Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0137700 Rhododendron simsii HOM05D004562 ORTHO05D005435 0.0e+00 2238.8 1139 100.0
vmacro16407 Vaccinium macrocarpon HOM05D004562 ORTHO05D005435 0.0e+00 1796.2 1140 82.2
Actinidia35140 Actinidia chinensis HOM05D004562 ORTHO05D005435 0.0e+00 1472.6 1145 69.9
Dinv02642 Davidia involucrata HOM05D004562 ORTHO05D005435 0.0e+00 1386.7 1147 66.1
QL10p030682 Quercus lobata HOM05D004562 ORTHO05D005435 0.0e+00 1165.6 1150 56.7
Cfa019638 Carpinus fangiana HOM05D004562 ORTHO05D005435 0.0e+00 1153.7 1154 57.1
COL.COLO4_28896 Corchorus olitorius HOM05D004562 ORTHO05D005435 0.0e+00 1123.2 1148 56.3
Gorai.008G290800 Gossypium raimondii HOM05D004562 ORTHO05D005435 0.0e+00 1106.7 1155 56.3
RcHm_v2.0_Chr7g0178201 Rosa chinensis HOM05D004562 ORTHO05D005435 0.0e+00 1104.7 1157 55.6
FAN08G1802 Fragaria x ananassa HOM05D004562 ORTHO05D005435 0.0e+00 1099.3 1157 55.1
FvH4_5g17490 Fragaria vesca HOM05D004562 ORTHO05D005435 0.0e+00 1093.6 1150 55.2
FAN18G3714 Fragaria x ananassa HOM05D004562 ORTHO05D005435 0.0e+00 1093.6 1150 55.2
Nn4g24285 Nelumbo nucifera HOM05D004562 ORTHO05D005435 0.0e+00 1091.3 1161 54.4
TWI60G0891 Tripterygium wilfordii HOM05D004562 ORTHO05D005435 0.0e+00 1087.4 1151 55.3
FAN04G0449 Fragaria x ananassa HOM05D004562 ORTHO05D005435 0.0e+00 1083.9 1150 55.0
MD14G1237500 Malus domestica HOM05D004562 ORTHO05D005435 0.0e+00 1083.9 1144 55.3
FAN13G2245 Fragaria x ananassa HOM05D004562 ORTHO05D005435 0.0e+00 1082.0 1152 54.8
Cc04_g06100 Coffea canephora HOM05D004562 ORTHO05D005435 0.0e+00 1079.7 1144 55.2
Ciclev10007290m.g Citrus clementina HOM05D004562 ORTHO05D005435 0.0e+00 1077.4 1152 54.9
PGSC0003DMG400005676 Solanum tuberosum HOM05D004562 ORTHO05D005435 0.0e+00 1076.2 1138 54.0
CANSAT80G2549 Cannabis sativa HOM05D004562 ORTHO05D005435 0.0e+00 1075.8 1150 54.0
Lj5A159T41 Lonicera japonica HOM05D004562 ORTHO05D005435 5.5e-311 1071.2 1164 54.1
Peaxi162Scf00314g00332 Petunia axillaris HOM05D004562 ORTHO05D005435 9.3e-311 1070.5 1136 53.2
CAN.G843.49 Capsicum annuum HOM05D004562 ORTHO05D005435 3.4e-310 1068.5 1134 53.9
MBI13_g01852_MAGBIO Magnolia biondii HOM05D004562 ORTHO05D005435 4.5e-310 1068.1 1174 53.6
GSVIVG01008458001 Vitis vinifera HOM05D004562 ORTHO05D005435 3.2e-308 1062.0 1145 54.9
MD06G1228300 Malus domestica HOM05D004562 ORTHO05D005435 8.0e-307 1057.4 1143 54.8
MSTRG.9309 Avicennia marina HOM05D004562 ORTHO05D005435 3.0e-306 1055.4 1156 53.0
Potri.015G036300 Populus trichocarpa HOM05D004562 ORTHO05D005435 3.0e-306 1055.4 1140 53.0
Sopen03g037570 Solanum pennellii HOM05D004562 ORTHO05D005435 2.0e-305 1052.7 1144 53.1
Glyma.08G055400 Glycine max HOM05D004562 ORTHO05D005435 1.8e-303 1046.2 1145 52.3
