21 103.6 74 75.7
Glyma.17G198800 Glycine max HOM05D003549 ORTHO05D004223 6.7e-21 103.6 70 77.1
PSO017G2368 Papaver somniferum HOM05D003549 ORTHO05D004223 6.7e-21 103.6 72 72.2
PSO478G4862 Papaver somniferum HOM05D003549 ORTHO05D004223 8.8e-21 103.2 72 72.2
Glyma.06G183700 Glycine max HOM05D003549 ORTHO05D004223 1.1e-20 102.8 72 76.4
Lj1g0007079 Lotus japonicus HOM05D003549 ORTHO05D004223 1.5e-20 102.4 72 75.0
CsaV3_1G008390 Cucumis sativus L. HOM05D003549 ORTHO05D004223 2.0e-20 102.1 73 79.5
Actinidia04982 Actinidia chinensis HOM05D000215 ORTHO05D003454 2.6e-20 101.7 73 76.7
Psat5g114160 Pisum sativum HOM05D003549 ORTHO05D004223 4.4e-20 100.9 72 76.4
ClCG01G013030 Citrullus lanatus HOM05D003549 ORTHO05D004223 7.4e-20 100.1 73 78.1
Rhsim08G0170600 Rhododendron simsii HOM05D003549 ORTHO05D004223 7.4e-20 100.1 77 72.7
GSVIVG01032498001 Vitis vinifera HOM05D003549 ORTHO05D004223 9.7e-20 99.8 72 70.8
FvH4_5g05150 Fragaria vesca HOM05D003549 ORTHO05D004223 1.3e-19 99.4 74 73.0
FAN18G4010 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.3e-19 99.4 74 73.0
Phvul.009G179900 Phaseolus vulgaris HOM05D003549 ORTHO05D004223 1.3e-19 99.4 72 72.2
THA.LOC109116495 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 1.3e-19 99.4 72 75.0
Lalb_Chr08g0236401 Lupinus albus HOM05D003549 ORTHO05D004223 2.2e-19 98.6 72 73.6
QL02p076964 Quercus lobata HOM05D003549 ORTHO05D004223 2.2e-19 98.6 72 70.8
Dinv09155 Davidia involucrata HOM05D003549 ORTHO05D004223 4.8e-19 97.4 72 70.8
MD06G1177000 Malus domestica HOM05D003549 ORTHO05D004223 6.3e-19 97.1 74 68.9
Actinidia19094 Actinidia chinensis HOM05D003549 ORTHO05D004223 8.2e-19 96.7 72 73.6
Hma1.2p1_0802F.1_g220520 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 8.2e-19 96.7 70 72.9
PSO063G4497 Papaver somniferum HOM05D003549 ORTHO05D004223 1.1e-18 96.3 71 70.4
Lsat_1_v5_gn_4_74920 Lactuca sativa HOM05D003549 ORTHO05D004223 1.8e-18 95.5 75 72.0
Solyc03g114170.3 Solanum lycopersicum HOM05D003549 ORTHO05D004223 1.8e-18 95.5 74 71.6
ECA232G0606 Erigeron canadensis HOM05D003549 ORTHO05D004223 3.1e-18 94.7 73 71.2
MD14G1183200 Malus domestica HOM05D003549 ORTHO05D004223 3.1e-18 94.7 74 68.9
Medtr3g078130 Medicago truncatula HOM05D003549 ORTHO05D004223 3.1e-18 94.7 72 70.8
Peaxi162Scf00535g00046 Petunia axillaris HOM05D003549 ORTHO05D004223 3.1e-18 94.7 74 70.3
CSS0022405 Camellia sinensis var. sinensis HOM05D003549 ORTHO05D004223 4.1e-18 94.4 72 73.6
Hma1.2p1_0176F.1_g077660 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 4.1e-18 94.4 72 72.2
