Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0162600 Rhododendron simsii HOM05D004802 ORTHO05D005591 3.0e-70 268.5 144 100.0
vmacro16596 Vaccinium macrocarpon HOM05D004802 ORTHO05D005591 7.7e-66 253.8 144 93.8
CSS0033619 Camellia sinensis var. sinensis HOM05D004802 ORTHO05D005591 6.5e-65 250.8 144 93.8
CsaV3_1G001710 Cucumis sativus L. HOM05D004802 ORTHO05D005591 3.0e-62 241.9 144 83.3
CANSAT80G2080 Cannabis sativa HOM05D004802 ORTHO05D005591 2.6e-61 238.8 144 88.2
Sed0010100 Sechium edule HOM05D004802 ORTHO05D005591 1.7e-60 236.1 144 81.9
ECA232G0284 Erigeron canadensis HOM05D004802 ORTHO05D005591 6.3e-60 234.2 144 79.9
MBI18_g21823_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 6.3e-60 234.2 144 86.1
Cfa019082 Carpinus fangiana HOM05D004802 ORTHO05D005591 3.1e-59 231.9 144 82.6
Cpa.g.sc110.33 Carica papaya HOM05D004802 ORTHO05D005591 7.0e-59 230.7 144 80.6
Hma1.2p1_0483F.1_g162710 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 2.7e-58 228.8 144 80.6
SGA_v2.0_scaffold114G31844 Striga asiatica HOM05D004802 ORTHO05D005591 3.5e-58 228.4 144 84.7
GSVIVG01007807001 Vitis vinifera HOM05D004802 ORTHO05D005591 4.5e-58 228.0 144 79.9
Migut.D01783 Erythranthe guttata HOM05D004802 ORTHO05D005591 7.8e-58 227.3 144 79.2
Nitab4.5_0000499g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 1.7e-57 226.1 144 78.5
TAR362G1012 Trochodendron aralioides HOM05D004802 ORTHO05D005591 2.3e-57 225.7 144 78.5
MD14G1184900 Malus domestica HOM05D004802 ORTHO05D005591 5.0e-57 224.6 142 80.3
PGSC0003DMG400024483 Solanum tuberosum HOM05D004802 ORTHO05D005591 5.0e-57 224.6 144 84.7
Actinidia34948 Actinidia chinensis HOM05D004802 ORTHO05D005591 6.6e-57 224.2 133 84.2
DCAR_021562 Daucus carota HOM05D004802 ORTHO05D005591 6.6e-57 224.2 144 77.8
DCAR_016496 Daucus carota HOM05D004802 ORTHO05D005591 8.6e-57 223.8 144 77.8
Solyc03g114050.3 Solanum lycopersicum HOM05D004802 ORTHO05D005591 8.6e-57 223.8 144 80.6
Sopen03g033100 Solanum pennellii HOM05D004802 ORTHO05D005591 8.6e-57 223.8 144 80.6
Eucgr.B00348 Eucalyptus grandis HOM05D004802 ORTHO05D005591 1.1e-56 223.4 146 77.4
PGR083G1798 Punica granatum HOM05D004802 ORTHO05D005591 1.1e-56 223.4 144 79.2
Lsat_1_v5_gn_5_17000 Lactuca sativa HOM05D004802 ORTHO05D005591 1.5e-56 223.0 144 75.0
Glyma.04G171700 Glycine max HOM05D004802 ORTHO05D005591 3.3e-56 221.9 144 77.1
Sp1g06517 Schrenkiella parvula HOM05D004802 ORTHO05D005591 3.3e-56 221.9 144 76.4
HanXRQChr05g0155531 Helianthus annuus HOM05D004802 ORTHO05D005591 5.6e-56 221.1 144 75.7
LjContig00081g0027263 Lotus japonicus HOM05D004802 ORTHO05D005591 5.6e-56 221.1 144 78.5
