Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0138600 Rhododendron simsii HOM05D006032 ORTHO05D007544 1.2e-58 229.6 113 100.0
Rhsim12G0138500 Rhododendron simsii HOM05D006032 ORTHO05D007544 2.1e-42 175.6 87 98.9
Rhsim01G0165400 Rhododendron simsii HOM05D006032 ORTHO05D007544 6.8e-41 170.6 87 95.4
vmacro20901 Vaccinium macrocarpon HOM05D006032 ORTHO05D007544 1.7e-31 139.4 87 78.2
CSS0027447 Camellia sinensis var. sinensis HOM05D006032 ORTHO05D007544 4.9e-23 111.3 88 65.9
Prupe.2G175800 Prunus persica HOM05D006032 ORTHO05D007544 1.3e-20 103.2 84 65.5
COL.COLO4_12764 Corchorus olitorius HOM05D006032 ORTHO05D007544 1.7e-20 102.8 86 66.3
Atru.chr5.551 Acer truncatum HOM05D006032 ORTHO05D007544 5.0e-20 101.3 84 63.1
Thecc.01G353900 Theobroma cacao HOM05D006032 ORTHO05D007544 5.0e-20 101.3 85 67.1
GSVIVG01027006001 Vitis vinifera HOM05D006032 ORTHO05D007544 1.1e-19 100.1 86 61.6
SalBow3G2277 Salvia bowleyana HOM05D006032 ORTHO05D007544 1.9e-19 99.4 88 63.6
MD01G1069800 Malus domestica HOM05D006032 ORTHO05D007544 4.3e-19 98.2 83 63.9
PGSC0003DMG400001748 Solanum tuberosum HOM05D006032 ORTHO05D007544 7.3e-19 97.4 87 63.2
Gohir.A07G140700 Gossypium hirsutum HOM05D006032 ORTHO05D007544 9.5e-19 97.1 87 60.9
Gohir.D07G146100 Gossypium hirsutum HOM05D006032 ORTHO05D007544 9.5e-19 97.1 87 60.9
Gorai.001G158300 Gossypium raimondii HOM05D006032 ORTHO05D007544 9.5e-19 97.1 87 60.9
Hma1.2p1_2961F.1_g330870 Hydrangea macrophylla HOM05D006032 ORTHO05D007544 1.6e-18 96.3 87 62.1
PGR031G1164 Punica granatum HOM05D006032 ORTHO05D007544 1.6e-18 96.3 83 62.7
Manes.01G253200 Manihot esculenta HOM05D006032 ORTHO05D007544 6.2e-18 94.4 86 58.1
Solyc09g007560.4 Solanum lycopersicum HOM05D006032 ORTHO05D007544 8.0e-18 94.0 88 61.4
Sopen09g002430 Solanum pennellii HOM05D006032 ORTHO05D007544 8.0e-18 94.0 88 61.4
Ciclev10021696m.g Citrus clementina HOM05D006032 ORTHO05D007544 4.0e-17 91.7 85 58.8
Cc02_g38440 Coffea canephora HOM05D006032 ORTHO05D007544 4.0e-17 91.7 90 63.3
Lj7A509T108 Lonicera japonica HOM05D006032 ORTHO05D007544 1.2e-16 90.1 87 56.3
TWI59G0434 Tripterygium wilfordii HOM05D006032 ORTHO05D007544 2.0e-16 89.4 86 58.1
Nitab4.5_0002682g0080 Nicotiana tabacum HOM05D006032 ORTHO05D007544 4.4e-16 88.2 92 56.5
THA.LOC104817034 Tarenaya hassleriana HOM05D006032 ORTHO05D007544 5.8e-16 87.8 87 54.0
CANSAT56G0440 Cannabis sativa HOM05D006032 ORTHO05D007544 7.5e-16 87.4 87 60.9
Migut.B01790 Erythranthe guttata HOM05D006032 ORTHO05D007544 9.8e-16 87.0 89 61.8
RcHm_v2.0_Chr1g0357301 Rosa chinensis HOM05D006032 ORTHO05D007544 9.8e-16 87.0 83 60.2
SGA_v2.0_scaffold95G28814 Striga asiatica HOM05D006032 ORTHO05D007544 9.8e-16 87.0 88 58.0
Nitab4.5_0006802g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 1.3e-15 86.7 92 55.4
FvH4_7g15110 Fragaria vesca HOM05D006032 ORTHO05D007544 1.7e-15 86.3 83 59.0
FAN06G2046 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.7e-15 86.3 83 59.0
FAN06G3864 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.7e-15 86.3 83 59.0
Dinv32511 Davidia involucrata HOM05D006032 ORTHO05D007544 2.2e-15 85.9 65 69.2
Lsat_1_v5_gn_7_3801 Lactuca sativa HOM05D006032 ORTHO05D007544 2.2e-15 85.9 87 58.6