Solyc03g118620.3 Solanum lycopersicum HOM05D004562 ORTHO05D005435 1.8e-303 1046.2 1142 52.7
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 4.1e-303 1045.0 852 67.4
PGR044G1246 Punica granatum HOM05D004562 ORTHO05D005435 4.5e-302 1041.6 1136 53.3
Glyma.05G247000 Glycine max HOM05D004562 ORTHO05D005435 1.0e-301 1040.4 1145 51.9
Psat7g001240 Pisum sativum HOM05D004562 ORTHO05D005435 2.2e-301 1039.3 1152 52.2
Ca_17180_v3 Cicer arietinum L. HOM05D004562 ORTHO05D005435 3.8e-301 1038.5 1144 52.5
Aqoxy3G00029 Aquilegia oxysepala HOM05D004562 ORTHO05D005435 8.5e-301 1037.3 1148 52.1
Sabra15G0029800 Salix brachista HOM05D004562 ORTHO05D005435 1.5e-300 1036.6 1153 52.8
Sed0003970 Sechium edule HOM05D004562 ORTHO05D005435 1.9e-300 1036.2 1149 53.5
Lj4g0011431 Lotus japonicus HOM05D004562 ORTHO05D005435 5.5e-300 1034.6 1152 52.0
CsaV3_1G004480 Cucumis sativus L. HOM05D004562 ORTHO05D005435 2.7e-299 1032.3 1156 52.1
Eucgr.K02277 Eucalyptus grandis HOM05D004562 ORTHO05D005435 5.2e-298 1028.1 1140 53.2
Lalb_Chr05g0221581 Lupinus albus HOM05D004562 ORTHO05D005435 5.2e-298 1028.1 1145 51.1
Lalb_Chr09g0330331 Lupinus albus HOM05D004562 ORTHO05D005435 6.8e-298 1027.7 1144 51.8
Oeu026264.3 Olea europaea HOM05D004562 ORTHO05D005435 5.7e-297 1024.6 1232 50.8
Medtr8g107440 Medicago truncatula HOM05D004562 ORTHO05D005435 3.7e-296 1021.9 1142 51.7
Prupe.5G234800 Prunus persica HOM05D004562 ORTHO05D005435 1.8e-295 1019.6 1007 57.9
Haze_18884 Corylus avellana HOM05D004562 ORTHO05D005435 2.0e-294 1016.1 1152 52.8
Sed0022497 Sechium edule HOM05D004562 ORTHO05D005435 3.2e-292 1008.8 1145 51.7
TPR.G1465 Trifolium pratense HOM05D004562 ORTHO05D005435 5.5e-292 1008.1 1133 52.3
Nn3g18314 Nelumbo nucifera HOM05D004562 ORTHO05D005435 3.0e-290 1002.3 1221 49.5
arahy.Tifrunner.gnm1.ann1.WQ60SD Arachis hypogaea HOM05D004562 ORTHO05D005435 2.6e-289 999.2 1143 51.6
Gohir.D12G270500 Gossypium hirsutum HOM05D004562 ORTHO05D005435 4.1e-287 991.9 1008 57.2
CSS0019251 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 9.2e-287 990.7 722 74.1
Manes.06G004700 Manihot esculenta HOM05D004562 ORTHO05D005435 1.2e-286 990.3 1141 51.1
MELO3C017375.2 Cucumis melo HOM05D004562 ORTHO05D005435 3.8e-285 985.3 1071 53.7
HanXRQChr09g0268071 Helianthus annuus HOM05D004562 ORTHO05D005435 5.6e-284 981.5 1143 50.7
DCAR_011617 Daucus carota HOM05D004562 ORTHO05D005435 6.4e-280 968.0 1155 50.8
ClCG06G014190 Citrullus lanatus HOM05D004562 ORTHO05D005435 2.5e-276 956.1 1148 50.3
Gohir.A12G270000 Gossypium hirsutum HOM05D004562 ORTHO05D005435 3.3e-276 955.7 968 57.2
Thecc.03G058700 Theobroma cacao HOM05D004562 ORTHO05D005435 5.6e-276 954.9 1145 50.8