PGSC0003DMG400024492 Solanum tuberosum HOM05D003549 ORTHO05D004223 4.1e-18 94.4 74 70.3
Oeu000929.1 Olea europaea HOM05D003549 ORTHO05D004223 5.3e-18 94.0 73 72.6
BcaB03g15337 Brassica carinata HOM05D003549 ORTHO05D004223 7.0e-18 93.6 73 71.2
BcaB05g23601 Brassica carinata HOM05D003549 ORTHO05D004223 7.0e-18 93.6 76 69.7
MBI15_g31119_MAGBIO Magnolia biondii HOM05D003549 ORTHO05D004223 7.0e-18 93.6 75 70.7
arahy.Tifrunner.gnm1.ann1.G4GSC6 Arachis hypogaea HOM05D003549 ORTHO05D004223 9.1e-18 93.2 72 72.2
arahy.Tifrunner.gnm1.ann1.TT1NYY Arachis hypogaea HOM05D003549 ORTHO05D004223 9.1e-18 93.2 72 72.2
Sed0023520 Sechium edule HOM05D003549 ORTHO05D004223 9.1e-18 93.2 73 74.0
THA.LOC104805767 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 9.1e-18 93.2 75 70.7
HanXRQChr16g0517241 Helianthus annuus HOM05D003549 ORTHO05D004223 1.6e-17 92.4 75 70.7
Prupe.5G175700 Prunus persica HOM05D003549 ORTHO05D004223 1.6e-17 92.4 74 67.6
Sopen03g033240 Solanum pennellii HOM05D003549 ORTHO05D004223 1.6e-17 92.4 74 68.9
PSO832G2372 Papaver somniferum HOM05D003549 ORTHO05D004223 3.5e-17 91.3 71 67.6
Potri.001G334600 Populus trichocarpa HOM05D003549 ORTHO05D004223 3.5e-17 91.3 72 70.8
TAR622G0024 Trochodendron aralioides HOM05D003549 ORTHO05D004223 3.5e-17 91.3 72 70.8
TAR622G1417 Trochodendron aralioides HOM05D003549 ORTHO05D004223 3.5e-17 91.3 72 70.8
ClCG08G009420 Citrullus lanatus HOM05D003549 ORTHO05D004223 4.5e-17 90.9 73 71.2
MELO3C026538.2 Cucumis melo HOM05D003549 ORTHO05D004223 4.5e-17 90.9 73 71.2
CsaV3_6G031560 Cucumis sativus L. HOM05D003549 ORTHO05D004223 4.5e-17 90.9 73 71.2
Duzib205G0517 Durio zibethinus HOM05D003549 ORTHO05D004223 5.9e-17 90.5 73 68.5
Ciclev10023184m.g Citrus clementina HOM05D003549 ORTHO05D004223 1.0e-16 89.7 72 68.1
Gohir.A07G060300 Gossypium hirsutum HOM05D003549 ORTHO05D004223 1.0e-16 89.7 76 69.7
Mapoly0025s0126 Marchantia polymorpha HOM05D003549 ORTHO05D004223 1.0e-16 89.7 66 74.2
Migut.D01775 Erythranthe guttata HOM05D003549 ORTHO05D004223 2.2e-16 88.6 74 70.3
Duzib084G0774 Durio zibethinus HOM05D003549 ORTHO05D004223 2.9e-16 88.2 73 71.2
Hma1.2p1_0967F.1_g242260 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 3.8e-16 87.8 82 62.2
Nn2g12408 Nelumbo nucifera HOM05D003549 ORTHO05D004223 3.8e-16 87.8 75 68.0
Potri.017G066900 Populus trichocarpa HOM05D003549 ORTHO05D004223 6.5e-16 87.0 72 68.1
Thecc.03G009800 Theobroma cacao HOM05D003549 ORTHO05D004223 8.5e-16 86.7 73 68.5
