Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0144200 Rhododendron simsii HOM05D005271 ORTHO05D006072 8.6e-70 266.9 141 100.0
Rhsim04G0167900 Rhododendron simsii HOM05D005271 ORTHO05D006072 3.4e-50 201.8 138 82.6
vmacro03554 Vaccinium macrocarpon HOM05D005271 ORTHO05D006072 4.3e-45 184.9 137 75.2
CSS0040197 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 1.9e-37 159.5 128 71.1
Actinidia22429 Actinidia chinensis HOM05D005271 ORTHO05D006072 5.7e-37 157.9 128 70.3
Dinv31186 Davidia involucrata HOM05D005271 ORTHO05D006072 6.9e-35 151.0 128 67.2
Cfa001130 Carpinus fangiana HOM05D005271 ORTHO05D006072 5.0e-33 144.8 127 63.8
CiPaw.09G137400 Carya illinoinensis HOM05D005271 ORTHO05D006072 4.2e-32 141.7 131 61.1
Nn7g38328 Nelumbo nucifera HOM05D005271 ORTHO05D006072 1.0e-30 137.1 128 62.5
Duzib151G0973 Durio zibethinus HOM05D005271 ORTHO05D006072 2.3e-30 136.0 126 63.5
Oeu017888.1 Olea europaea HOM05D005271 ORTHO05D006072 2.3e-30 136.0 126 61.1
Ciclev10017270m.g Citrus clementina HOM05D005271 ORTHO05D006072 3.0e-30 135.6 127 61.4
Hma1.2p1_0088F.1_g045170 Hydrangea macrophylla HOM05D005271 ORTHO05D006072 3.9e-30 135.2 128 60.9
Thecc.04G266100 Theobroma cacao HOM05D005271 ORTHO05D006072 8.7e-30 134.0 126 60.3
TAR629G0996 Trochodendron aralioides HOM05D005271 ORTHO05D006072 8.7e-30 134.0 128 59.4
Cpa.g.sc51.137 Carica papaya HOM05D005271 ORTHO05D006072 1.1e-29 133.7 127 62.2
Gohir.A09G226900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 2.5e-29 132.5 126 61.1
QL11p012305 Quercus lobata HOM05D005271 ORTHO05D006072 2.5e-29 132.5 114 64.0
ClCG01G025510 Citrullus lanatus HOM05D005271 ORTHO05D006072 4.3e-29 131.7 126 57.1
Cc10_g11580 Coffea canephora HOM05D005271 ORTHO05D006072 4.3e-29 131.7 128 60.9
Sabra01G0131700 Salix brachista HOM05D005271 ORTHO05D006072 4.3e-29 131.7 127 59.8
Gohir.D09G227900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 5.7e-29 131.3 126 60.3
Gorai.006G250600 Gossypium raimondii HOM05D005271 ORTHO05D006072 5.7e-29 131.3 126 60.3
Duzib212G0597 Durio zibethinus HOM05D005271 ORTHO05D006072 9.7e-29 130.6 126 59.5
Manes.01G042100 Manihot esculenta HOM05D005271 ORTHO05D006072 3.7e-28 128.6 127 57.5
Aqoxy1G00251 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 4.8e-28 128.3 128 58.6
Lj2g0008924 Lotus japonicus HOM05D005271 ORTHO05D006072 6.3e-28 127.9 124 57.3
TWI15G1056 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 6.3e-28 127.9 127 59.8
FAN16G1303 Fragaria x ananassa HOM05D005271 ORTHO05D006072 8.2e-28 127.5 127 57.5
FvH4_3g12930 Fragaria vesca HOM05D005271 ORTHO05D006072 1.1e-27 127.1 127 57.5
FvH4_4g01060 Fragaria vesca HOM05D005271 ORTHO05D006072 1.1e-27 127.1 127 57.5
FAN11G1405 Fragaria x ananassa HOM05D005271 ORTHO05D006072 1.1e-27 127.1 127 57.5
FAN12G2425 Fragaria x ananassa HOM05D005271 ORTHO05D006072 1.1e-27 127.1 127 57.5
PSO782G3340 Papaver somniferum HOM05D005271 ORTHO05D006072 1.4e-27 126.7 130 57.7
Peaxi162Scf00004g02726 Petunia axillaris HOM05D005271 ORTHO05D006072 1.4e-27 126.7 131 55.7
Sed0007631 Sechium edule HOM05D005271 ORTHO05D006072 1.4e-27 126.7 126 54.8
