Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0141900 Rhododendron simsii HOM05D000289 ORTHO05D000208 4.9e-41 170.6 82 100.0
Rhsim12G0141800 Rhododendron simsii HOM05D000289 ORTHO05D000208 1.4e-24 115.9 56 100.0
RhsimUnG0075500 Rhododendron simsii HOM05D000289 ORTHO05D000208 1.4e-24 115.9 56 100.0
vmacro16435 Vaccinium macrocarpon HOM05D000289 ORTHO05D000208 1.9e-16 89.0 56 66.1
Actinidia35099 Actinidia chinensis HOM05D000289 ORTHO05D000208 8.7e-14 80.1 56 62.5
Actinidia18919 Actinidia chinensis HOM05D000289 ORTHO05D000208 5.7e-13 77.4 56 60.7
CSS0014742 Camellia sinensis var. sinensis HOM05D000289 ORTHO05D000208 1.3e-12 76.3 56 64.3
CSS0000129 Camellia sinensis var. sinensis HOM05D000289 ORTHO05D000208 6.2e-12 73.9 56 57.1
PGR044G2020 Punica granatum HOM05D000289 ORTHO05D000208 4.0e-11 71.2 55 56.4
CSS0002853 Camellia sinensis var. sinensis HOM05D000289 ORTHO05D000208 6.9e-11 70.5 55 56.4
Sopen03g038080 Solanum pennellii HOM05D000289 ORTHO05D000208 1.3e-09 66.2 52 55.8
Eucgr.K02235 Eucalyptus grandis HOM05D000289 ORTHO05D000208 2.2e-09 65.5 54 53.7
Cc04_g06870 Coffea canephora HOM05D000289 ORTHO05D000208 2.9e-09 65.1 53 52.8
Solyc03g119190.3 Solanum lycopersicum HOM05D000289 ORTHO05D000208 2.9e-09 65.1 52 53.8
Aqoxy3G00201 Aquilegia oxysepala HOM05D000289 ORTHO05D000208 3.8e-09 64.7 55 56.4
Migut.E01767 Erythranthe guttata HOM05D000289 ORTHO05D000208 3.8e-09 64.7 64 43.8
Hma1.2p1_1283F.1_g272770 Hydrangea macrophylla HOM05D000289 ORTHO05D000208 3.8e-09 64.7 49 57.1
CANSAT80G2699 Cannabis sativa HOM05D000289 ORTHO05D000208 5.0e-09 64.3 55 50.9
Dinv16135 Davidia involucrata HOM05D000289 ORTHO05D000208 6.5e-09 63.9 52 57.7
Haze_18726 Corylus avellana HOM05D000289 ORTHO05D000208 8.4e-09 63.5 52 51.9
FAN04G2994 Fragaria x ananassa HOM05D000289 ORTHO05D000208 1.1e-08 63.2 55 50.9
FAN08G0138 Fragaria x ananassa HOM05D000289 ORTHO05D000208 1.1e-08 63.2 55 50.9
FAN13G2389 Fragaria x ananassa HOM05D000289 ORTHO05D000208 1.1e-08 63.2 55 50.9
MD06G1220200 Malus domestica HOM05D000289 ORTHO05D000208 1.1e-08 63.2 55 50.9
Cfa019735 Carpinus fangiana HOM05D000289 ORTHO05D000208 1.4e-08 62.8 52 51.9
RcHm_v2.0_Chr7g0179441 Rosa chinensis HOM05D000289 ORTHO05D000208 1.4e-08 62.8 55 49.1
MSTRG.2217 Avicennia marina HOM05D000289 ORTHO05D000208 1.9e-08 62.4 53 54.7
CDE02G3806 Ceratophyllum demersum HOM05D000289 ORTHO05D000208 1.9e-08 62.4 55 50.9
DCAR_007263 Daucus carota HOM05D000289 ORTHO05D000208 1.9e-08 62.4 55 58.2
FvH4_5g16680 Fragaria vesca HOM05D000289 ORTHO05D000208 2.5e-08 62.0 55 49.1