HanXRQChr06g0170291 Helianthus annuus HOM05D006032 ORTHO05D007544 2.9e-15 85.5 87 58.6
MD07G1132700 Malus domestica HOM05D006032 ORTHO05D007544 2.9e-15 85.5 83 57.8
Cpa.g.sc184.23 Carica papaya HOM05D006032 ORTHO05D007544 3.7e-15 85.1 89 58.4
Medtr7g078800 Medicago truncatula HOM05D006032 ORTHO05D007544 3.7e-15 85.1 87 51.7
Psat3g107160 Pisum sativum HOM05D006032 ORTHO05D007544 3.7e-15 85.1 91 54.9
MSTRG.20857 Avicennia marina HOM05D006032 ORTHO05D007544 4.9e-15 84.7 89 57.3
FAN01G2970 Fragaria x ananassa HOM05D006032 ORTHO05D007544 4.9e-15 84.7 85 58.8
FAN10G0977 Fragaria x ananassa HOM05D006032 ORTHO05D007544 4.9e-15 84.7 85 60.0
FAN10G2244 Fragaria x ananassa HOM05D006032 ORTHO05D007544 4.9e-15 84.7 85 60.0
Haze_15552 Corylus avellana HOM05D006032 ORTHO05D007544 6.4e-15 84.3 86 57.0
FAN03G1341 Fragaria x ananassa HOM05D006032 ORTHO05D007544 6.4e-15 84.3 83 57.8
ECA236G4677 Erigeron canadensis HOM05D006032 ORTHO05D007544 8.3e-15 84.0 87 57.5
Cfa003882 Carpinus fangiana HOM05D006032 ORTHO05D007544 1.9e-14 82.8 86 54.7
Oeu054338.1 Olea europaea HOM05D006032 ORTHO05D007544 1.9e-14 82.8 88 59.1
Glyma.18G237400 Glycine max HOM05D006032 ORTHO05D007544 5.4e-14 81.3 88 53.4
TPR.G22296 Trifolium pratense HOM05D006032 ORTHO05D007544 5.4e-14 81.3 91 52.7
Potri.002G154600 Populus trichocarpa HOM05D006032 ORTHO05D007544 7.0e-14 80.9 86 54.7
CAN.G1091.3 Capsicum annuum HOM05D006032 ORTHO05D007544 9.2e-14 80.5 91 54.9
arahy.Tifrunner.gnm1.ann1.S0M071 Arachis hypogaea HOM05D006032 ORTHO05D007544 1.6e-13 79.7 92 52.2
AL6G52090 Arabidopsis lyrata HOM05D006032 ORTHO05D007544 2.0e-13 79.3 85 50.6
arahy.Tifrunner.gnm1.ann1.XQ5AKE Arachis hypogaea HOM05D006032 ORTHO05D007544 2.0e-13 79.3 94 51.1
A03p31970 Brassica napus HOM05D006032 ORTHO05D007544 2.0e-13 79.3 83 54.2
BraA03t12369Z Brassica rapa HOM05D006032 ORTHO05D007544 2.0e-13 79.3 83 54.2
Glyma.09G255500 Glycine max HOM05D006032 ORTHO05D007544 2.0e-13 79.3 88 51.1
Nn1g01650 Nelumbo nucifera HOM05D006032 ORTHO05D007544 2.0e-13 79.3 86 50.0
MELO3C006088.2 Cucumis melo HOM05D006032 ORTHO05D007544 4.6e-13 78.2 93 48.4
CiPaw.01G065600 Carya illinoinensis HOM05D006032 ORTHO05D007544 7.8e-13 77.4 87 54.0
Phvul.008G059200 Phaseolus vulgaris HOM05D006032 ORTHO05D007544 1.0e-12 77.0 90 53.3
Potri.014G089100 Populus trichocarpa HOM05D006032 ORTHO05D007544 1.0e-12 77.0 83 54.2
AT4G01310 Arabidopsis thaliana HOM05D006032 ORTHO05D007544 1.3e-12 76.6 85 50.6
Carub.0006s3637 Capsella rubella HOM05D006032 ORTHO05D007544 1.3e-12 76.6 85 50.6
Sabra02G0122600 Salix brachista HOM05D006032 ORTHO05D007544 1.3e-12 76.6 86 51.2
BcaB01g02152 Brassica carinata HOM05D006032 ORTHO05D007544 1.7e-12 76.3 83 50.6
CsaV3_3G008690 Cucumis sativus L. HOM05D006032 ORTHO05D007544 1.7e-12 76.3 93 49.5
Thhalv10028885m.g Eutrema salsugineum HOM05D006032 ORTHO05D007544 1.7e-12 76.3 85 50.6
Sp6g00830 Schrenkiella parvula HOM05D006032 ORTHO05D007544 1.7e-12 76.3 85 49.4
Hund27251 Selenicereus undatus HOM05D006032 ORTHO05D007544 1.7e-12 76.3 84 56.0
Aa31LG5G740 Aethionema arabicum HOM05D003611 ORTHO05D007544 2.3e-12 75.9 88 50.0
CARHR249010 Cardamine hirsuta HOM05D006032 ORTHO05D007544 2.3e-12 75.9 86 51.2
