Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0152500 Rhododendron simsii HOM05D004709 ORTHO05D005669 2.0e-74 282.3 142 100.0
Rhsim08G0148900 Rhododendron simsii HOM05D004709 ORTHO05D005669 5.9e-26 121.3 85 74.1
Nn4g23362 Nelumbo nucifera HOM05D004709 ORTHO05D005669 1.1e-24 117.1 85 70.6
CAN.G479.31 Capsicum annuum HOM05D004709 ORTHO05D005669 5.5e-24 114.8 78 74.4
Lsat_1_v5_gn_5_22101 Lactuca sativa HOM05D004709 ORTHO05D005669 5.5e-24 114.8 85 67.1
Sc10g0003220 Simmondsia chinensis HOM05D004709 ORTHO05D005669 9.4e-24 114.0 85 69.4
Solyc03g115490.1 Solanum lycopersicum HOM05D004709 ORTHO05D005669 9.4e-24 114.0 78 73.1
Sopen03g034490 Solanum pennellii HOM05D004709 ORTHO05D005669 9.4e-24 114.0 78 73.1
PGSC0003DMG400024653 Solanum tuberosum HOM05D004709 ORTHO05D005669 9.4e-24 114.0 78 73.1
Actinidia09247 Actinidia chinensis HOM05D004709 ORTHO05D005669 1.2e-23 113.6 74 79.7
Nn3g17388 Nelumbo nucifera HOM05D004709 ORTHO05D005669 1.6e-23 113.2 85 69.4
Prupe.3G258000 Prunus persica HOM05D004709 ORTHO05D005669 1.6e-23 113.2 85 69.4
MD00G1156500 Malus domestica HOM05D004709 ORTHO05D005669 2.7e-23 112.5 85 65.9
HanXRQChr04g0101451 Helianthus annuus HOM05D004709 ORTHO05D005669 4.7e-23 111.7 85 63.5
HanXRQChr05g0157171 Helianthus annuus HOM05D004709 ORTHO05D005669 4.7e-23 111.7 78 71.8
Nitab4.5_0002881g0040 Nicotiana tabacum HOM05D004709 ORTHO05D005669 4.7e-23 111.7 78 71.8
ECA246G5156 Erigeron canadensis HOM05D004709 ORTHO05D005669 6.1e-23 111.3 85 67.1
PSO478G1650 Papaver somniferum HOM05D004709 ORTHO05D005669 6.1e-23 111.3 78 69.2
Lsat_1_v5_gn_1_13721 Lactuca sativa HOM05D004709 ORTHO05D005669 8.0e-23 110.9 85 65.9
MD09G1062400 Malus domestica HOM05D004709 ORTHO05D005669 1.0e-22 110.5 76 72.4
Nitab4.5_0004511g0070 Nicotiana tabacum HOM05D004709 ORTHO05D005669 1.0e-22 110.5 78 70.5
TAR622G0455 Trochodendron aralioides HOM05D004709 ORTHO05D005669 1.8e-22 109.8 82 67.1
ClCG04G011960 Citrullus lanatus HOM05D004709 ORTHO05D005669 2.3e-22 109.4 78 70.5
COL.COLO4_36893 Corchorus olitorius HOM05D004709 ORTHO05D005669 2.3e-22 109.4 84 67.9
Dinv10689 Davidia involucrata HOM05D004709 ORTHO05D005669 2.3e-22 109.4 76 71.1
MBI16_g16369_MAGBIO Magnolia biondii HOM05D004709 ORTHO05D005669 2.3e-22 109.4 84 64.3
QL10p018658 Quercus lobata HOM05D004709 ORTHO05D005669 2.3e-22 109.4 78 71.8
Nn7g35950 Nelumbo nucifera HOM05D004709 ORTHO05D005669 3.0e-22 109.0 76 72.4
RcHm_v2.0_Chr2g0166371 Rosa chinensis HOM05D004709 ORTHO05D005669 5.2e-22 108.2 87 65.5