FAN18G2068 Fragaria x ananassa HOM05D000289 ORTHO05D000208 2.5e-08 62.0 55 49.1
SalBow8G2753 Salvia bowleyana HOM05D000289 ORTHO05D000208 2.5e-08 62.0 53 52.8
Lj9C425T9 Lonicera japonica HOM05D000289 ORTHO05D000208 3.2e-08 61.6 52 53.8
Potri.015G044300 Populus trichocarpa HOM05D000289 ORTHO05D000208 3.2e-08 61.6 57 49.1
QL10p026491 Quercus lobata HOM05D000289 ORTHO05D000208 4.2e-08 61.2 54 50.0
Peaxi162Scf00179g00539 Petunia axillaris HOM05D000289 ORTHO05D000208 5.5e-08 60.8 53 52.8
ClCG04G010930 Citrullus lanatus HOM05D000289 ORTHO05D000208 7.1e-08 60.5 55 50.9
MELO3C002107.2 Cucumis melo HOM05D000289 ORTHO05D000208 7.1e-08 60.5 55 50.9
CsaV3_1G006910 Cucumis sativus L. HOM05D000289 ORTHO05D000208 7.1e-08 60.5 55 52.7
Gohir.A07G066900 Gossypium hirsutum HOM05D000289 ORTHO05D000208 7.1e-08 60.5 53 52.8
Peaxi162Scf00683g00152 Petunia axillaris HOM05D000289 ORTHO05D000208 7.1e-08 60.5 55 50.9
Duzib084G1222 Durio zibethinus HOM05D000289 ORTHO05D000208 9.3e-08 60.1 52 53.8
Duzib205G1931 Durio zibethinus HOM05D000289 ORTHO05D000208 9.3e-08 60.1 52 53.8
Lsat_1_v5_gn_8_41400 Lactuca sativa HOM05D000289 ORTHO05D000208 9.3e-08 60.1 57 52.6
Nitab4.5_0017493g0010 Nicotiana tabacum HOM05D000289 ORTHO05D000208 1.2e-07 59.7 53 50.9
Sopen05g004640 Solanum pennellii HOM05D000289 ORTHO05D000208 1.2e-07 59.7 53 52.8
MSTRG.13553 Avicennia marina HOM05D000289 ORTHO05D000208 1.6e-07 59.3 53 52.8
CAN.G610.25 Capsicum annuum HOM05D000289 ORTHO05D000208 1.6e-07 59.3 53 52.8
Lj3A880T117 Lonicera japonica HOM05D000289 ORTHO05D000208 1.6e-07 59.3 55 54.5
TAR622G0664 Trochodendron aralioides HOM05D000289 ORTHO05D000208 1.6e-07 59.3 55 52.7
TAR622G0899 Trochodendron aralioides HOM05D000289 ORTHO05D000208 1.6e-07 59.3 55 52.7
Ciclev10022074m.g Citrus clementina HOM05D000289 ORTHO05D000208 2.1e-07 58.9 49 46.9
Haze_00651 Corylus avellana HOM05D000289 ORTHO05D000208 2.1e-07 58.9 52 50.0
Gorai.001G075400 Gossypium raimondii HOM05D000289 ORTHO05D000208 2.1e-07 58.9 53 50.9
MBI09_g25157_MAGBIO Magnolia biondii HOM05D000289 ORTHO05D000208 2.1e-07 58.9 55 52.7
Nitab4.5_0000057g0060 Nicotiana tabacum HOM05D000289 ORTHO05D000208 2.1e-07 58.9 53 49.1
Solyc05g008890.3 Solanum lycopersicum HOM05D000289 ORTHO05D000208 2.1e-07 58.9 53 50.9
COL.COLO4_20840 Corchorus olitorius HOM05D000289 ORTHO05D000208 2.7e-07 58.5 52 55.8
PSO017G0551 Papaver somniferum HOM05D000289 ORTHO05D000208 2.7e-07 58.5 52 48.1
PSO478G4757 Papaver somniferum HOM05D000289 ORTHO05D000208 2.7e-07 58.5 52 48.1
PGSC0003DMG400030573 Solanum tuberosum HOM05D000289 ORTHO05D000208 2.7e-07 58.5 53 52.8