Atru.chr1.851 Acer truncatum HOM05D005271 ORTHO05D006072 1.8e-27 126.3 127 57.5
Manes.05G190800 Manihot esculenta HOM05D005271 ORTHO05D006072 2.4e-27 125.9 127 56.7
Nitab4.5_0004741g0030 Nicotiana tabacum HOM05D005271 ORTHO05D006072 2.4e-27 125.9 129 56.6
Nitab4.5_0002741g0010 Nicotiana tabacum HOM05D005271 ORTHO05D006072 3.1e-27 125.6 128 55.5
GSVIVG01012142001 Vitis vinifera HOM05D005271 ORTHO05D006072 3.1e-27 125.6 114 64.0
FAN21G0135 Fragaria x ananassa HOM05D005271 ORTHO05D006072 4.1e-27 125.2 129 56.6
arahy.Tifrunner.gnm1.ann1.5IT82G Arachis hypogaea HOM05D005271 ORTHO05D006072 5.3e-27 124.8 125 56.0
Phvul.004G017800 Phaseolus vulgaris HOM05D005271 ORTHO05D006072 5.3e-27 124.8 124 54.8
RcHm_v2.0_Chr5g0021041 Rosa chinensis HOM05D005271 ORTHO05D006072 5.3e-27 124.8 127 56.7
arahy.Tifrunner.gnm1.ann1.0KQV7A Arachis hypogaea HOM05D005271 ORTHO05D006072 6.9e-27 124.4 125 56.0
arahy.Tifrunner.gnm1.ann1.31Z3CL Arachis hypogaea HOM05D005271 ORTHO05D006072 6.9e-27 124.4 125 56.0
Medtr6g017185 Medicago truncatula HOM05D005271 ORTHO05D006072 6.9e-27 124.4 125 54.4
Potri.001G160500 Populus trichocarpa HOM05D005271 ORTHO05D006072 6.9e-27 124.4 127 56.7
TWI63G0865 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 9.1e-27 124.0 127 58.3
TAR627G0156 Trochodendron aralioides HOM05D005271 ORTHO05D006072 9.1e-27 124.0 128 57.8
CsaV3_6G052780 Cucumis sativus L. HOM05D005271 ORTHO05D006072 1.2e-26 123.6 126 54.0
arahy.Tifrunner.gnm1.ann1.VX2J7C Arachis hypogaea HOM05D005271 ORTHO05D006072 1.5e-26 123.2 125 55.2
Prupe.4G117300 Prunus persica HOM05D005271 ORTHO05D006072 1.5e-26 123.2 127 57.5
DCAR_002456 Daucus carota HOM05D005271 ORTHO05D006072 2.0e-26 122.9 128 55.5
DCAR_002458 Daucus carota HOM05D005271 ORTHO05D006072 2.0e-26 122.9 128 55.5
Psat0s5346g0120 Pisum sativum HOM05D005271 ORTHO05D006072 2.0e-26 122.9 123 54.5
PGR142G2670 Punica granatum HOM05D005271 ORTHO05D006072 2.0e-26 122.9 127 54.3
MELO3C007032.2 Cucumis melo HOM05D005271 ORTHO05D006072 3.4e-26 122.1 126 53.2
PSO541G1812 Papaver somniferum HOM05D005271 ORTHO05D006072 3.4e-26 122.1 129 55.0
Glyma.19G010500 Glycine max HOM05D005271 ORTHO05D006072 4.5e-26 121.7 125 57.6
VMungo0464G2009 Vigna mungo HOM05D005271 ORTHO05D006072 4.5e-26 121.7 124 54.0
FAN22G0530 Fragaria x ananassa HOM05D005271 ORTHO05D006072 5.9e-26 121.3 127 55.9
CAN.G350.33 Capsicum annuum HOM05D005271 ORTHO05D006072 7.7e-26 120.9 128 53.9
Ca_28197_v3 Cicer arietinum L. HOM05D005271 ORTHO05D006072 7.7e-26 120.9 132 53.8
CANSAT25G1004 Cannabis sativa HOM05D005271 ORTHO05D006072 1.0e-25 120.6 131 55.7
PSO675G0749 Papaver somniferum HOM05D005271 ORTHO05D006072 3.8e-25 118.6 129 52.7
CSS0024418 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 6.5e-25 117.9 77 84.4
Glyma.13G170400 Glycine max HOM05D005271 ORTHO05D006072 6.5e-25 117.9 125 54.4
arahy.Tifrunner.gnm1.ann1.FU3306 Arachis hypogaea HOM05D005271 ORTHO05D006072 8.5e-25 117.5 125 54.4
AL1G15680 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 1.1e-24 117.1 110 59.1
HanXRQChr14g0428301 Helianthus annuus HOM05D005271 ORTHO05D006072 1.4e-24 116.7 136 50.0
EL10Ac1g00803 Beta vulgaris HOM05D005271 ORTHO05D006072 3.2e-24 115.5 122 52.5
