Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0151700 Rhododendron simsii HOM05D006748 ORTHO05D008553 1.2e-46 189.9 127 100.0
vmacro16507 Vaccinium macrocarpon HOM05D006748 ORTHO05D008553 2.3e-37 159.1 88 89.8
Actinidia35032 Actinidia chinensis HOM05D006748 ORTHO05D008553 3.9e-37 158.3 88 88.6
Actinidia19003 Actinidia chinensis HOM05D006748 ORTHO05D008553 8.7e-37 157.1 88 88.6
CSS0043022 Camellia sinensis var. sinensis HOM05D006748 ORTHO05D008553 2.8e-35 152.1 88 85.2
Hma1.2p1_0060F.1_g033230 Hydrangea macrophylla HOM05D006748 ORTHO05D008553 4.9e-32 141.4 88 79.5
Potri.015G056300 Populus trichocarpa HOM05D006748 ORTHO05D008553 2.4e-31 139.0 86 84.9
Cfa019312 Carpinus fangiana HOM05D006748 ORTHO05D008553 3.2e-31 138.7 88 77.3
Hund02598 Selenicereus undatus HOM05D006748 ORTHO05D008553 4.2e-31 138.3 88 75.0
Haze_07696 Corylus avellana HOM05D006748 ORTHO05D008553 7.1e-31 137.5 88 77.3
CiPaw.12G007800 Carya illinoinensis HOM05D006748 ORTHO05D008553 9.3e-31 137.1 88 79.5
Gohir.A12G181700 Gossypium hirsutum HOM05D006748 ORTHO05D008553 1.2e-30 136.7 88 80.7
Gohir.D12G184500 Gossypium hirsutum HOM05D006748 ORTHO05D008553 1.2e-30 136.7 88 80.7
Gorai.008G197900 Gossypium raimondii HOM05D006748 ORTHO05D008553 1.2e-30 136.7 88 80.7
Hund09880 Selenicereus undatus HOM05D006748 ORTHO05D008553 1.6e-30 136.3 88 77.3
Eucgr.K02517 Eucalyptus grandis HOM05D006748 ORTHO05D008553 2.1e-30 136.0 79 83.5
TAR622G0828 Trochodendron aralioides HOM05D006748 ORTHO05D008553 2.1e-30 136.0 88 75.0
ClCG06G015720 Citrullus lanatus HOM05D006748 ORTHO05D008553 2.7e-30 135.6 77 84.4
Sed0010236 Sechium edule HOM05D006748 ORTHO05D008553 3.5e-30 135.2 77 83.1
Duzib084G0059 Durio zibethinus HOM05D006748 ORTHO05D008553 4.6e-30 134.8 88 78.4
Thecc.03G099400 Theobroma cacao HOM05D006748 ORTHO05D008553 4.6e-30 134.8 88 78.4
Potri.012G065500 Populus trichocarpa HOM05D006748 ORTHO05D008553 6.0e-30 134.4 86 80.2
QL09p026979 Quercus lobata HOM05D006748 ORTHO05D008553 6.0e-30 134.4 88 76.1
CsaV3_1G002810 Cucumis sativus L. HOM05D006748 ORTHO05D008553 7.9e-30 134.0 77 83.1
Dinv10524 Davidia involucrata HOM05D006748 ORTHO05D008553 1.0e-29 133.7 88 76.1
QL10p019141 Quercus lobata HOM05D006748 ORTHO05D008553 1.3e-29 133.3 88 75.0
Nn3g17423 Nelumbo nucifera HOM05D006748 ORTHO05D008553 2.3e-29 132.5 88 72.7
Atru.chr9.414 Acer truncatum HOM05D006748 ORTHO05D008553 3.0e-29 132.1 88 77.3
Ca_18978_v3 Cicer arietinum L. HOM05D006748 ORTHO05D008553 5.1e-29 131.3 88 72.7