VMungo0251G1597 Vigna mungo HOM05D004562 ORTHO05D005435 5.6e-276 954.9 1143 49.5
EL10Ac8g19501 Beta vulgaris HOM05D004562 ORTHO05D005435 1.6e-275 953.4 1134 49.5
PSO478G3379 Papaver somniferum HOM05D004562 ORTHO05D005435 4.7e-275 951.8 1169 48.4
arahy.Tifrunner.gnm1.ann1.G227WQ Arachis hypogaea HOM05D004562 ORTHO05D005435 2.9e-272 942.6 1143 49.7
AUR62029906 Chenopodium quinoa HOM05D004562 ORTHO05D005435 2.9e-272 942.6 1137 49.6
THA.LOC104820345 Tarenaya hassleriana HOM05D004562 ORTHO05D005435 1.7e-269 933.3 1147 48.5
Duzib205G1225 Durio zibethinus HOM05D004562 ORTHO05D005435 3.9e-269 932.2 1159 49.1
ECA238G1924 Erigeron canadensis HOM05D004562 ORTHO05D005435 5.0e-269 931.8 1154 48.8
AUR62033795 Chenopodium quinoa HOM05D004562 ORTHO05D005435 1.6e-267 926.8 1150 49.1
Phvul.002G331100 Phaseolus vulgaris HOM05D004562 ORTHO05D005435 1.8e-266 923.3 1004 52.8
HanXRQChr02g0032401 Helianthus annuus HOM05D004562 ORTHO05D005435 2.0e-265 919.8 1144 48.7
CiPaw.15G144500 Carya illinoinensis HOM05D004562 ORTHO05D005435 1.4e-263 913.7 972 54.6
Lsat_1_v5_gn_2_14940 Lactuca sativa HOM05D004562 ORTHO05D005435 2.7e-262 909.4 1144 49.0
ATR0753G019 Amborella trichopoda HOM05D004562 ORTHO05D005435 6.6e-261 904.8 1162 47.4
PSO017G6436 Papaver somniferum HOM05D004562 ORTHO05D005435 8.6e-261 904.4 1179 46.9
CiPaw.16G096100 Carya illinoinensis HOM05D004562 ORTHO05D005435 2.5e-260 902.9 888 57.4
Ah.14g085940 Amaranthus hybridus HOM05D004562 ORTHO05D005435 3.3e-260 902.5 1143 48.1
Sc12g0007950 Simmondsia chinensis HOM05D004562 ORTHO05D005435 5.2e-258 895.2 1100 50.2
Thhalv10019973m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 1.2e-257 894.0 1142 47.1
AL3G31090 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 2.0e-257 893.3 1151 46.8
TAR374G0462 Trochodendron aralioides HOM05D004562 ORTHO05D005435 1.1e-255 887.5 734 66.8
AT3G17920 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 1.6e-254 883.6 1142 46.9
Carub.0003s1765 Capsella rubella HOM05D004562 ORTHO05D005435 2.3e-253 879.8 1141 46.7
BcaB06g25854 Brassica carinata HOM05D004562 ORTHO05D005435 3.9e-253 879.0 1144 46.6
BraA05t22020Z Brassica rapa HOM05D004562 ORTHO05D005435 5.1e-253 878.6 1139 46.5
Sp3g16040 Schrenkiella parvula HOM05D004562 ORTHO05D005435 6.6e-253 878.2 1142 46.5
BcaC05g28736 Brassica carinata HOM05D004562 ORTHO05D005435 2.5e-252 876.3 1141 46.3
BolC5t33574H Brassica oleracea HOM05D004562 ORTHO05D005435 2.5e-252 876.3 1141 46.3
A05p31880 Brassica napus HOM05D004562 ORTHO05D005435 4.3e-252 875.5 1141 46.5
CARHR038150 Cardamine hirsuta HOM05D004562 ORTHO05D005435 1.6e-251 873.6 1138 45.5
C05p48370 Brassica napus HOM05D004562 ORTHO05D005435 6.2e-251 871.7 1142 46.1