Sc10g0007720 Simmondsia chinensis HOM05D005271 ORTHO05D006072 3.2e-24 115.5 119 52.9
Lsat_1_v5_gn_2_4960 Lactuca sativa HOM05D005271 ORTHO05D006072 7.2e-24 114.4 130 49.2
Gohir.A10G107101 Gossypium hirsutum HOM05D005271 ORTHO05D006072 9.4e-24 114.0 122 53.3
SGA_v2.0_scaffold149G36579 Striga asiatica HOM05D005271 ORTHO05D006072 1.2e-23 113.6 127 52.8
Ah.01g016950 Amaranthus hybridus HOM05D005271 ORTHO05D006072 1.6e-23 113.2 116 51.7
AT1G05780 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 2.1e-23 112.8 126 53.2
MSTRG.22460 Avicennia marina HOM05D005271 ORTHO05D006072 2.1e-23 112.8 122 53.3
Cc03_g07280 Coffea canephora HOM05D005271 ORTHO05D006072 3.6e-23 112.1 114 59.6
Migut.N03355 Erythranthe guttata HOM05D005271 ORTHO05D006072 6.1e-23 111.3 127 53.5
Sopen11g025310 Solanum pennellii HOM05D005271 ORTHO05D006072 7.9e-23 110.9 114 56.1
Carub.0004s1300 Capsella rubella HOM05D005271 ORTHO05D006072 1.4e-22 110.2 127 48.0
BraA03t11049Z Brassica rapa HOM05D000364 ORTHO05D006072 1.8e-22 109.8 129 46.5
HanXRQChr06g0184021 Helianthus annuus HOM05D005271 ORTHO05D006072 1.8e-22 109.8 131 52.7
Lalb_Chr02g0160001 Lupinus albus HOM05D005271 ORTHO05D006072 2.3e-22 109.4 124 51.6
Lalb_Chr02g0160211 Lupinus albus HOM05D005271 ORTHO05D006072 2.3e-22 109.4 124 51.6
MD10G1227700 Malus domestica HOM05D005271 ORTHO05D006072 2.3e-22 109.4 115 54.8
Aa31LG5G5280 Aethionema arabicum HOM05D005271 ORTHO05D006072 3.0e-22 109.0 127 48.0
Ah.05g173390 Amaranthus hybridus HOM05D005271 ORTHO05D006072 3.0e-22 109.0 122 50.0
A03p17850 Brassica napus HOM05D000364 ORTHO05D006072 3.0e-22 109.0 129 46.5
AT2G31710 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 3.9e-22 108.6 127 48.0
BcaC01g05934 Brassica carinata HOM05D000364 ORTHO05D006072 3.9e-22 108.6 129 46.5
C03p20920 Brassica napus HOM05D000364 ORTHO05D006072 3.9e-22 108.6 129 46.5
BraA04t17934Z Brassica rapa HOM05D005271 ORTHO05D006072 3.9e-22 108.6 127 48.0
Migut.C01265 Erythranthe guttata HOM05D005271 ORTHO05D006072 3.9e-22 108.6 128 53.9
SalBow1G3231 Salvia bowleyana HOM05D005271 ORTHO05D006072 3.9e-22 108.6 126 52.4
MD05G1247100 Malus domestica HOM05D005271 ORTHO05D006072 5.1e-22 108.2 113 56.6
BcaB06g28531 Brassica carinata HOM05D005271 ORTHO05D006072 6.7e-22 107.8 127 48.0
C04p60870 Brassica napus HOM05D005271 ORTHO05D006072 6.7e-22 107.8 127 48.0
BolC4t27578H Brassica oleracea HOM05D005271 ORTHO05D006072 6.7e-22 107.8 127 48.0
CARHR125350 Cardamine hirsuta HOM05D005271 ORTHO05D006072 6.7e-22 107.8 127 49.6
Thhalv10017819m.g Eutrema salsugineum HOM05D005271 ORTHO05D006072 6.7e-22 107.8 127 48.0
THA.LOC104815870 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 6.7e-22 107.8 127 48.0
ECA238G4336 Erigeron canadensis HOM05D005271 ORTHO05D006072 8.8e-22 107.5 128 48.4
SalBow6G1192 Salvia bowleyana HOM05D005271 ORTHO05D006072 8.8e-22 107.5 126 51.6
AL4G26950 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 1.1e-21 107.1 127 48.0
PSO170G3626 Papaver somniferum HOM05D005271 ORTHO05D006072 1.1e-21 107.1 130 51.5
THA.LOC104800917 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 1.5e-21 106.7 127 49.6