GSVIVG01011845001 Vitis vinifera HOM05D000289 ORTHO05D000208 2.7e-07 58.5 55 52.7
ECA234G1425 Erigeron canadensis HOM05D000289 ORTHO05D000208 3.5e-07 58.2 57 47.4
MD14G1229700 Malus domestica HOM05D000289 ORTHO05D000208 3.5e-07 58.2 55 47.3
Sabra15G0040800 Salix brachista HOM05D000289 ORTHO05D000208 3.5e-07 58.2 57 43.9
Thecc.03G040800 Theobroma cacao HOM05D000289 ORTHO05D000208 3.5e-07 58.2 52 51.9
Cfa015839 Carpinus fangiana HOM05D000289 ORTHO05D000208 4.6e-07 57.8 55 47.3
Gohir.D07G071500 Gossypium hirsutum HOM05D000289 ORTHO05D000208 4.6e-07 57.8 53 50.9
HanXRQChr17g0567191 Helianthus annuus HOM05D000289 ORTHO05D000208 4.6e-07 57.8 57 47.4
Os05g0550250 Oryza sativa ssp. japonica HOM05D000289 ORTHO05D000208 4.6e-07 57.8 51 54.9
Prupe.5G224500 Prunus persica HOM05D000289 ORTHO05D000208 4.6e-07 57.8 51 47.1
HPP92_003919 Vanilla planifolia HOM05D000289 ORTHO05D000208 4.6e-07 57.8 55 49.1
TAR374G1127 Trochodendron aralioides HOM05D000289 ORTHO05D000208 6.1e-07 57.4 52 51.9
TAR374G1443 Trochodendron aralioides HOM05D000289 ORTHO05D000208 6.1e-07 57.4 52 51.9
Zm00001eb360670 Zea mays HOM05D000289 ORTHO05D000208 6.1e-07 57.4 51 54.9
DCAR_023219 Daucus carota HOM05D000289 ORTHO05D000208 7.9e-07 57.0 52 50.0
Lalb_Chr14g0370971 Lupinus albus HOM05D000289 ORTHO05D000208 7.9e-07 57.0 52 48.1
Oeu017511.1 Olea europaea HOM05D000289 ORTHO05D000208 7.9e-07 57.0 52 53.8
QL01p010836 Quercus lobata HOM05D000289 ORTHO05D000208 7.9e-07 57.0 54 48.1
QL93p0145_0005 Quercus lobata HOM05D000289 ORTHO05D000208 7.9e-07 57.0 54 48.1
Sed0027643 Sechium edule HOM05D000289 ORTHO05D000208 7.9e-07 57.0 55 49.1
arahy.Tifrunner.gnm1.ann1.122XK3 Arachis hypogaea HOM05D000289 ORTHO05D000208 1.0e-06 56.6 53 49.1
Lsat_1_v5_gn_4_14841 Lactuca sativa HOM05D000289 ORTHO05D000208 1.0e-06 56.6 57 49.1
Potri.012G054100 Populus trichocarpa HOM05D000289 ORTHO05D000208 1.0e-06 56.6 58 48.3
Hund25037 Selenicereus undatus HOM05D000289 ORTHO05D000208 1.0e-06 56.6 52 50.0
Zm00001eb294860 Zea mays HOM05D000289 ORTHO05D000208 1.0e-06 56.6 51 51.0
Atru.chr9.902 Acer truncatum HOM05D000289 ORTHO05D000208 1.3e-06 56.2 53 45.3
Eucgr.G02239 Eucalyptus grandis HOM05D000289 ORTHO05D000208 1.3e-06 56.2 47 51.1
Eucgr.G02275 Eucalyptus grandis HOM05D000289 ORTHO05D000208 1.3e-06 56.2 47 51.1
Glyma.07G097100 Glycine max HOM05D000289 ORTHO05D000208 1.3e-06 56.2 55 45.5
Lj6C753T16 Lonicera japonica HOM05D000289 ORTHO05D000208 1.3e-06 56.2 55 50.9
Lj4g0019956 Lotus japonicus HOM05D000289 ORTHO05D000208 1.3e-06 56.2 52 48.1
arahy.Tifrunner.gnm1.ann1.FJYR5C Arachis hypogaea HOM05D000289 ORTHO05D000208 1.8e-06 55.8 53 49.1