Psat5g203080 Pisum sativum HOM05D006748 ORTHO05D008553 5.1e-29 131.3 88 72.7
THA.LOC104818341 Tarenaya hassleriana HOM05D006748 ORTHO05D008553 1.1e-28 130.2 86 75.6
Lj1g0012744 Lotus japonicus HOM05D006748 ORTHO05D008553 1.5e-28 129.8 88 71.6
Manes.06G086100 Manihot esculenta HOM05D006748 ORTHO05D008553 1.5e-28 129.8 86 76.7
TPR.G12215 Trifolium pratense HOM05D006748 ORTHO05D008553 1.5e-28 129.8 88 71.6
Aqoxy3G03609 Aquilegia oxysepala HOM05D006748 ORTHO05D008553 1.9e-28 129.4 88 71.6
Glyma.06G201800 Glycine max HOM05D006748 ORTHO05D008553 1.9e-28 129.4 79 77.2
GSVIVG01007891001 Vitis vinifera HOM05D006748 ORTHO05D008553 1.9e-28 129.4 88 73.9
arahy.Tifrunner.gnm1.ann1.HPW464 Arachis hypogaea HOM05D006748 ORTHO05D008553 2.5e-28 129.0 79 77.2
Manes.14G084550 Manihot esculenta HOM05D006748 ORTHO05D008553 2.5e-28 129.0 86 75.6
Lalb_Chr16g0391551 Lupinus albus HOM05D006748 ORTHO05D008553 3.3e-28 128.6 88 69.3
VMungo1309G2295 Vigna mungo HOM05D006748 ORTHO05D008553 3.3e-28 128.6 90 70.0
AT5G07960 Arabidopsis thaliana HOM05D006748 ORTHO05D008553 4.3e-28 128.3 86 72.1
PSO541G5074 Papaver somniferum HOM05D006748 ORTHO05D008553 4.3e-28 128.3 88 73.9
PSO675G4773 Papaver somniferum HOM05D006748 ORTHO05D008553 4.3e-28 128.3 88 73.9
Phvul.009G193300 Phaseolus vulgaris HOM05D006748 ORTHO05D008553 4.3e-28 128.3 88 70.5
EL10Ac5g11112 Beta vulgaris HOM05D006748 ORTHO05D008553 5.6e-28 127.9 80 80.0
BcaB05g21592 Brassica carinata HOM05D006748 ORTHO05D008553 5.6e-28 127.9 86 73.3
PGR044G1724 Punica granatum HOM05D006748 ORTHO05D008553 5.6e-28 127.9 77 81.8
Sc12g0006600 Simmondsia chinensis HOM05D006748 ORTHO05D008553 9.6e-28 127.1 90 73.3
BcaC03g13204 Brassica carinata HOM05D006748 ORTHO05D008553 1.3e-27 126.7 86 72.1
C02p03380 Brassica napus HOM05D006748 ORTHO05D008553 1.3e-27 126.7 86 72.1
BolC2t06300H Brassica oleracea HOM05D006748 ORTHO05D008553 1.3e-27 126.7 86 72.1
BraA02t04939Z Brassica rapa HOM05D006748 ORTHO05D008553 1.3e-27 126.7 86 72.1
BcaC06g32512 Brassica carinata HOM05D006748 ORTHO05D008553 1.6e-27 126.3 86 72.1
Carub.0006s0686 Capsella rubella HOM05D006748 ORTHO05D008553 1.6e-27 126.3 86 72.1
CARHR205230 Cardamine hirsuta HOM05D006748 ORTHO05D008553 1.6e-27 126.3 86 72.1
Lalb_Chr09g0334301 Lupinus albus HOM05D006748 ORTHO05D008553 1.6e-27 126.3 79 73.4
Medtr3g024170 Medicago truncatula HOM05D006748 ORTHO05D008553 1.6e-27 126.3 88 68.2
