Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0160700 Rhododendron simsii HOM05D007939 ORTHO05D010027 4.7e-49 197.6 102 100.0
CSS0005245 Camellia sinensis var. sinensis HOM05D007939 ORTHO05D010027 4.7e-17 91.3 59 78.0
CSS0025662 Camellia sinensis var. sinensis HOM05D007939 ORTHO05D010027 1.4e-16 89.7 59 76.3
Sabra12G0052700 Salix brachista HOM05D007939 ORTHO05D010027 8.9e-16 87.0 90 51.1
Potri.012G074300 Populus trichocarpa HOM05D007939 ORTHO05D010027 1.5e-15 86.3 45 88.9
Sed0024093 Sechium edule HOM05D007939 ORTHO05D010027 2.0e-15 85.9 45 91.1
ClCG01G014170 Citrullus lanatus HOM05D007939 ORTHO05D010027 2.6e-15 85.5 50 80.0
Nn4g22962 Nelumbo nucifera HOM05D007939 ORTHO05D010027 3.4e-15 85.1 45 86.7
BcaB01g00871 Brassica carinata HOM05D007939 ORTHO05D010027 4.4e-15 84.7 54 75.9
C03p72070 Brassica napus HOM05D007939 ORTHO05D010027 4.4e-15 84.7 54 75.9
BolC3t19505H Brassica oleracea HOM05D007939 ORTHO05D010027 4.4e-15 84.7 54 75.9
BraA06t25058Z Brassica rapa HOM05D007939 ORTHO05D010027 4.4e-15 84.7 54 75.9
CARHR156540 Cardamine hirsuta HOM05D007939 ORTHO05D010027 4.4e-15 84.7 54 77.8
BcaB02g10687 Brassica carinata HOM05D007939 ORTHO05D010027 5.8e-15 84.3 45 86.7
Ciclev10023252m.g Citrus clementina HOM05D007939 ORTHO05D010027 5.8e-15 84.3 45 86.7
MELO3C002231.2 Cucumis melo HOM05D007939 ORTHO05D010027 5.8e-15 84.3 45 88.9
CsaV3_1G008140 Cucumis sativus L. HOM05D007939 ORTHO05D010027 5.8e-15 84.3 45 88.9
Rhsim08G0164200 Rhododendron simsii HOM05D007939 ORTHO05D010027 7.5e-15 84.0 45 86.7
CiPaw.11G033900 Carya illinoinensis HOM05D007939 ORTHO05D010027 9.8e-15 83.6 56 73.2
Thhalv10010893m.g Eutrema salsugineum HOM05D007939 ORTHO05D010027 1.3e-14 83.2 54 74.1
Cfa019042 Carpinus fangiana HOM05D007939 ORTHO05D010027 1.7e-14 82.8 56 73.2
Nn3g17057 Nelumbo nucifera HOM05D007939 ORTHO05D010027 1.7e-14 82.8 45 84.4
Manes.14G071800 Manihot esculenta HOM05D007939 ORTHO05D010027 2.2e-14 82.4 45 84.4
Prupe.5G181400 Prunus persica HOM05D007939 ORTHO05D010027 2.2e-14 82.4 56 71.4
COL.COLO4_05795 Corchorus olitorius HOM05D007939 ORTHO05D010027 3.7e-14 81.6 48 77.1
Haze_07419 Corylus avellana HOM05D007939 ORTHO05D010027 3.7e-14 81.6 45 82.2
BcaC01g01771 Brassica carinata HOM05D007939 ORTHO05D010027 4.9e-14 81.3 45 80.0
Cc04_g16150 Coffea canephora HOM05D007939 ORTHO05D010027 4.9e-14 81.3 54 75.9
Oeu046758.2 Olea europaea HOM05D007939 ORTHO05D010027 4.9e-14 81.3 51 74.5
Sp5g14120 Schrenkiella parvula HOM05D007939 ORTHO05D010027 4.9e-14 81.3 54 72.2
Sabra15G0093500 Salix brachista HOM05D007939 ORTHO05D010027 6.4e-14 80.9 45 82.2
Aa31LG4G16500 Aethionema arabicum HOM05D007939 ORTHO05D010027 8.3e-14 80.5 45 80.0
SGA_v2.0_scaffold7G04104 Striga asiatica HOM05D007939 ORTHO05D010027 8.3e-14 80.5 47 80.9
Thecc.03G001700 Theobroma cacao HOM05D007939 ORTHO05D010027 8.3e-14 80.5 45 82.2
AL5G27140 Arabidopsis lyrata HOM05D007939 ORTHO05D010027 1.1e-13 80.1 54 70.4
Oeu041591.1 Olea europaea HOM05D007939 ORTHO05D010027 1.1e-13 80.1 45 84.4
Lj9A455T57 Lonicera japonica HOM05D007939 ORTHO05D010027 1.4e-13 79.7 45 84.4
Glyma.05G032500 Glycine max HOM05D007939 ORTHO05D010027 3.2e-13 78.6 45 82.2
DCAR_021553 Daucus carota HOM05D007939 ORTHO05D010027 4.1e-13 78.2 45 80.0
Hund02701 Selenicereus undatus HOM05D007939 ORTHO05D010027 4.1e-13 78.2 45 82.2