Potri.014G111100 Populus trichocarpa HOM05D004802 ORTHO05D005591 5.6e-56 221.1 144 77.1
A09p66160 Brassica napus HOM05D004802 ORTHO05D005591 7.3e-56 220.7 144 77.1
BraA09t41954Z Brassica rapa HOM05D004802 ORTHO05D005591 7.3e-56 220.7 144 77.1
AL1G18110 Arabidopsis lyrata HOM05D004802 ORTHO05D005591 9.5e-56 220.3 144 75.7
MSTRG.23103 Avicennia marina HOM05D004802 ORTHO05D005591 1.2e-55 219.9 144 79.9
THA.LOC104818227 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 1.2e-55 219.9 146 75.3
Prupe.5G177600 Prunus persica HOM05D004802 ORTHO05D005591 2.1e-55 219.2 144 76.4
Carub.0005s0629 Capsella rubella HOM05D004802 ORTHO05D005591 2.8e-55 218.8 145 80.0
Glyma.06G192200 Glycine max HOM05D004802 ORTHO05D005591 2.8e-55 218.8 144 77.1
CARHR007640 Cardamine hirsuta HOM05D004802 ORTHO05D005591 4.7e-55 218.0 144 74.3
RcHm_v2.0_Chr7g0179521 Rosa chinensis HOM05D004802 ORTHO05D005591 4.7e-55 218.0 144 76.4
THA.LOC104821462 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 4.7e-55 218.0 146 77.4
TWI75G1644 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 4.7e-55 218.0 144 79.2
Actinidia19087 Actinidia chinensis HOM05D004802 ORTHO05D005591 6.1e-55 217.6 133 82.7
Lalb_Chr23g0265291 Lupinus albus HOM05D004802 ORTHO05D005591 1.0e-54 216.9 150 73.3
BcaC07g41973 Brassica carinata HOM05D004802 ORTHO05D005591 1.4e-54 216.5 148 74.3
BcaC07g42500 Brassica carinata HOM05D004802 ORTHO05D005591 1.4e-54 216.5 147 79.6
C08p50320 Brassica napus HOM05D004802 ORTHO05D005591 1.4e-54 216.5 148 74.3
BolC8t52561H Brassica oleracea HOM05D004802 ORTHO05D005591 1.4e-54 216.5 148 74.3
QL03p066954 Quercus lobata HOM05D004802 ORTHO05D005591 1.4e-54 216.5 143 77.6
Sc16g0001640 Simmondsia chinensis HOM05D004802 ORTHO05D005591 1.4e-54 216.5 145 80.0
BcaB02g06722 Brassica carinata HOM05D004802 ORTHO05D005591 1.8e-54 216.1 147 77.6
ATR0796G060 Amborella trichopoda HOM05D004802 ORTHO05D005591 2.3e-54 215.7 144 73.6
AT1G07830 Arabidopsis thaliana HOM05D004802 ORTHO05D005591 2.3e-54 215.7 145 77.2
BraA06t23701Z Brassica rapa HOM05D004802 ORTHO05D005591 2.3e-54 215.7 145 75.2
BolC5t29353H Brassica oleracea HOM05D000129 ORTHO05D005591 3.0e-54 215.3 145 74.5
PSO170G0191 Papaver somniferum HOM05D004802 ORTHO05D005591 4.0e-54 214.9 148 73.6
Sc12g0005500 Simmondsia chinensis HOM05D004802 ORTHO05D005591 4.0e-54 214.9 144 73.6
Ciclev10022742m.g Citrus clementina HOM05D004802 ORTHO05D005591 5.2e-54 214.5 145 82.1
PSO782G1633 Papaver somniferum HOM05D004802 ORTHO05D005591 5.2e-54 214.5 148 73.6
CDE01G0824 Ceratophyllum demersum HOM05D004802 ORTHO05D005591 6.8e-54 214.2 145 74.5
Potri.002G185800 Populus trichocarpa HOM05D004802 ORTHO05D005591 8.9e-54 213.8 145 77.2