Lj2g0022002 Lotus japonicus HOM05D000289 ORTHO05D000208 1.8e-06 55.8 55 43.6
Lalb_Chr10g0096411 Lupinus albus HOM05D000289 ORTHO05D000208 1.8e-06 55.8 55 45.5
Medtr1g109630 Medicago truncatula HOM05D000289 ORTHO05D000208 1.8e-06 55.8 55 47.3
Oeu014297.1 Olea europaea HOM05D000289 ORTHO05D000208 1.8e-06 55.8 53 50.9
Os01g0691400 Oryza sativa ssp. japonica HOM05D000289 ORTHO05D000208 1.8e-06 55.8 51 51.0
Phvul.004G154000 Phaseolus vulgaris HOM05D000289 ORTHO05D000208 1.8e-06 55.8 55 47.3
SGA_v2.0_scaffold38G15001 Striga asiatica HOM05D000289 ORTHO05D000208 1.8e-06 55.8 51 49.0
Nn4g23951 Nelumbo nucifera HOM05D000289 ORTHO05D000208 2.3e-06 55.5 55 47.3
Nitab4.5_0001986g0040 Nicotiana tabacum HOM05D000289 ORTHO05D000208 2.3e-06 55.5 55 45.5
Psat6g224560 Pisum sativum HOM05D000289 ORTHO05D000208 2.3e-06 55.5 55 45.5
TPR.G4905 Trifolium pratense HOM05D000289 ORTHO05D000208 2.3e-06 55.5 55 47.3
CDE08G0817 Ceratophyllum demersum HOM05D000289 ORTHO05D000208 3.0e-06 55.1 53 45.3
Cc11_g09690 Coffea canephora HOM05D000289 ORTHO05D000208 3.0e-06 55.1 52 51.9
Glyma.09G180800 Glycine max HOM05D000289 ORTHO05D000208 3.0e-06 55.1 55 45.5
Sabra12G0037900 Salix brachista HOM05D000289 ORTHO05D000208 3.0e-06 55.1 57 43.9
arahy.Tifrunner.gnm1.ann1.T57S6S Arachis hypogaea HOM05D000289 ORTHO05D000208 3.9e-06 54.7 52 48.1
CiPaw.05G241600 Carya illinoinensis HOM05D000289 ORTHO05D000208 3.9e-06 54.7 52 46.2
Dinv17503 Davidia involucrata HOM05D000289 ORTHO05D000208 3.9e-06 54.7 52 50.0
Cpa.g.sc3.465 Carica papaya HOM05D000289 ORTHO05D000208 5.1e-06 54.3 50 50.0
Migut.L01026 Erythranthe guttata HOM05D000289 ORTHO05D000208 5.1e-06 54.3 53 49.1
Lalb_Chr21g0308751 Lupinus albus HOM05D000289 ORTHO05D000208 5.1e-06 54.3 55 49.1
PGR031G1476 Punica granatum HOM05D000289 ORTHO05D000208 5.1e-06 54.3 52 46.2
Hund30500 Selenicereus undatus HOM05D000289 ORTHO05D000208 5.1e-06 54.3 52 48.1
arahy.Tifrunner.gnm1.ann1.6R0JBG Arachis hypogaea HOM05D000289 ORTHO05D000208 6.7e-06 53.9 52 46.2
BcaC01g03704 Brassica carinata HOM05D000289 ORTHO05D000208 6.7e-06 53.9 52 44.2
A03p40590 Brassica napus HOM05D000289 ORTHO05D000208 6.7e-06 53.9 52 44.2
C03p49400 Brassica napus HOM05D000289 ORTHO05D000208 6.7e-06 53.9 52 44.2
BraA03t13216Z Brassica rapa HOM05D000289 ORTHO05D000208 6.7e-06 53.9 52 44.2
Ca_06887_v3 Cicer arietinum L. HOM05D000289 ORTHO05D000208 6.7e-06 53.9 55 43.6
Nitab4.5_0004028g0080 Nicotiana tabacum HOM05D000289 ORTHO05D000208 6.7e-06 53.9 55 43.6


User provided reference genes

Program Settings