Medtr3g024190 Medicago truncatula HOM05D006748 ORTHO05D008553 1.6e-27 126.3 88 68.2
AL6G18300 Arabidopsis lyrata HOM05D006748 ORTHO05D008553 2.1e-27 125.9 86 72.1
Thhalv10015079m.g Eutrema salsugineum HOM05D006748 ORTHO05D008553 2.1e-27 125.9 86 70.9
Sed0016176 Sechium edule HOM05D006748 ORTHO05D008553 2.8e-27 125.6 77 79.2
TWI60G0647 Tripterygium wilfordii HOM05D006748 ORTHO05D008553 2.8e-27 125.6 88 68.2
C09p68960 Brassica napus HOM05D006748 ORTHO05D008553 4.8e-27 124.8 86 70.9
Ciclev10023002m.g Citrus clementina HOM05D006748 ORTHO05D008553 8.2e-27 124.0 88 72.7
Lj5A105G56 Lonicera japonica HOM05D006748 ORTHO05D008553 8.2e-27 124.0 88 69.3
TWI81G0385 Tripterygium wilfordii HOM05D006748 ORTHO05D008553 8.2e-27 124.0 88 68.2
CANSAT80G2841 Cannabis sativa HOM05D006748 ORTHO05D008553 1.1e-26 123.6 88 72.7
Sp6g34980 Schrenkiella parvula HOM05D006748 ORTHO05D008553 1.1e-26 123.6 79 75.9
Cpa.g.sc94.24 Carica papaya HOM05D006748 ORTHO05D008553 1.8e-26 122.9 79 73.4
AUR62008510 Chenopodium quinoa HOM05D006748 ORTHO05D008553 2.4e-26 122.5 80 76.2
Solyc06g069520.3 Solanum lycopersicum HOM05D006748 ORTHO05D008553 2.4e-26 122.5 79 75.9
Sopen06g026810 Solanum pennellii HOM05D006748 ORTHO05D008553 2.4e-26 122.5 79 75.9
FvH4_5g14060 Fragaria vesca HOM05D006748 ORTHO05D008553 3.1e-26 122.1 79 75.9
RcHm_v2.0_Chr7g0182761 Rosa chinensis HOM05D006748 ORTHO05D008553 3.1e-26 122.1 79 73.4
Oeu008258.1 Olea europaea HOM05D006748 ORTHO05D008553 4.0e-26 121.7 79 74.7
AUR62021580 Chenopodium quinoa HOM05D006748 ORTHO05D008553 5.3e-26 121.3 77 79.2
FvH4_5g14160 Fragaria vesca HOM05D006748 ORTHO05D008553 5.3e-26 121.3 79 75.9
FAN13G1579 Fragaria x ananassa HOM05D006748 ORTHO05D008553 5.3e-26 121.3 79 75.9
SGA_v2.0_scaffold25G10944 Striga asiatica HOM05D006748 ORTHO05D008553 9.0e-26 120.6 81 71.6
Aa31LG3G18570 Aethionema arabicum HOM05D006748 ORTHO05D008553 1.2e-25 120.2 86 69.8
MD14G1210100 Malus domestica HOM05D006748 ORTHO05D008553 1.5e-25 119.8 79 74.7
BolC9t59641H Brassica oleracea HOM05D006748 ORTHO05D008553 2.0e-25 119.4 79 74.7
Migut.I00325 Erythranthe guttata HOM05D006748 ORTHO05D008553 2.0e-25 119.4 79 75.9
Sabra15G0081500 Salix brachista HOM05D006748 ORTHO05D008553 2.0e-25 119.4 88 75.0
SHI30118 Sapria himalayana HOM05D006748 ORTHO05D008553 2.0e-25 119.4 71 80.3
HPP92_019473 Vanilla planifolia HOM05D006748 ORTHO05D008553 2.0e-25 119.4 79 69.6
ECA247G1600 Erigeron canadensis HOM05D006748 ORTHO05D008553 3.4e-25 118.6 75 74.7