Thhalv10009035m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 1.2e-53 213.4 145 80.0
SalBow2G1273 Salvia bowleyana HOM05D004802 ORTHO05D005591 1.2e-53 213.4 145 77.9
TWI32G0003 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 2.0e-53 212.6 144 76.4
VMungo1309G2385 Vigna mungo HOM05D004802 ORTHO05D005591 2.0e-53 212.6 144 75.0
arahy.Tifrunner.gnm1.ann1.J5PS4T Arachis hypogaea HOM05D004802 ORTHO05D005591 3.4e-53 211.8 146 74.0
Psat2g170440 Pisum sativum HOM05D004802 ORTHO05D005591 4.4e-53 211.5 144 73.6
arahy.Tifrunner.gnm1.ann1.H02ACK Arachis hypogaea HOM05D004802 ORTHO05D005591 5.8e-53 211.1 146 74.0
COL.COLO4_24762 Corchorus olitorius HOM05D004802 ORTHO05D005591 5.8e-53 211.1 145 82.1
Manes.12G158200 Manihot esculenta HOM05D004802 ORTHO05D005591 5.8e-53 211.1 144 75.0
Hund18328 Selenicereus undatus HOM05D004802 ORTHO05D005591 5.8e-53 211.1 140 77.9
Phvul.009G188900 Phaseolus vulgaris HOM05D004802 ORTHO05D005591 7.5e-53 210.7 144 74.3
TPR.G6374 Trifolium pratense HOM05D004802 ORTHO05D005591 7.5e-53 210.7 144 73.6
Atru.chr9.2421 Acer truncatum HOM05D004802 ORTHO05D005591 9.8e-53 210.3 152 75.0
Aqoxy5G00387 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 9.8e-53 210.3 144 73.6
Aa31LG3G15940 Aethionema arabicum HOM05D004802 ORTHO05D005591 1.3e-52 209.9 146 78.1
C05p05910 Brassica napus HOM05D005594 ORTHO05D006403 1.3e-52 209.9 140 75.0
MBI19_g12136_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 1.3e-52 209.9 144 75.0
AUR62008830 Chenopodium quinoa HOM05D004802 ORTHO05D005591 1.7e-52 209.5 145 75.9
Cc00_g03600 Coffea canephora HOM05D004802 ORTHO05D005591 1.7e-52 209.5 143 80.4
Dinv41117 Davidia involucrata HOM05D001600 ORTHO05D001502 1.7e-52 209.5 131 80.2
Peaxi162Scf00017g02344 Petunia axillaris HOM05D004802 ORTHO05D005591 1.7e-52 209.5 145 79.3
TPR.G20968 Trifolium pratense HOM05D004802 ORTHO05D005591 1.7e-52 209.5 144 72.9
AUR62025410 Chenopodium quinoa HOM05D004802 ORTHO05D005591 3.7e-52 208.4 145 75.9
Thecc.03G006700 Theobroma cacao HOM05D004802 ORTHO05D005591 8.3e-52 207.2 145 80.7
Ah.08g213760 Amaranthus hybridus HOM05D004802 ORTHO05D005591 1.4e-51 206.5 144 72.9
MELO3C017111.2 Cucumis melo HOM05D004802 ORTHO05D005591 1.4e-51 206.5 220 54.5
Duzib068G0850 Durio zibethinus HOM05D004802 ORTHO05D005591 1.4e-51 206.5 148 79.7
MD06G1178500 Malus domestica HOM05D004802 ORTHO05D005591 1.8e-51 206.1 113 88.5
Oeu026523.1 Olea europaea HOM05D004802 ORTHO05D005591 1.8e-51 206.1 145 73.1
Thhalv10014955m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 2.4e-51 205.7 146 76.0
Nitab4.5_0001422g0100 Nicotiana tabacum HOM05D004802 ORTHO05D005591 2.4e-51 205.7 117 86.3
