Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0135900 Rhododendron simsii HOM05D004724 ORTHO05D005734 0.0e+00 1147.5 638 100.0
CSS0008548 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.1e-248 862.4 596 78.7
Actinidia28645 Actinidia chinensis HOM05D004724 ORTHO05D005734 4.7e-248 861.3 596 75.2
Dinv15029 Davidia involucrata HOM05D004724 ORTHO05D005734 4.1e-228 795.0 536 75.7
Lj6A780T47 Lonicera japonica HOM05D004724 ORTHO05D005734 6.0e-227 791.2 598 69.2
Hma1.2p1_0354F.1_g133420 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 1.1e-225 786.9 597 69.7
CiPaw.05G125900 Carya illinoinensis HOM05D004724 ORTHO05D005734 9.5e-225 783.9 598 66.9
Oeu048146.1 Olea europaea HOM05D004724 ORTHO05D005734 4.7e-224 781.6 597 74.0
Dinv34076 Davidia involucrata HOM05D004724 ORTHO05D005734 2.3e-223 779.2 536 74.8
Nn3g17424 Nelumbo nucifera HOM05D004724 ORTHO05D005734 1.2e-222 776.9 594 66.8
Haze_11916 Corylus avellana HOM05D004724 ORTHO05D005734 2.9e-221 772.3 612 65.8
Nn4g23396 Nelumbo nucifera HOM05D004724 ORTHO05D005734 6.4e-221 771.2 594 66.2
Sc04g0007630 Simmondsia chinensis HOM05D004724 ORTHO05D005734 8.3e-221 770.8 594 66.8
QL03p072107 Quercus lobata HOM05D004724 ORTHO05D005734 5.4e-220 768.1 609 66.2
QL03p072513 Quercus lobata HOM05D004724 ORTHO05D005734 5.4e-220 768.1 609 66.2
GSVIVG01012211001 Vitis vinifera HOM05D004724 ORTHO05D005734 6.0e-219 764.6 598 66.4
MD13G1063400 Malus domestica HOM05D004724 ORTHO05D005734 6.2e-216 754.6 598 65.7
vmacro16381 Vaccinium macrocarpon HOM05D004724 ORTHO05D005734 4.0e-215 751.9 707 61.0
HanXRQChr08g0211831 Helianthus annuus HOM05D004724 ORTHO05D005734 5.8e-214 748.0 602 65.6
MD16G1061800 Malus domestica HOM05D004724 ORTHO05D005734 1.7e-213 746.5 598 65.7
Eucgr.B03160 Eucalyptus grandis HOM05D004724 ORTHO05D005734 7.1e-212 741.1 608 63.7
Cfa008886 Carpinus fangiana HOM05D004724 ORTHO05D005734 6.0e-211 738.0 598 64.2
Migut.E00049 Erythranthe guttata HOM05D004724 ORTHO05D005734 1.7e-210 736.5 599 64.1
Thecc.02G332500 Theobroma cacao HOM05D004724 ORTHO05D005734 2.5e-209 732.6 600 63.8
THA.LOC104822013 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 2.1e-208 729.6 593 63.6
MELO3C011422.2 Cucumis melo HOM05D004724 ORTHO05D005734 1.1e-207 727.2 598 64.0
TWI31G1115 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 1.4e-207 726.9 598 62.9
Manes.01G028400 Manihot esculenta HOM05D004724 ORTHO05D005734 3.1e-207 725.7 598 64.2
MSTRG.13448 Avicennia marina HOM05D004724 ORTHO05D005734 4.0e-207 725.3 601 62.9
PGR102G0250 Punica granatum HOM05D004724 ORTHO05D005734 2.0e-206 723.0 594 61.8
CsaV3_6G033660 Cucumis sativus L. HOM05D004724 ORTHO05D005734 2.6e-206 722.6 598 63.4
Lalb_Chr10g0098781 Lupinus albus HOM05D004724 ORTHO05D005734 4.4e-206 721.8 604 63.1
TWI79G1393 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 9.9e-206 720.7 598 62.2
TAR622G0524 Trochodendron aralioides HOM05D004724 ORTHO05D005734 9.9e-206 720.7 598 63.5
Gohir.D02G129300 Gossypium hirsutum HOM05D004724 ORTHO05D005734 2.2e-205 719.5 600 62.8
Gorai.005G145100 Gossypium raimondii HOM05D004724 ORTHO05D005734 4.9e-205 718.4 600 62.8
Sed0014019 Sechium edule HOM05D004724 ORTHO05D005734 9.3e-204 714.1 598 62.9