Lsat_1_v5_gn_1_13560 Lactuca sativa HOM05D006748 ORTHO05D008553 4.5e-25 118.2 75 76.0
MSTRG.22979 Avicennia marina HOM05D006748 ORTHO05D008553 5.8e-25 117.9 79 74.7
Cc10_g05660 Coffea canephora HOM05D006748 ORTHO05D008553 5.8e-25 117.9 88 69.3
HanXRQChr02g0044721 Helianthus annuus HOM05D006748 ORTHO05D008553 5.8e-25 117.9 75 76.0
MD06G1200600 Malus domestica HOM05D006748 ORTHO05D008553 1.0e-24 117.1 79 72.2
SGA_v2.0_scaffold49G18162 Striga asiatica HOM05D006748 ORTHO05D008553 1.3e-24 116.7 79 70.9
Peaxi162Scf00702g00422 Petunia axillaris HOM05D006748 ORTHO05D008553 4.9e-24 114.8 79 72.2
unitig_750.g28509 Utricularia gibba HOM05D006748 ORTHO05D008553 4.9e-24 114.8 79 72.2
Zm00001eb057720 Zea mays HOM05D006748 ORTHO05D008553 4.9e-24 114.8 79 67.1
Nitab4.5_0005160g0020 Nicotiana tabacum HOM05D006748 ORTHO05D008553 8.4e-24 114.0 79 70.9
Nitab4.5_0011867g0020 Nicotiana tabacum HOM05D006748 ORTHO05D008553 8.4e-24 114.0 79 70.9
Os03g0756800 Oryza sativa ssp. japonica HOM05D006748 ORTHO05D008553 7.1e-23 110.9 79 63.3
SMO201G0125 Selaginella moellendorffii HOM05D006748 ORTHO05D008553 6.0e-22 107.8 75 66.7
CDE05G0122 Ceratophyllum demersum HOM05D006748 ORTHO05D008553 2.3e-21 105.9 88 63.6
HPP92_006054 Vanilla planifolia HOM05D006748 ORTHO05D008553 7.4e-20 100.9 73 64.4
ATR0064G062 Amborella trichopoda HOM05D006748 ORTHO05D008553 1.6e-19 99.8 78 60.3
Mapoly0019s0070 Marchantia polymorpha HOM05D006748 ORTHO05D008553 1.6e-19 99.8 74 63.5
HanXRQChr16g0510351 Helianthus annuus HOM05D006748 ORTHO05D008553 1.4e-18 96.7 69 69.6
Pp3c14_26790 Physcomitrium patens HOM05D006748 ORTHO05D008553 5.9e-17 91.3 75 57.3
AagrBONN_evm.TU.Sc2ySwM_117.1931 Anthoceros agrestis HOM05D006748 ORTHO05D008553 7.6e-17 90.9 74 58.1
CBR_g90015 Chara braunii HOM05D006748 ORTHO05D008553 7.6e-17 90.9 74 55.4
COL.COLO4_37587 Corchorus olitorius HOM05D006748 ORTHO05D008553 1.7e-11 73.2 54 74.1
BraA10t44914Z Brassica rapa HOM05D006748 ORTHO05D008553 1.2e-09 67.0 37 81.1
CDE02G4382 Ceratophyllum demersum HOM05D006748 ORTHO05D008553 1.3e-08 63.5 62 53.2
MELO3C017217.2 Cucumis melo HOM05D006748 ORTHO05D008553 1.7e-08 63.2 35 80.0
A10p28650 Brassica napus HOM05D006748 ORTHO05D008553 1.4e-07 60.1 47 59.6
HanXRQChr14g0449601 Helianthus annuus HOM05D006748 ORTHO05D008553 7.2e-07 57.8 33 84.8
SEGI_29622 Sequoiadendron giganteum HOM05D006748 ORTHO05D008553 7.2e-07 57.8 48 58.3


User provided reference genes

Program Settings