AL1G55180 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 1.1e-247 860.9 1142 45.5
BcaB07g33749 Brassica carinata HOM05D004562 ORTHO05D005435 7.1e-247 858.2 1139 45.7
Carub.0001s3765 Capsella rubella HOM05D004562 ORTHO05D005435 3.0e-245 852.8 1146 44.6
AT1G48540 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 6.6e-245 851.7 1064 47.4
A06p04420 Brassica napus HOM05D004562 ORTHO05D005435 1.5e-244 850.5 1127 45.3
C06p03060 Brassica napus HOM05D004562 ORTHO05D005435 2.8e-243 846.3 1129 45.1
BcaC08g43044 Brassica carinata HOM05D004562 ORTHO05D005435 1.4e-242 844.0 1129 45.0
BolC6t35426H Brassica oleracea HOM05D004562 ORTHO05D005435 1.4e-242 844.0 1129 45.1
Thhalv10011201m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 1.8e-242 843.6 1144 44.8
Aa31LG8G4790 Aethionema arabicum HOM05D004562 ORTHO05D005435 1.5e-241 840.5 1141 44.7
Aa31LG10G5260 Aethionema arabicum HOM05D004562 ORTHO05D005435 2.0e-241 840.1 1188 44.9
Migut.D01318 Erythranthe guttata HOM05D004562 ORTHO05D005435 2.9e-240 836.3 767 59.8
BraA06t23647Z Brassica rapa HOM05D004562 ORTHO05D005435 8.4e-240 834.7 1163 43.6
Sp1g35480 Schrenkiella parvula HOM05D004562 ORTHO05D005435 1.2e-238 830.9 1130 44.2
HPP92_016742 Vanilla planifolia HOM05D004562 ORTHO05D005435 1.6e-235 820.5 1148 44.1
Zm00001eb008950 Zea mays HOM05D004562 ORTHO05D005435 1.4e-231 807.4 1150 43.9
Gorai.005G132200 Gossypium raimondii HOM05D004562 ORTHO05D005435 1.3e-227 794.3 705 61.8
SGA_v2.0_scaffold172G39021 Striga asiatica HOM05D004562 ORTHO05D005435 3.7e-227 792.7 792 57.2
Gohir.D02G121900 Gossypium hirsutum HOM05D004562 ORTHO05D005435 3.1e-226 789.6 705 61.8
SalBow1G2489 Salvia bowleyana HOM05D004562 ORTHO05D005435 5.8e-225 785.4 698 62.5
Os03g0221800 Oryza sativa ssp. japonica HOM05D004562 ORTHO05D005435 2.9e-216 756.5 1163 43.8
Atru.chr9.1669 Acer truncatum HOM05D004562 ORTHO05D005435 3.2e-215 753.1 923 50.8
Nitab4.5_0001264g0030 Nicotiana tabacum HOM05D004562 ORTHO05D005435 1.8e-210 737.3 558 69.5
Potri.012G045300 Populus trichocarpa HOM05D004562 ORTHO05D005435 4.7e-206 722.6 554 68.2
Hund22308 Selenicereus undatus HOM05D004562 ORTHO05D005435 7.7e-201 705.3 893 49.5
CSS0012259 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 2.7e-198 696.8 617 61.8
CSS0042944 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 3.6e-198 696.4 617 61.6
Nitab4.5_0010397g0020 Nicotiana tabacum HOM05D004562 ORTHO05D005435 1.0e-197 694.9 448 78.1
Manes.14G172200 Manihot esculenta HOM05D004562 ORTHO05D005435 1.7e-195 687.6 911 46.3
CARHR093250 Cardamine hirsuta HOM05D004562 ORTHO05D005435 2.4e-194 683.7 875 47.4
CDE05G0309 Ceratophyllum demersum HOM05D004562 ORTHO05D005435 1.3e-187 661.4 1153 40.3