unitig_27.g24928 Utricularia gibba HOM05D004802 ORTHO05D005591 2.4e-51 205.7 144 72.9
Cpa.g.sc170.28 Carica papaya HOM05D004802 ORTHO05D005591 9.2e-51 203.8 133 75.2
EL10Ac7g17734 Beta vulgaris HOM05D004802 ORTHO05D005591 1.2e-50 203.4 144 73.6
HanXRQChr05g0163301 Helianthus annuus HOM05D004802 ORTHO05D005591 1.6e-50 203.0 147 73.5
HanXRQChr05g0163571 Helianthus annuus HOM05D004802 ORTHO05D005591 1.6e-50 203.0 147 73.5
Peaxi162Scf00689g00332 Petunia axillaris HOM05D004802 ORTHO05D005591 1.6e-50 203.0 145 75.2
Aqoxy3G01788 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 2.0e-50 202.6 146 75.3
HPP92_014441 Vanilla planifolia HOM05D004802 ORTHO05D005591 2.7e-50 202.2 144 70.8
Aqoxy3G02494 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 4.6e-50 201.4 145 72.4
FvH4_5g16620 Fragaria vesca HOM05D004802 ORTHO05D005591 7.8e-50 200.7 144 71.5
Ca_06425_v3 Cicer arietinum L. HOM05D000308 ORTHO05D000194 1.0e-49 200.3 145 75.2
ECA246G1319 Erigeron canadensis HOM05D004802 ORTHO05D005591 1.3e-49 199.9 165 63.6
Gohir.A12G276300 Gossypium hirsutum HOM05D004802 ORTHO05D005591 1.3e-49 199.9 147 76.9
Gorai.008G297400 Gossypium raimondii HOM05D004802 ORTHO05D005591 1.3e-49 199.9 147 76.9
FAN18G4009 Fragaria x ananassa HOM05D004802 ORTHO05D005591 2.3e-49 199.1 144 70.8
Medtr5g015850 Medicago truncatula HOM05D004802 ORTHO05D005591 2.3e-49 199.1 144 72.2
SEGI_23384 Sequoiadendron giganteum HOM05D004802 ORTHO05D005591 3.0e-49 198.7 144 71.5
Gohir.D12G276900 Gossypium hirsutum HOM05D004802 ORTHO05D005591 5.0e-49 198.0 147 76.2
Hma1.2p1_2640F.1_g325880 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 5.0e-49 198.0 107 89.7
Manes.15G185900 Manihot esculenta HOM05D004802 ORTHO05D005591 5.0e-49 198.0 146 72.6
arahy.Tifrunner.gnm1.ann1.RYE93B Arachis hypogaea HOM05D004802 ORTHO05D005591 6.6e-49 197.6 170 63.5
FAN13G0264 Fragaria x ananassa HOM05D004802 ORTHO05D005591 1.1e-48 196.8 144 69.4
FAN08G2523 Fragaria x ananassa HOM05D004802 ORTHO05D005591 1.9e-48 196.1 141 71.6
Os06g0128500 Oryza sativa ssp. japonica HOM05D004802 ORTHO05D005591 6.2e-47 191.0 143 73.4
Zm00001eb378540 Zea mays HOM05D004802 ORTHO05D005591 1.4e-46 189.9 143 67.8
Dinv25814 Davidia involucrata HOM05D004802 ORTHO05D005591 3.4e-45 185.3 109 81.7
Rhsim08G0169000 Rhododendron simsii HOM05D004802 ORTHO05D005591 5.8e-45 184.5 175 58.3
Nitab4.5_0008768g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 1.7e-44 183.0 205 56.1
FAN04G1836 Fragaria x ananassa HOM05D004802 ORTHO05D005591 2.9e-44 182.2 113 78.8
Haze_07452 Corylus avellana HOM05D004802 ORTHO05D005591 5.0e-41 171.4 110 78.2