Prupe.1G286100 Prunus persica HOM05D004724 ORTHO05D005734 7.8e-203 711.1 598 62.9
Gohir.A03G104200 Gossypium hirsutum HOM05D004724 ORTHO05D005734 2.3e-202 709.5 601 62.2
ClCG08G010390 Citrullus lanatus HOM05D004724 ORTHO05D005734 3.0e-202 709.1 598 62.2
TAR374G1337 Trochodendron aralioides HOM05D004724 ORTHO05D005734 3.9e-202 708.8 598 63.0
Lsat_1_v5_gn_8_47681 Lactuca sativa HOM05D004724 ORTHO05D005734 1.3e-200 703.7 600 63.7
MBI16_g13587_MAGBIO Magnolia biondii HOM05D004724 ORTHO05D005734 1.6e-200 703.4 568 65.0
Atru.chr11.1649 Acer truncatum HOM05D004724 ORTHO05D005734 6.2e-200 701.4 599 60.6
Aa31LG7G8630 Aethionema arabicum HOM05D004724 ORTHO05D005734 2.4e-199 699.5 614 60.1
AT1G26460 Arabidopsis thaliana HOM05D004724 ORTHO05D005734 2.4e-199 699.5 594 61.3
Glyma.01G058200 Glycine max HOM05D004724 ORTHO05D005734 1.5e-198 696.8 602 60.3
Nitab4.5_0004171g0040 Nicotiana tabacum HOM05D004724 ORTHO05D005734 2.6e-198 696.0 601 60.4
TPR.G24471 Trifolium pratense HOM05D004724 ORTHO05D005734 2.6e-198 696.0 597 61.6
Potri.010G159100 Populus trichocarpa HOM05D004724 ORTHO05D005734 9.9e-198 694.1 603 62.2
CARHR025500 Cardamine hirsuta HOM05D004724 ORTHO05D005734 2.2e-197 693.0 594 60.4
Glyma.02G116000 Glycine max HOM05D004724 ORTHO05D005734 8.4e-197 691.0 601 60.6
FvH4_4g30160 Fragaria vesca HOM05D004724 ORTHO05D005734 1.1e-196 690.6 623 59.4
Sabra10G0120800 Salix brachista HOM05D004724 ORTHO05D005734 1.1e-196 690.6 602 64.8
Lj2g0005374 Lotus japonicus HOM05D004724 ORTHO05D005734 1.4e-196 690.3 595 59.2
CANSAT64G0483 Cannabis sativa HOM05D004724 ORTHO05D005734 1.9e-196 689.9 598 61.0
AUR62003111 Chenopodium quinoa HOM05D004724 ORTHO05D005734 5.4e-196 688.3 598 60.4
Ca_04959_v3 Cicer arietinum L. HOM05D004724 ORTHO05D005734 3.5e-195 685.6 608 59.2
PGSC0003DMG400028320 Solanum tuberosum HOM05D004724 ORTHO05D005734 3.5e-195 685.6 628 58.1
arahy.Tifrunner.gnm1.ann1.06XI8G Arachis hypogaea HOM05D004724 ORTHO05D005734 1.3e-194 683.7 623 63.9
RcHm_v2.0_Chr4g0438491 Rosa chinensis HOM05D004724 ORTHO05D005734 1.1e-193 680.6 624 58.7
Sopen05g007210 Solanum pennellii HOM05D004724 ORTHO05D005734 1.1e-193 680.6 628 57.2
Medtr5g044270 Medicago truncatula HOM05D004724 ORTHO05D005734 1.5e-193 680.2 634 56.9
AL1G39280 Arabidopsis lyrata HOM05D004724 ORTHO05D005734 5.6e-193 678.3 594 59.8
ATR0064G103 Amborella trichopoda HOM05D004724 ORTHO05D005734 2.1e-192 676.4 569 62.7
BolC5t31188H Brassica oleracea HOM05D004724 ORTHO05D005734 4.8e-192 675.2 579 59.9
arahy.Tifrunner.gnm1.ann1.CTA0UQ Arachis hypogaea HOM05D004724 ORTHO05D005734 6.2e-192 674.9 661 60.4
Carub.0001s2456 Capsella rubella HOM05D004724 ORTHO05D005734 1.4e-191 673.7 594 59.4
Ciclev10031249m.g Citrus clementina HOM05D004724 ORTHO05D005734 6.9e-191 671.4 598 58.4
ECA233G5398 Erigeron canadensis HOM05D004724 ORTHO05D005734 2.0e-190 669.8 599 59.9
FAN12G2645 Fragaria x ananassa HOM05D004724 ORTHO05D005734 3.4e-190 669.1 623 58.3
Nitab4.5_0000231g0420 Nicotiana tabacum HOM05D004724 ORTHO05D005734 4.5e-190 668.7 648 55.4
Psat2g129640 Pisum sativum HOM05D004724 ORTHO05D005734 7.6e-190 667.9 526 65.2
CAN.G616.33 Capsicum annuum HOM05D004724 ORTHO05D005734 4.9e-189 665.2 601 58.1