Actinidia04845 Actinidia chinensis HOM05D004709 ORTHO05D005669 6.8e-22 107.8 68 80.9
CANSAT56G2672 Cannabis sativa HOM05D004709 ORTHO05D005669 6.8e-22 107.8 78 66.7
FvH4_6g47340 Fragaria vesca HOM05D004709 ORTHO05D005669 6.8e-22 107.8 82 65.9
FAN14G4554 Fragaria x ananassa HOM05D004709 ORTHO05D005669 6.8e-22 107.8 82 65.9
ClCG06G015840 Citrullus lanatus HOM05D004709 ORTHO05D005669 1.2e-21 107.1 78 67.9
MELO3C017207.2 Cucumis melo HOM05D004709 ORTHO05D005669 1.2e-21 107.1 78 65.4
Ah.10g032000 Amaranthus hybridus HOM05D004709 ORTHO05D005669 2.0e-21 106.3 78 69.2
COL.COLO4_31014 Corchorus olitorius HOM05D004709 ORTHO05D005669 2.0e-21 106.3 84 66.7
Gohir.A12G180600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 2.0e-21 106.3 84 65.5
Gohir.D12G183300 Gossypium hirsutum HOM05D004709 ORTHO05D005669 2.0e-21 106.3 84 65.5
Thecc.03G097000 Theobroma cacao HOM05D004709 ORTHO05D005669 2.6e-21 105.9 84 65.5
TWI18G0167 Tripterygium wilfordii HOM05D004709 ORTHO05D005669 2.6e-21 105.9 78 66.7
AUR62042435 Chenopodium quinoa HOM05D004709 ORTHO05D005669 3.4e-21 105.5 83 65.1
AUR62018162 Chenopodium quinoa HOM05D004709 ORTHO05D005669 4.4e-21 105.1 81 65.4
Dinv38784 Davidia involucrata HOM05D004709 ORTHO05D005669 4.4e-21 105.1 69 73.9
PGR083G1512 Punica granatum HOM05D004709 ORTHO05D005669 4.4e-21 105.1 82 65.9
Aqoxy3G03572 Aquilegia oxysepala HOM05D004709 ORTHO05D005669 5.7e-21 104.8 78 65.4
Ca_06818_v3 Cicer arietinum L. HOM05D004709 ORTHO05D005669 5.7e-21 104.8 75 69.3
MELO3C002013.2 Cucumis melo HOM05D004709 ORTHO05D005669 5.7e-21 104.8 78 66.7
FAN09G0998 Fragaria x ananassa HOM05D004709 ORTHO05D005669 5.7e-21 104.8 82 64.6
Manes.06G087400 Manihot esculenta HOM05D004709 ORTHO05D005669 5.7e-21 104.8 96 57.3
Medtr0287s0050 Medicago truncatula HOM05D004709 ORTHO05D005669 5.7e-21 104.8 79 65.8
Medtr7g012870 Medicago truncatula HOM05D004709 ORTHO05D005669 5.7e-21 104.8 79 65.8
Eucgr.B00568 Eucalyptus grandis HOM05D004709 ORTHO05D005669 7.5e-21 104.4 84 63.1
Psat3g200920 Pisum sativum HOM05D004709 ORTHO05D005669 7.5e-21 104.4 81 63.0
Potri.009G079800 Populus trichocarpa HOM05D004709 ORTHO05D005669 7.5e-21 104.4 84 63.1
Sed0002201 Sechium edule HOM05D004709 ORTHO05D005669 7.5e-21 104.4 78 66.7
TAR371G0159 Trochodendron aralioides HOM05D004709 ORTHO05D005669 7.5e-21 104.4 82 64.6
SalBow5G3312 Salvia bowleyana HOM05D004709 ORTHO05D005669 9.8e-21 104.0 78 65.4
CiPaw.11G049800 Carya illinoinensis HOM05D004709 ORTHO05D005669 1.3e-20 103.6 84 64.3