Aa31LG2G1940 Aethionema arabicum HOM05D003549 ORTHO05D004223 1.1e-15 86.3 73 64.4
TAR371G0468 Trochodendron aralioides HOM05D003549 ORTHO05D004223 1.1e-15 86.3 72 69.4
A07p32720 Brassica napus HOM05D003549 ORTHO05D004223 1.9e-15 85.5 70 71.4
C06p38930 Brassica napus HOM05D003549 ORTHO05D004223 1.9e-15 85.5 70 71.4
BolC6t38985H Brassica oleracea HOM05D003549 ORTHO05D004223 1.9e-15 85.5 70 71.4
BraA07t30898Z Brassica rapa HOM05D003549 ORTHO05D004223 1.9e-15 85.5 70 71.4
Ciclev10017382m.g Citrus clementina HOM05D003549 ORTHO05D004223 1.9e-15 85.5 72 65.3
Hund03159 Selenicereus undatus HOM05D003549 ORTHO05D004223 1.9e-15 85.5 76 67.1
DCAR_021678 Daucus carota HOM05D003549 ORTHO05D004223 2.5e-15 85.1 71 70.4
RcHm_v2.0_Chr2g0170951 Rosa chinensis HOM05D003549 ORTHO05D004223 2.5e-15 85.1 72 61.1
TPR.G30392 Trifolium pratense HOM05D003549 ORTHO05D004223 2.5e-15 85.1 80 63.8
Sc04g0001880 Simmondsia chinensis HOM05D003549 ORTHO05D004223 3.2e-15 84.7 71 69.0
Atru.chr9.2446 Acer truncatum HOM05D003549 ORTHO05D004223 4.2e-15 84.3 51 80.4
Zm00001eb332940 Zea mays HOM05D003549 ORTHO05D004223 4.2e-15 84.3 74 62.2
CAN.G628.73 Capsicum annuum HOM05D003549 ORTHO05D004223 5.5e-15 84.0 74 66.2
FAN02G2804 Fragaria x ananassa HOM05D003549 ORTHO05D004223 5.5e-15 84.0 72 61.1
FAN05G0330 Fragaria x ananassa HOM05D003549 ORTHO05D004223 5.5e-15 84.0 72 61.1
FAN09G2996 Fragaria x ananassa HOM05D003549 ORTHO05D004223 5.5e-15 84.0 72 61.1
FAN09G4496 Fragaria x ananassa HOM05D003549 ORTHO05D004223 5.5e-15 84.0 72 61.1
Manes.14G067300 Manihot esculenta HOM05D003549 ORTHO05D004223 5.5e-15 84.0 74 67.6
Sp5g19250 Schrenkiella parvula HOM05D003549 ORTHO05D004223 1.6e-14 82.4 73 64.4
THA.LOC104823782 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 1.6e-14 82.4 73 67.1
Solyc06g071390.3 Solanum lycopersicum HOM05D003549 ORTHO05D004223 2.1e-14 82.0 74 64.9
Sopen06g027670 Solanum pennellii HOM05D003549 ORTHO05D004223 2.1e-14 82.0 74 64.9
BolC2t09796H Brassica oleracea HOM05D003549 ORTHO05D004223 3.6e-14 81.3 77 64.9
Prupe.3G282400 Prunus persica HOM05D003549 ORTHO05D004223 6.1e-14 80.5 72 59.7
Thhalv10022469m.g Eutrema salsugineum HOM05D003549 ORTHO05D004223 8.0e-14 80.1 73 63.0
FvH4_6g50520 Fragaria vesca HOM05D003549 ORTHO05D004223 8.0e-14 80.1 72 58.3
FAN14G1319 Fragaria x ananassa HOM05D003549 ORTHO05D004223 8.0e-14 80.1 72 58.3
CARHR049490 Cardamine hirsuta HOM05D003549 ORTHO05D004223 1.8e-13 79.0 73 61.6
PGSC0003DMG400027096 Solanum tuberosum HOM05D003549 ORTHO05D004223 2.3e-13 78.6 74 63.5