ClCG06G016810 Citrullus lanatus HOM05D004802 ORTHO05D005591 1.5e-40 169.9 92 90.2
CiPaw.11G030400 Carya illinoinensis HOM05D004802 ORTHO05D005591 2.5e-40 169.1 108 79.6
QL10p013461 Quercus lobata HOM05D004802 ORTHO05D005591 4.7e-39 164.9 91 89.0
RcHm_v2.0_Chr3g0484411 Rosa chinensis HOM05D004802 ORTHO05D005591 1.4e-38 163.3 90 87.8
QL03p067058 Quercus lobata HOM05D004802 ORTHO05D005591 3.1e-38 162.2 88 89.8
Cc00_g07690 Coffea canephora HOM05D004802 ORTHO05D005591 5.8e-37 157.9 109 75.2
Nn2g12605 Nelumbo nucifera HOM05D004802 ORTHO05D005591 7.8e-34 147.5 98 78.6
Cc00_g30360 Coffea canephora HOM05D004802 ORTHO05D005591 1.1e-32 143.7 108 75.0
Pp3c17_20320 Physcomitrium patens HOM05D004802 ORTHO05D005591 1.6e-31 139.8 108 61.1
Nitab4.5_0000003g0430 Nicotiana tabacum HOM05D004802 ORTHO05D005591 8.1e-31 137.5 145 61.4
Mapoly0009s0030 Marchantia polymorpha HOM05D004802 ORTHO05D005591 2.4e-30 136.0 108 62.0
CBR_g30055 Chara braunii HOM05D004802 ORTHO05D005591 1.6e-26 123.2 108 59.3
RcHm_v2.0_Chr3g0484341 Rosa chinensis HOM05D004802 ORTHO05D005591 5.6e-24 114.8 63 90.5
Hma1.2p1_0107F.1_g051480 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 2.4e-22 109.4 60 91.7
SMO228G0088 Selaginella moellendorffii HOM05D004802 ORTHO05D005591 1.7e-20 103.2 86 58.1
AagrBONN_evm.TU.Sc2ySwM_368.3252 Anthoceros agrestis HOM05D004802 ORTHO05D005591 3.2e-19 99.0 73 63.0
SHI01132 Sapria himalayana HOM05D004802 ORTHO05D005591 9.3e-19 97.4 89 58.4
A06p04970 Brassica napus HOM05D004802 ORTHO05D005591 1.8e-14 83.2 113 46.0
MCO15G004 Micromonas commoda HOM05D004802 ORTHO05D005591 5.3e-14 81.6 99 45.5
CSS0004783 Camellia sinensis var. sinensis HOM05D004802 ORTHO05D005591 1.2e-13 80.5 59 69.5
Haze_26898 Corylus avellana HOM05D004802 ORTHO05D005591 3.4e-13 79.0 87 44.8
Pp3c14_16960 Physcomitrium patens HOM05D004802 ORTHO05D005591 9.9e-13 77.4 63 60.3
A09p37440 Brassica napus HOM05D004802 ORTHO05D005591 6.0e-10 68.2 48 70.8
Haze_07453 Corylus avellana HOM05D004802 ORTHO05D005591 1.5e-08 63.5 35 85.7
RcHm_v2.0_Chr2g0130991 Rosa chinensis HOM05D004802 ORTHO05D005591 1.5e-08 63.5 67 50.7
A06p04960 Brassica napus HOM05D005594 ORTHO05D006403 1.3e-07 60.5 58 53.4
BcaC02g11004 Brassica carinata HOM05D004802 ORTHO05D005591 6.2e-07 58.2 84 40.5
PRCOL_00002926 Prasinoderma coloniale HOM05D004802 ORTHO05D005591 1.4e-06 57.0 98 39.8
C04p22280 Brassica napus HOM05D004802 ORTHO05D020149 1.8e-06 56.6 43 67.4
Cfa024847 Carpinus fangiana HOM05D004802 ORTHO05D005591 1.8e-06 56.6 72 41.7
BolC3t13075H Brassica oleracea HOM05D004802 ORTHO05D005591 6.9e-06 54.7 29 82.8


User provided reference genes

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