FAN05G1711 Fragaria x ananassa HOM05D004709 ORTHO05D005669 1.3e-20 103.6 80 65.0
Lalb_Chr10g0093091 Lupinus albus HOM05D004709 ORTHO05D005669 1.3e-20 103.6 85 62.4
Manes.14G083600 Manihot esculenta HOM05D004709 ORTHO05D005669 1.3e-20 103.6 76 68.4
CsaV3_1G005830 Cucumis sativus L. HOM05D004709 ORTHO05D005669 2.2e-20 102.8 78 65.4
Duzib205G1485 Durio zibethinus HOM05D004709 ORTHO05D005669 2.2e-20 102.8 84 63.1
Gorai.008G196600 Gossypium raimondii HOM05D004709 ORTHO05D005669 2.2e-20 102.8 84 64.3
Aa31LG11G2140 Aethionema arabicum HOM05D004709 ORTHO05D005669 3.7e-20 102.1 76 65.8
Os08g0239000 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 3.7e-20 102.1 78 64.1
Zm00001eb398330 Zea mays HOM05D004709 ORTHO05D005669 3.7e-20 102.1 82 62.2
Cpa.g.sc94.6 Carica papaya HOM05D004709 ORTHO05D005669 4.8e-20 101.7 78 65.4
Cfa019297 Carpinus fangiana HOM05D004709 ORTHO05D005669 4.8e-20 101.7 78 65.4
Sed0019301 Sechium edule HOM05D004709 ORTHO05D005669 4.8e-20 101.7 78 62.8
DCAR_013071 Daucus carota HOM05D000316 ORTHO05D000374 6.3e-20 101.3 80 67.5
FAN02G1874 Fragaria x ananassa HOM05D004709 ORTHO05D005669 6.3e-20 101.3 82 63.4
HanXRQChr17g0545301 Helianthus annuus HOM05D004709 ORTHO05D005669 6.3e-20 101.3 85 61.2
Peaxi162Scf00106g00072 Petunia axillaris HOM05D004709 ORTHO05D005669 6.3e-20 101.3 79 64.6
Sed0023667 Sechium edule HOM05D004709 ORTHO05D005669 6.3e-20 101.3 78 66.7
ATR0064G063 Amborella trichopoda HOM05D004709 ORTHO05D005669 1.1e-19 100.5 78 64.1
Duzib084G0757 Durio zibethinus HOM05D004709 ORTHO05D005669 1.4e-19 100.1 78 66.7
Migut.D01673 Erythranthe guttata HOM05D004709 ORTHO05D005669 1.8e-19 99.8 78 64.1
Prupe.5G200900 Prunus persica HOM05D004709 ORTHO05D005669 1.8e-19 99.8 76 65.8
Ciclev10022528m.g Citrus clementina HOM05D004709 ORTHO05D005669 2.4e-19 99.4 85 55.3
Atru.chr2.2420 Acer truncatum HOM05D004709 ORTHO05D005669 3.1e-19 99.0 82 58.5
AUR62008495 Chenopodium quinoa HOM05D004709 ORTHO05D005669 3.1e-19 99.0 85 57.6
Gohir.A03G069100 Gossypium hirsutum HOM05D004709 ORTHO05D005669 3.1e-19 99.0 78 64.1
Phvul.008G035200 Phaseolus vulgaris HOM05D004709 ORTHO05D005669 5.4e-19 98.2 75 65.3
THA.LOC104801321 Tarenaya hassleriana HOM05D004709 ORTHO05D005669 7.0e-19 97.8 78 62.8
Os10g0406600 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 9.1e-19 97.4 78 61.5
SHI27018 Sapria himalayana HOM05D004709 ORTHO05D005669 1.2e-18 97.1 76 60.5