AUR62007926 Chenopodium quinoa HOM05D004724 ORTHO05D005734 2.4e-188 662.9 598 59.2
PSO017G2003 Papaver somniferum HOM05D004724 ORTHO05D005734 3.2e-188 662.5 597 59.0
COL.COLO4_27896 Corchorus olitorius HOM05D004724 ORTHO05D005734 4.2e-188 662.1 607 59.0
SalBow8G1172 Salvia bowleyana HOM05D004724 ORTHO05D005734 7.9e-187 657.9 643 56.5
PSO478G4140 Papaver somniferum HOM05D004724 ORTHO05D005734 1.0e-186 657.5 597 58.1
THA.LOC104805036 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 3.0e-186 656.0 597 58.0
Cc11_g12080 Coffea canephora HOM05D004724 ORTHO05D005734 8.7e-186 654.4 609 57.3
A09p39880 Brassica napus HOM05D004724 ORTHO05D005734 1.1e-185 654.1 568 59.0
BraA09t39487Z Brassica rapa HOM05D004724 ORTHO05D005734 1.1e-185 654.1 568 59.0
FAN07G2095 Fragaria x ananassa HOM05D004724 ORTHO05D005734 1.9e-185 653.3 630 59.8
Phvul.003G043100 Phaseolus vulgaris HOM05D004724 ORTHO05D005734 3.3e-185 652.5 597 62.8
FAN22G1297 Fragaria x ananassa HOM05D004724 ORTHO05D005734 5.6e-185 651.7 631 56.9
EL10Ac6g14982 Beta vulgaris HOM05D004724 ORTHO05D005734 4.8e-184 648.7 599 57.4
FAN17G2607 Fragaria x ananassa HOM05D004724 ORTHO05D005734 8.2e-184 647.9 640 59.2
Thhalv10007071m.g Eutrema salsugineum HOM05D004724 ORTHO05D005734 4.0e-183 645.6 568 59.2
C05p24540 Brassica napus HOM05D004724 ORTHO05D005734 1.2e-182 644.0 568 58.3
Hund25184 Selenicereus undatus HOM05D004724 ORTHO05D005734 2.0e-182 643.3 597 60.3
SalBow2G3108 Salvia bowleyana HOM05D004724 ORTHO05D005734 5.5e-180 635.2 625 56.2
HPP92_009526 Vanilla planifolia HOM05D004724 ORTHO05D005734 5.7e-177 625.2 598 56.7
HPP92_009555 Vanilla planifolia HOM05D004724 ORTHO05D005734 2.2e-176 623.2 598 56.7
Migut.L01196 Erythranthe guttata HOM05D004724 ORTHO05D005734 4.1e-175 619.0 570 63.9
Peaxi162Scf00175g00020 Petunia axillaris HOM05D004724 ORTHO05D005734 2.5e-172 609.8 711 49.6
CDE04G2698 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 1.8e-170 603.6 609 53.4
VMungo1215G0095 Vigna mungo HOM05D004724 ORTHO05D005734 3.1e-167 592.8 566 61.0
Aqoxy3G03611 Aquilegia oxysepala HOM05D004724 ORTHO05D005734 1.7e-165 587.0 574 61.3
SGA_v2.0_scaffold16G07777 Striga asiatica HOM05D004724 ORTHO05D005734 2.0e-161 573.5 630 51.6
SGA_v2.0_scaffold287G47167 Striga asiatica HOM05D004724 ORTHO05D005734 2.1e-155 553.5 524 56.9
DCAR_027471 Daucus carota HOM05D004724 ORTHO05D005734 1.8e-154 550.4 609 49.4
Os07g0599000 Oryza sativa ssp. japonica HOM05D004724 ORTHO05D005734 1.1e-148 531.2 566 49.8
Zm00001eb326730 Zea mays HOM05D004724 ORTHO05D005734 4.4e-145 519.2 571 49.0
Zm00001eb108470 Zea mays HOM05D004724 ORTHO05D005734 1.1e-143 514.6 571 48.7
SHI32884 Sapria himalayana HOM05D004724 ORTHO05D005734 4.5e-142 509.2 392 66.3
CiPaw.06G092100 Carya illinoinensis HOM05D004724 ORTHO05D005734 2.0e-137 493.8 628 48.4
CSS0031560 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.0e-125 454.9 368 66.8
CSS0025326 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 8.9e-122 441.8 367 66.2
CSS0034194 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 5.8e-121 439.1 323 71.8
CSS0043256 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.3e-120 438.0 322 72.0
CDE07G1937 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 8.3e-120 435.3 454 53.5