Haze_05264 Corylus avellana HOM05D005271 ORTHO05D006072 2.6e-21 105.9 76 73.7
CARHR005290 Cardamine hirsuta HOM05D005271 ORTHO05D006072 3.3e-21 105.5 126 46.8
Oeu021212.1 Olea europaea HOM05D005271 ORTHO05D006072 3.3e-21 105.5 127 52.0
A04p24140 Brassica napus HOM05D005271 ORTHO05D006072 4.4e-21 105.1 127 46.5
BcaB01g04025 Brassica carinata HOM05D005271 ORTHO05D006072 7.4e-21 104.4 125 46.4
CDE05G0701 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 3.7e-20 102.1 128 50.0
CDE05G1696 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 4.8e-20 101.7 125 51.2
HPP92_012976 Vanilla planifolia HOM05D005271 ORTHO05D006072 8.2e-20 100.9 129 48.8
ATR1120G033 Amborella trichopoda HOM05D005271 ORTHO05D006072 1.1e-19 100.5 130 49.2
SGA_v2.0_scaffold118G32500 Striga asiatica HOM05D005271 ORTHO05D006072 1.4e-19 100.1 126 50.0
SalBow7G2991 Salvia bowleyana HOM05D005271 ORTHO05D006072 3.1e-19 99.0 121 52.1
AUR62023913 Chenopodium quinoa HOM05D005271 ORTHO05D006072 4.1e-19 98.6 111 52.3
AUR62038333 Chenopodium quinoa HOM05D005271 ORTHO05D006072 2.0e-18 96.3 113 47.8
C04p18180 Brassica napus HOM05D005271 ORTHO05D006072 3.4e-18 95.5 126 45.2
BolC4t23374H Brassica oleracea HOM05D005271 ORTHO05D006072 3.4e-18 95.5 126 45.2
A05p13810 Brassica napus HOM05D005271 ORTHO05D006072 5.9e-18 94.7 123 45.5
Os04g0612900 Oryza sativa ssp. japonica HOM05D005271 ORTHO05D006072 1.3e-17 93.6 129 47.3
MBI02_g01139_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 2.9e-17 92.4 96 59.4
BcaB02g10411 Brassica carinata HOM05D000896 ORTHO05D006072 3.8e-17 92.0 130 44.6
BcaC02g11279 Brassica carinata HOM05D005271 ORTHO05D006072 6.5e-17 91.3 126 43.7
unitig_0.g914 Utricularia gibba HOM05D000362 ORTHO05D000325 1.4e-16 90.1 129 42.6
Eucgr.H02355 Eucalyptus grandis HOM05D005271 ORTHO05D006072 2.5e-16 89.4 92 53.3
Hund17073 Selenicereus undatus HOM05D005271 ORTHO05D006072 9.4e-16 87.4 65 73.8
EL10Ac9g21107 Beta vulgaris HOM05D005271 ORTHO05D006072 1.6e-15 86.7 62 71.0
COL.COLO4_15978 Corchorus olitorius HOM05D005271 ORTHO05D006072 2.7e-15 85.9 75 64.0
Zm00001eb071020 Zea mays HOM05D005271 ORTHO05D006072 2.7e-15 85.9 125 45.6
Hund00748 Selenicereus undatus HOM05D005271 ORTHO05D006072 6.1e-15 84.7 63 65.1
PGSC0003DMG400010917 Solanum tuberosum HOM05D005271 ORTHO05D006072 5.2e-14 81.6 73 61.6
MBI14_g01725_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 2.8e-12 75.9 74 63.5
AUR62004132 Chenopodium quinoa HOM05D005271 ORTHO05D006072 3.7e-12 75.5 57 71.9
Aqoxy3G03156 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 9.1e-11 70.9 66 66.7
Pp3c12_11530 Physcomitrium patens HOM05D005271 ORTHO05D006072 1.6e-10 70.1 120 37.5
SMO300G0007 Selaginella moellendorffii HOM05D005271 ORTHO05D006072 1.3e-09 67.0 104 41.3
Mapoly0098s0021 Marchantia polymorpha HOM05D005271 ORTHO05D006072 5.5e-08 61.6 131 33.6
Zm00001eb430740 Zea mays HOM05D005271 ORTHO05D006072 7.2e-08 61.2 72 52.8
Cfa013238 Carpinus fangiana HOM05D005271 ORTHO05D006072 6.1e-07 58.2 40 70.0
CBR_g30301 Chara braunii HOM05D005271 ORTHO05D006072 5.2e-06 55.1 95 40.0


User provided reference genes

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