Gohir.D03G095600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 2.0e-18 96.3 78 62.8
Gorai.003G100300 Gossypium raimondii HOM05D004709 ORTHO05D005669 2.0e-18 96.3 78 62.8
EL10Ac2g03100 Beta vulgaris HOM05D004709 ORTHO05D005669 2.7e-18 95.9 78 57.7
Zm00001eb011200 Zea mays HOM05D004709 ORTHO05D005669 5.9e-18 94.7 82 57.3
MD08G1088600 Malus domestica HOM05D004709 ORTHO05D005669 1.0e-17 94.0 85 57.6
Glyma.08G242600 Glycine max HOM05D004709 ORTHO05D005669 2.3e-17 92.8 73 64.4
GSVIVG01007919001 Vitis vinifera HOM05D004709 ORTHO05D005669 2.3e-17 92.8 66 66.7
Lj1g0000800 Lotus japonicus HOM05D004709 ORTHO05D005669 5.0e-17 91.7 72 63.9
Glyma.18G264800 Glycine max HOM05D004709 ORTHO05D005669 6.5e-17 91.3 82 57.3
Sc04g0003050 Simmondsia chinensis HOM05D004709 ORTHO05D005669 3.3e-16 89.0 76 60.5
Gohir.D12G183150 Gossypium hirsutum HOM05D004709 ORTHO05D005669 2.8e-15 85.9 70 62.9
AL8G37880 Arabidopsis lyrata HOM05D004709 ORTHO05D005669 4.7e-15 85.1 76 55.3
Thhalv10005205m.g Eutrema salsugineum HOM05D004709 ORTHO05D005669 4.7e-15 85.1 76 53.9
Sp2g24450 Schrenkiella parvula HOM05D004709 ORTHO05D005669 4.7e-15 85.1 76 53.9
CARHR274970 Cardamine hirsuta HOM05D004709 ORTHO05D005669 8.0e-15 84.3 76 55.3
A03p46850 Brassica napus HOM05D004709 ORTHO05D005669 1.0e-14 84.0 76 52.6
Carub.0008s2188 Capsella rubella HOM05D004709 ORTHO05D005669 1.0e-14 84.0 76 52.6
AUR62021597 Chenopodium quinoa HOM05D004709 ORTHO05D005669 1.8e-14 83.2 72 59.7
C02p61460 Brassica napus HOM05D004709 ORTHO05D005669 2.3e-14 82.8 76 51.3
BolC2t12197H Brassica oleracea HOM05D004709 ORTHO05D005669 2.3e-14 82.8 76 51.3
BraA02t09093Z Brassica rapa HOM05D004709 ORTHO05D005669 2.3e-14 82.8 76 51.3
BcaC06g33217 Brassica carinata HOM05D004709 ORTHO05D005669 3.0e-14 82.4 76 52.6
A02p41520 Brassica napus HOM05D004709 ORTHO05D005669 3.0e-14 82.4 76 51.3
AT5G61220 Arabidopsis thaliana HOM05D004709 ORTHO05D005669 4.0e-14 82.0 75 54.7
BcaC01g01257 Brassica carinata HOM05D004709 ORTHO05D005669 4.0e-14 82.0 76 51.3
BolC3t21308H Brassica oleracea HOM05D004709 ORTHO05D005669 4.0e-14 82.0 76 51.3
BcaC07g40932 Brassica carinata HOM05D004709 ORTHO05D005669 5.2e-14 81.6 76 50.0
C08p39260 Brassica napus HOM05D004709 ORTHO05D005669 5.2e-14 81.6 76 50.0
C07p44900 Brassica napus HOM05D004709 ORTHO05D005669 1.2e-13 80.5 76 51.3
BolC7t45013H Brassica oleracea HOM05D004709 ORTHO05D005669 1.2e-13 80.5 76 51.3
C03p89860 Brassica napus HOM05D004709 ORTHO05D005669 1.5e-13 80.1 76 51.3
C07p56170 Brassica napus HOM05D004709 ORTHO05D005669 2.0e-13 79.7 76 50.0