Solyc03g113670.4 Solanum lycopersicum HOM05D007939 ORTHO05D010027 4.1e-13 78.2 45 77.8
MD14G1189000 Malus domestica HOM05D007939 ORTHO05D010027 5.4e-13 77.8 45 75.6
Nitab4.5_0000642g0220 Nicotiana tabacum HOM05D007939 ORTHO05D010027 7.0e-13 77.4 45 77.8
Solyc06g071260.4 Solanum lycopersicum HOM05D007939 ORTHO05D010027 7.0e-13 77.4 61 62.3
Carub.0005s1396 Capsella rubella HOM05D007939 ORTHO05D010027 1.2e-12 76.6 54 70.4
Gohir.A12G276700 Gossypium hirsutum HOM05D007939 ORTHO05D010027 1.2e-12 76.6 45 77.8
Gohir.D12G277700 Gossypium hirsutum HOM05D007939 ORTHO05D010027 1.2e-12 76.6 45 77.8
Gorai.008G298400 Gossypium raimondii HOM05D007939 ORTHO05D010027 1.2e-12 76.6 45 77.8
C03p66950 Brassica napus HOM05D007939 ORTHO05D010027 1.6e-12 76.3 45 77.8
BolC3t18968H Brassica oleracea HOM05D007939 ORTHO05D010027 1.6e-12 76.3 45 77.8
PGSC0003DMG400033058 Solanum tuberosum HOM05D007939 ORTHO05D010027 1.6e-12 76.3 61 60.7
Lalb_Chr13g0298021 Lupinus albus HOM05D007939 ORTHO05D010027 2.0e-12 75.9 45 77.8
Nitab4.5_0002875g0050 Nicotiana tabacum HOM05D007939 ORTHO05D010027 2.0e-12 75.9 45 75.6
SalBow3G2524 Salvia bowleyana HOM05D007939 ORTHO05D010027 2.0e-12 75.9 44 77.3
Lj4g0008013 Lotus japonicus HOM05D007939 ORTHO05D010027 2.7e-12 75.5 45 75.6
Peaxi162Scf00017g02235 Petunia axillaris HOM05D007939 ORTHO05D010027 3.5e-12 75.1 52 71.2
Phvul.003G196000 Phaseolus vulgaris HOM05D007939 ORTHO05D010027 3.5e-12 75.1 45 77.8
RcHm_v2.0_Chr7g0179931 Rosa chinensis HOM05D007939 ORTHO05D010027 3.5e-12 75.1 44 72.7
Atru.chr9.2381 Acer truncatum HOM05D007939 ORTHO05D010027 4.6e-12 74.7 54 68.5
CAN.G853.35 Capsicum annuum HOM05D007939 ORTHO05D010027 6.0e-12 74.3 52 69.2
HanXRQChr09g0271581 Helianthus annuus HOM05D007939 ORTHO05D010027 6.0e-12 74.3 45 77.8
Nitab4.5_0002101g0080 Nicotiana tabacum HOM05D007939 ORTHO05D010027 6.0e-12 74.3 56 69.6
EL10Ac5g10844 Beta vulgaris HOM05D007939 ORTHO05D010027 1.3e-11 73.2 45 75.6
EL10Ac5g10864 Beta vulgaris HOM05D007939 ORTHO05D010027 1.3e-11 73.2 45 75.6
Lsat_1_v5_gn_4_74421 Lactuca sativa HOM05D007939 ORTHO05D010027 1.3e-11 73.2 52 69.2
CAN.G628.63 Capsicum annuum HOM05D007939 ORTHO05D010027 3.9e-11 71.6 45 80.0
EL10Ac5g11334 Beta vulgaris HOM05D007939 ORTHO05D010027 5.0e-11 71.2 45 73.3
Nitab4.5_0000003g0340 Nicotiana tabacum HOM05D007939 ORTHO05D010027 6.6e-11 70.9 44 79.5
Migut.D01894 Erythranthe guttata HOM05D007939 ORTHO05D010027 1.1e-10 70.1 45 75.6
Medtr4g107140 Medicago truncatula HOM05D007939 ORTHO05D010027 1.5e-10 69.7 45 68.9
PSO591G0029 Papaver somniferum HOM05D007939 ORTHO05D010027 2.5e-10 68.9 42 78.6
ATR0712G037 Amborella trichopoda HOM05D007939 ORTHO05D010027 9.5e-10 67.0 40 80.0
QL10p013938 Quercus lobata HOM05D007939 ORTHO05D010027 1.2e-09 66.6 51 62.7
Zm00001eb302590 Zea mays HOM05D007939 ORTHO05D010027 2.8e-09 65.5 38 81.6
unitig_21.g20455 Utricularia gibba HOM05D002627 ORTHO05D010027 8.0e-09 63.9 45 62.2
Os03g0824500 Oryza sativa ssp. japonica HOM05D007939 ORTHO05D010027 1.1e-08 63.5 35 85.7
Peaxi162Scf00689g00418 Petunia axillaris HOM05D007939 ORTHO05D010027 1.1e-08 63.5 65 50.8
Zm00001eb151290 Zea mays HOM05D007939 ORTHO05D010027 4.0e-08 61.6 39 71.8
Zm00001eb123900 Zea mays HOM05D007939 ORTHO05D010027 6.8e-08 60.8 39 69.2


User provided reference genes

Program Settings