CSS0020440 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.4e-119 433.7 362 65.7
SEGI_02789 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 2.0e-118 430.6 386 57.8
CSS0037716 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 9.2e-111 405.2 368 62.5
Ah.02g126900 Amaranthus hybridus HOM05D004724 ORTHO05D005734 3.5e-110 403.3 454 49.3
CSS0003173 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.3e-104 384.8 371 59.6
Solyc05g012390.4 Solanum lycopersicum HOM05D004724 ORTHO05D005734 1.6e-99 367.9 320 59.1
CSS0040633 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.4e-97 360.1 323 61.0
CSS0030883 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.4e-95 354.0 320 62.5
DCAR_027465 Daucus carota HOM05D004724 ORTHO05D005734 7.3e-92 342.4 308 56.5
AagrBONN_evm.TU.Sc2ySwM_117.2858 Anthoceros agrestis HOM05D004724 ORTHO05D005734 4.3e-76 290.0 563 33.9
Mapoly0002s0313 Marchantia polymorpha HOM05D004724 ORTHO05D005734 1.6e-75 288.1 549 33.5
EL10Ac5g12464 Beta vulgaris HOM05D004724 ORTHO05D005734 1.1e-71 275.4 252 56.7
GSVIVG01028487001 Vitis vinifera HOM05D004724 ORTHO05D005734 7.6e-65 252.7 237 57.8
GSVIVG01021735001 Vitis vinifera HOM05D004724 ORTHO05D005734 1.2e-62 245.4 237 56.5
Pp3c1_28760 Physcomitrium patens HOM05D004724 ORTHO05D005734 7.9e-62 242.7 426 32.9
SHI32782 Sapria himalayana HOM05D004724 ORTHO05D005734 3.0e-61 240.7 422 37.4
Pp3c14_20030 Physcomitrium patens HOM05D004724 ORTHO05D005734 4.8e-59 233.4 491 30.8
QL03p072489 Quercus lobata HOM05D000013 ORTHO05D000011 4.8e-59 233.4 218 61.9
Nitab4.5_0011966g0020 Nicotiana tabacum HOM05D004724 ORTHO05D005734 1.1e-58 232.3 559 31.7
Cpa.g.sc1.117 Carica papaya HOM05D004724 ORTHO05D005734 2.5e-55 221.1 204 58.8
Actinidia32302 Actinidia chinensis HOM05D004724 ORTHO05D005734 7.7e-49 199.5 146 73.3
CBR_g55790 Chara braunii HOM05D004724 ORTHO05D005734 4.2e-47 193.7 535 26.7
GSVIVG01009940001 Vitis vinifera HOM05D004724 ORTHO05D005734 3.6e-38 164.1 98 76.5
SHI32882 Sapria himalayana HOM05D004724 ORTHO05D005734 4.7e-38 163.7 147 57.1
Medtr6g024415 Medicago truncatula HOM05D004724 ORTHO05D005734 1.1e-34 152.5 112 67.9
Actinidia32301 Actinidia chinensis HOM05D004724 ORTHO05D005734 2.5e-31 141.4 159 50.9
Gohir.D12G165033 Gossypium hirsutum HOM05D004724 ORTHO05D005734 1.8e-29 135.2 98 67.3
DCAR_027469 Daucus carota HOM05D004724 ORTHO05D005734 2.8e-27 127.9 212 38.2
QL03p072083 Quercus lobata HOM05D004724 ORTHO05D005734 2.0e-25 121.7 90 67.8
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 1.7e-19 102.1 103 52.4
Medtr1g009040 Medicago truncatula HOM05D004724 ORTHO05D005734 3.8e-16 90.9 176 36.9
Hma1.2p1_0477F.1_g160970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 3.6e-14 84.3 44 84.1
Hma1.2p1_1953F.1_g308830 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 3.6e-14 84.3 44 84.1
Hma1.2p1_0820F.1_g223970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 1.0e-13 82.8 48 81.2
Nn4g24499 Nelumbo nucifera HOM05D000723 ORTHO05D278618 1.2e-09 69.3 113 38.9
Gohir.D12G165066 Gossypium hirsutum HOM05D004724 ORTHO05D005734 1.6e-09 68.9 55 54.5


User provided reference genes

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