PGR083G2145 Punica granatum HOM05D003549 ORTHO05D004223 5.2e-13 77.4 72 63.9
unitig_26.g9627 Utricularia gibba HOM05D000915 ORTHO05D001662 6.8e-13 77.0 72 61.1
CAN.G781.29 Capsicum annuum HOM05D003549 ORTHO05D004223 8.8e-13 76.6 74 62.2
Cpa.g.sc1914.1 Carica papaya HOM05D003549 ORTHO05D004223 8.8e-13 76.6 46 82.6
HPP92_002194 Vanilla planifolia HOM05D003549 ORTHO05D004223 8.8e-13 76.6 73 58.9
Aqoxy3G00999 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 1.2e-12 76.3 75 64.0
Manes.06G103400 Manihot esculenta HOM05D003549 ORTHO05D004223 1.2e-12 76.3 47 83.0
Peaxi162Scf00689g00329 Petunia axillaris HOM05D003549 ORTHO05D004223 1.5e-12 75.9 74 63.5
Cpa.g.sc124.38 Carica papaya HOM05D003549 ORTHO05D004223 2.0e-12 75.5 73 61.6
Peaxi162Scf00548g00225 Petunia axillaris HOM05D003549 ORTHO05D004223 2.0e-12 75.5 51 70.6
AL8G14410 Arabidopsis lyrata HOM05D003549 ORTHO05D004223 3.4e-12 74.7 73 61.6
Os01g0273000 Oryza sativa ssp. japonica HOM05D003549 ORTHO05D004223 3.4e-12 74.7 72 59.7
AL2G18990 Arabidopsis lyrata HOM05D003549 ORTHO05D004223 4.4e-12 74.3 74 62.2
ECA246G5096 Erigeron canadensis HOM05D003549 ORTHO05D004223 9.7e-12 73.2 64 65.6
SMO139G0002 Selaginella moellendorffii HOM05D003549 ORTHO05D004223 1.7e-11 72.4 66 66.7
CDE05G3179 Ceratophyllum demersum HOM05D003549 ORTHO05D004223 2.2e-11 72.0 73 58.9
Duzib068G0952 Durio zibethinus HOM05D003549 ORTHO05D004223 2.2e-11 72.0 79 60.8
CAN.G650.26 Capsicum annuum HOM05D003549 ORTHO05D004223 2.8e-11 71.6 55 67.3
ECA246G0614 Erigeron canadensis HOM05D001816 ORTHO05D002001 3.7e-11 71.2 42 81.0
SMO145G0027 Selaginella moellendorffii HOM05D003549 ORTHO05D004223 3.7e-11 71.2 63 68.3
CAN.G208.13 Capsicum annuum HOM05D003549 ORTHO05D004223 4.8e-11 70.9 50 72.0
CANSAT64G1109 Cannabis sativa HOM05D003549 ORTHO05D004223 6.3e-11 70.5 72 55.6
HPP92_011135 Vanilla planifolia HOM05D003549 ORTHO05D004223 1.8e-10 68.9 112 45.5
COL.COLO4_34052 Corchorus olitorius HOM05D003549 ORTHO05D004223 2.4e-10 68.6 73 63.0
Eucgr.K02857 Eucalyptus grandis HOM05D003549 ORTHO05D004223 2.4e-10 68.6 68 63.2
TPR.G37556 Trifolium pratense HOM05D003549 ORTHO05D004223 3.1e-10 68.2 73 58.9
ECA247G2394 Erigeron canadensis HOM05D003549 ORTHO05D004223 4.1e-10 67.8 74 55.4
Sc12g0005420 Simmondsia chinensis HOM05D003549 ORTHO05D004223 4.1e-10 67.8 71 59.2
CDE10G0156 Ceratophyllum demersum HOM05D003549 ORTHO05D004223 5.3e-10 67.4 69 59.4
CDE10G1218 Ceratophyllum demersum HOM05D003549 ORTHO05D004223 5.3e-10 67.4 63 61.9