Sabra12G0031500 Salix brachista HOM05D004562 ORTHO05D005435 6.1e-182 642.5 988 43.1
unitig_46.g18720 Utricularia gibba HOM05D004562 ORTHO05D005435 8.6e-176 622.1 654 54.9
Cpa.g.sc3.379 Carica papaya HOM05D004562 ORTHO05D005435 1.5e-175 621.3 664 55.7
SEGI_15130 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 1.9e-167 594.3 922 43.1
Hma1.2p1_0163F.1_g072990 Hydrangea macrophylla HOM05D004562 ORTHO05D005435 1.4e-162 578.2 732 47.8
Pp3c10_10590 Physcomitrium patens HOM05D004562 ORTHO05D005435 1.5e-132 478.4 656 44.1
Mapoly0118s0042 Marchantia polymorpha HOM05D004562 ORTHO05D005435 2.6e-132 477.6 671 43.4
CSS0009282 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 4.4e-132 476.9 268 91.0
CSS0039239 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 4.4e-132 476.9 268 91.0
Gohir.A03G092940 Gossypium hirsutum HOM05D004562 ORTHO05D005435 2.1e-110 404.8 447 52.6
AagrBONN_evm.TU.Sc2ySwM_228.5527 Anthoceros agrestis HOM05D004562 ORTHO05D005435 3.3e-103 380.9 328 58.2
Gohir.A03G092980 Gossypium hirsutum HOM05D004562 ORTHO05D005435 8.5e-91 339.7 206 83.0
Duzib084G0184 Durio zibethinus HOM05D004562 ORTHO05D005435 1.1e-66 259.6 644 35.1
SEGI_31258 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 9.8e-63 246.5 793 28.8
CBR_g38780 Chara braunii HOM05D004562 ORTHO05D005435 2.2e-62 245.4 221 57.0
AUR62044432 Chenopodium quinoa HOM05D004562 ORTHO05D005435 1.8e-56 225.7 713 30.0
SHI19076 Sapria himalayana HOM05D004562 ORTHO05D005435 3.4e-55 221.5 142 79.6
CAN.G59.9 Capsicum annuum HOM05D004562 ORTHO05D005435 1.6e-41 176.0 154 63.6
CAN.G1490.14 Capsicum annuum HOM05D004562 ORTHO05D005435 6.8e-40 170.6 91 92.3
SHI19074 Sapria himalayana HOM05D004562 ORTHO05D005435 1.2e-36 159.8 148 56.8
CAN.G1687.2 Capsicum annuum HOM05D004562 ORTHO05D005435 4.3e-34 151.4 159 56.6
TAR374G0732 Trochodendron aralioides HOM05D004562 ORTHO05D005435 1.5e-31 142.9 183 43.2
SHI19075 Sapria himalayana HOM05D004562 ORTHO05D005435 9.9e-31 140.2 91 73.6
MCO11G516 Micromonas commoda HOM05D004562 ORTHO05D005435 9.9e-23 113.6 412 29.1
CAN.G22.26 Capsicum annuum HOM05D001423 ORTHO05D001412 3.0e-19 102.1 67 68.7
Cpa.g.sc3.375 Carica papaya HOM05D000419 ORTHO05D000692 3.2e-13 82.0 109 46.8
SHI19073 Sapria himalayana HOM05D004562 ORTHO05D005435 1.7e-11 76.3 299 26.8
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 4.0e-08 65.1 224 27.7
C03p70010 Brassica napus HOM05D004562 ORTHO05D005435 2.0e-07 62.8 110 36.4
Mapoly0105s0058 Marchantia polymorpha HOM05D027721 ORTHO05D031191 2.6e-07 62.4 248 25.0
Cfa024768 Carpinus fangiana HOM05D005225 ORTHO05D124687 1.3e-06 60.1 151 31.8


User provided reference genes

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