VMungo1383G0296 Vigna mungo HOM05D006032 ORTHO05D007544 3.0e-12 75.5 89 51.7
BcaC04g24141 Brassica carinata HOM05D006032 ORTHO05D007544 3.9e-12 75.1 85 50.6
C09p00670 Brassica napus HOM05D003611 ORTHO05D004281 3.9e-12 75.1 85 50.6
ClCG05G001320 Citrullus lanatus HOM05D006032 ORTHO05D007544 3.9e-12 75.1 92 51.1
BcaC01g06855 Brassica carinata HOM05D006032 ORTHO05D007544 1.1e-11 73.6 83 49.4
BolC3t16171H Brassica oleracea HOM05D006032 ORTHO05D007544 1.1e-11 73.6 83 49.4
BolC9t53001H Brassica oleracea HOM05D003611 ORTHO05D004281 1.1e-11 73.6 85 49.4
DCAR_006944 Daucus carota HOM05D006032 ORTHO05D007544 1.5e-11 73.2 86 48.8
C03p38990 Brassica napus HOM05D006032 ORTHO05D007544 1.9e-11 72.8 83 49.4
unitig_22.g5344 Utricularia gibba HOM05D003213 ORTHO05D003693 1.9e-11 72.8 63 63.5
BcaB01g02282 Brassica carinata HOM05D006032 ORTHO05D007544 2.5e-11 72.4 85 49.4
Ca_00819_v3 Cicer arietinum L. HOM05D006032 ORTHO05D007544 3.3e-11 72.0 90 50.0
TAR629G0912 Trochodendron aralioides HOM05D006032 ORTHO05D007544 3.3e-11 72.0 54 61.1
Aqoxy7G00233 Aquilegia oxysepala HOM05D006032 ORTHO05D007544 4.3e-11 71.6 112 43.8
Sed0022476 Sechium edule HOM05D006032 ORTHO05D007544 4.3e-11 71.6 91 50.5
BcaC03g16053 Brassica carinata HOM05D006032 ORTHO05D007544 7.3e-11 70.9 85 48.2
C02p38190 Brassica napus HOM05D006032 ORTHO05D007544 7.3e-11 70.9 85 48.2
BolC2t09834H Brassica oleracea HOM05D006032 ORTHO05D007544 7.3e-11 70.9 85 48.2
A09p00050 Brassica napus HOM05D003611 ORTHO05D004281 2.1e-10 69.3 85 47.1
BraA09t35736Z Brassica rapa HOM05D003611 ORTHO05D004281 2.1e-10 69.3 85 47.1
CDE04G3178 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 2.1e-10 69.3 92 46.7
EL10Ac1g00366 Beta vulgaris HOM05D006032 ORTHO05D007544 2.8e-10 68.9 91 49.5
AUR62022608 Chenopodium quinoa HOM05D006032 ORTHO05D007544 2.8e-10 68.9 90 47.8
Eucgr.D02319 Eucalyptus grandis HOM05D006032 ORTHO05D007544 3.6e-10 68.6 84 48.8
HPP92_025634 Vanilla planifolia HOM05D006032 ORTHO05D007544 4.7e-10 68.2 44 68.2
MBI04_g41504_MAGBIO Magnolia biondii HOM05D006032 ORTHO05D007544 6.2e-10 67.8 90 44.4
ATR0661G584 Amborella trichopoda HOM05D006032 ORTHO05D007544 8.1e-10 67.4 91 49.5
QL04p055082 Quercus lobata HOM05D006032 ORTHO05D007544 8.1e-10 67.4 87 51.7
Lalb_Chr19g0126911 Lupinus albus HOM05D006032 ORTHO05D007544 1.4e-09 66.6 95 48.4
Ah.05g180230 Amaranthus hybridus HOM05D003611 ORTHO05D007544 2.3e-09 65.9 84 48.8
Sc01g0003280 Simmondsia chinensis HOM05D006032 ORTHO05D007544 2.3e-09 65.9 88 48.9
CDE12G0723 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 5.2e-09 64.7 73 46.6
Lj4g0026145 Lotus japonicus HOM05D006032 ORTHO05D007544 1.2e-08 63.5 87 48.3
PSO782G5129 Papaver somniferum HOM05D006032 ORTHO05D007544 1.5e-08 63.2 93 45.2
AUR62004402 Chenopodium quinoa HOM05D006032 ORTHO05D007544 2.0e-08 62.8 90 45.6
Os03g0125000 Oryza sativa ssp. japonica HOM05D006032 ORTHO05D007544 2.2e-07 59.3 41 61.0
Zm00001eb001840 Zea mays HOM05D006032 ORTHO05D007544 6.4e-07 57.8 41 58.5
PSO478G3538 Papaver somniferum HOM05D006032 ORTHO05D007544 1.1e-06 57.0 51 54.9


User provided reference genes

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