Lalb_Chr11g0071151 Lupinus albus HOM05D003549 ORTHO05D004223 5.3e-10 67.4 72 59.7
DCAR_021565 Daucus carota HOM05D003549 ORTHO05D004223 9.1e-10 66.6 63 63.5
SalBow5G5409 Salvia bowleyana HOM05D003549 ORTHO05D004223 9.1e-10 66.6 76 53.9
AagrBONN_evm.TU.Sc2ySwM_117.1875 Anthoceros agrestis HOM05D003549 ORTHO05D004223 1.2e-09 66.2 71 54.9
Carub.0003s3029 Capsella rubella HOM05D003549 ORTHO05D004223 1.2e-09 66.2 73 57.5
AT5G45010 Arabidopsis thaliana HOM05D003549 ORTHO05D004223 2.7e-09 65.1 73 54.8
QL10p012114 Quercus lobata HOM05D003549 ORTHO05D004223 2.7e-09 65.1 127 39.4
A02p23950 Brassica napus HOM05D003549 ORTHO05D004223 3.5e-09 64.7 77 58.4
HanXRQChr02g0037231 Helianthus annuus HOM05D003549 ORTHO05D004223 4.5e-09 64.3 75 54.7
Cfa019097 Carpinus fangiana HOM05D003549 ORTHO05D004223 5.9e-09 63.9 123 41.5
ATR0752G058 Amborella trichopoda HOM05D003549 ORTHO05D004223 2.2e-08 62.0 70 60.0
C02p37800 Brassica napus HOM05D003549 ORTHO05D004223 3.8e-08 61.2 77 55.8
CBR_g8660 Chara braunii HOM05D003549 ORTHO05D004223 3.8e-08 61.2 71 54.9
Aqoxy3G02997 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 6.5e-08 60.5 67 52.2
AUR62036487 Chenopodium quinoa HOM05D003549 ORTHO05D004223 8.5e-08 60.1 76 55.3
EL10Ac5g10777 Beta vulgaris HOM05D003549 ORTHO05D004223 1.9e-07 58.9 74 54.1
Lsat_1_v5_gn_1_26640 Lactuca sativa HOM05D000122 ORTHO05D004223 4.2e-07 57.8 75 50.7
BraA02t07390Z Brassica rapa HOM05D003549 ORTHO05D004223 7.2e-07 57.0 93 47.3
AUR62037088 Chenopodium quinoa HOM05D003549 ORTHO05D004223 7.2e-07 57.0 76 53.9
Gohir.D07G065000 Gossypium hirsutum HOM05D003549 ORTHO05D004223 7.2e-07 57.0 49 69.4
Gorai.001G068500 Gossypium raimondii HOM05D003549 ORTHO05D004223 7.2e-07 57.0 49 69.4
unitig_749.g13471 Utricularia gibba HOM05D003549 ORTHO05D004223 7.2e-07 57.0 75 54.7
CSS0021629 Camellia sinensis var. sinensis HOM05D003549 ORTHO05D004223 1.2e-06 56.2 30 96.7
Gohir.D12G274100 Gossypium hirsutum HOM05D003549 ORTHO05D004223 1.6e-06 55.8 72 51.4
Gorai.008G294500 Gossypium raimondii HOM05D003549 ORTHO05D004223 1.6e-06 55.8 72 51.4
AT1G64750 Arabidopsis thaliana HOM05D003549 ORTHO05D004223 3.6e-06 54.7 115 40.0
PRCOL_00000142 Prasinoderma coloniale HOM05D003549 ORTHO05D004223 4.7e-06 54.3 75 49.3
AUR62008230 Chenopodium quinoa HOM05D003549 ORTHO05D004223 6.1e-06 53.9 76 51.3
Haze_18696 Corylus avellana HOM05D003549 ORTHO05D004223 6.1e-06 53.9 30 90.0
MCO07G020 Micromonas commoda HOM05D003549 ORTHO05D004223 8.0e-06 53.5 67 52.2


User provided reference genes

Program Settings