BcaC03g18433 Brassica carinata HOM05D004709 ORTHO05D005669 4.4e-13 78.6 76 50.0
C02p63420 Brassica napus HOM05D004709 ORTHO05D005669 4.4e-13 78.6 76 50.0
BolC2t12409H Brassica oleracea HOM05D004709 ORTHO05D005669 4.4e-13 78.6 76 50.0
BraA03t13805Z Brassica rapa HOM05D004709 ORTHO05D005669 5.7e-13 78.2 76 48.7
C06p42660 Brassica napus HOM05D004709 ORTHO05D005669 7.5e-13 77.8 76 50.0
BolC6t39173H Brassica oleracea HOM05D004709 ORTHO05D005669 9.8e-13 77.4 76 48.7
Mapoly0030s0074 Marchantia polymorpha HOM05D004709 ORTHO05D005669 9.8e-13 77.4 84 46.4
Pp3c1_9190 Physcomitrium patens HOM05D004709 ORTHO05D005669 9.8e-13 77.4 82 48.8
A03p02360 Brassica napus HOM05D004709 ORTHO05D005669 1.3e-12 77.0 76 47.4
Atru.chr9.371 Acer truncatum HOM05D004709 ORTHO05D005669 2.2e-12 76.3 76 50.0
CSS0011072 Camellia sinensis var. sinensis HOM05D004709 ORTHO05D005669 2.8e-12 75.9 54 72.2
BcaC06g33172 Brassica carinata HOM05D004709 ORTHO05D005669 3.7e-12 75.5 72 51.4
Medtr7g083770 Medicago truncatula HOM05D004709 ORTHO05D005669 6.3e-12 74.7 65 56.9
Sabra09G0061800 Salix brachista HOM05D004709 ORTHO05D005669 6.3e-12 74.7 53 69.8
CBR_g38475 Chara braunii HOM05D004709 ORTHO05D005669 2.4e-11 72.8 85 44.7
Pp3c9_6850 Physcomitrium patens HOM05D004709 ORTHO05D005669 2.4e-11 72.8 82 45.1
Carub.0006s3376 Capsella rubella HOM05D004709 ORTHO05D005669 3.1e-11 72.4 73 50.7
unitig_37.g12784 Utricularia gibba HOM05D004709 ORTHO05D005669 4.5e-10 68.6 55 67.3
C05p13760 Brassica napus HOM05D004709 ORTHO05D005669 7.8e-10 67.8 67 50.7
BolC5t30114H Brassica oleracea HOM05D004709 ORTHO05D005669 7.8e-10 67.8 67 50.7
BcaC05g25635 Brassica carinata HOM05D004709 ORTHO05D005669 1.0e-09 67.4 67 50.7
BraA07t31299Z Brassica rapa HOM05D004709 ORTHO05D005669 2.9e-09 65.9 67 49.3
PRCOL_00002203 Prasinoderma coloniale HOM05D004709 ORTHO05D005669 1.9e-08 63.2 73 45.2
Cre08.g382850 Chlamydomonas reinhardtii HOM05D004709 ORTHO05D005669 7.3e-08 61.2 75 42.7
SMO174G0212 Selaginella moellendorffii HOM05D004709 ORTHO05D005669 1.6e-07 60.1 74 48.6
CARHR099960 Cardamine hirsuta HOM05D004709 ORTHO05D005669 6.1e-07 58.2 60 46.7
Cfa024147 Carpinus fangiana HOM05D004709 ORTHO05D005669 1.0e-06 57.4 68 44.1
BcaC03g15765 Brassica carinata HOM05D004709 ORTHO05D005669 3.0e-06 55.8 76 46.1
CDE02G0474 Ceratophyllum demersum HOM05D004709 ORTHO05D005669 8.9e-06 54.3 39 69.2


User provided reference genes

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