Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0110100 Rhododendron simsii HOM05D003422 ORTHO05D004263 1.3e-238 829.3 423 100.0
Rhsim02G0001300 Rhododendron simsii HOM05D003422 ORTHO05D004263 6.2e-148 528.1 388 72.9
Rhsim06G0078600 Rhododendron simsii HOM05D003422 ORTHO05D004263 5.8e-146 521.5 387 72.6
Atru.chr3.1581 Acer truncatum HOM05D003422 ORTHO05D004263 4.1e-99 365.9 335 62.1
Hma1.2p1_3343F.1_g335440 Hydrangea macrophylla HOM05D003422 ORTHO05D004263 1.2e-98 364.4 346 61.6
CSS0036067 Camellia sinensis var. sinensis HOM05D003422 ORTHO05D004263 1.6e-98 364.0 339 61.1
Atru.chr2.1587 Acer truncatum HOM05D003422 ORTHO05D004263 1.5e-96 357.5 345 60.0
TAR622G0502 Trochodendron aralioides HOM05D003422 ORTHO05D004263 4.2e-96 355.9 345 60.3
Ciclev10032237m.g Citrus clementina HOM05D003422 ORTHO05D004263 6.8e-94 348.6 341 58.4
Oeu041425.1 Olea europaea HOM05D003422 ORTHO05D004263 6.8e-94 348.6 338 60.7
Dinv15231 Davidia involucrata HOM05D003422 ORTHO05D004263 1.2e-93 347.8 349 58.5
vmacro17129 Vaccinium macrocarpon HOM05D003422 ORTHO05D004263 2.6e-93 346.7 334 59.9
MD03G1198200 Malus domestica HOM05D003422 ORTHO05D004263 7.5e-93 345.1 339 59.6
RcHm_v2.0_Chr7g0190541 Rosa chinensis HOM05D003422 ORTHO05D004263 9.8e-93 344.7 344 57.6
Sed0026406 Sechium edule HOM05D003422 ORTHO05D004263 2.8e-92 343.2 336 58.9
CiPaw.05G159400 Carya illinoinensis HOM05D003422 ORTHO05D004263 3.7e-92 342.8 340 58.5
QL03p061510 Quercus lobata HOM05D003422 ORTHO05D004263 3.7e-92 342.8 345 58.6
GSVIVG01007655001 Vitis vinifera HOM05D003422 ORTHO05D004263 3.7e-92 342.8 345 58.3
GSVIVG01021879001 Vitis vinifera HOM05D003422 ORTHO05D004263 3.7e-92 342.8 345 58.3
RcHm_v2.0_Chr4g0433011 Rosa chinensis HOM05D003422 ORTHO05D004263 6.3e-92 342.0 339 59.3
CANSAT64G0467 Cannabis sativa HOM05D003422 ORTHO05D004263 8.3e-92 341.7 340 57.9
Nitab4.5_0016963g0010 Nicotiana tabacum HOM05D003422 ORTHO05D004263 8.3e-92 341.7 345 59.1
MD11G1214400 Malus domestica HOM05D003422 ORTHO05D004263 1.1e-91 341.3 342 58.8
Nn8g39875 Nelumbo nucifera HOM05D003422 ORTHO05D004263 1.1e-91 341.3 335 59.7
Haze_12250 Corylus avellana HOM05D003422 ORTHO05D004263 1.4e-91 340.9 344 57.8
CiPaw.05G181800 Carya illinoinensis HOM05D003422 ORTHO05D004263 3.1e-91 339.7 345 56.5
Actinidia15098 Actinidia chinensis HOM05D003422 ORTHO05D004263 4.1e-91 339.3 340 60.0
QL03p058012 Quercus lobata HOM05D003422 ORTHO05D004263 4.1e-91 339.3 344 58.4
Cfa009213 Carpinus fangiana HOM05D003422 ORTHO05D004263 5.4e-91 339.0 344 57.6
Prupe.1G244800 Prunus persica HOM05D003422 ORTHO05D004263 3.5e-90 336.3 343 58.6
TWI39G0719 Tripterygium wilfordii HOM05D003422 ORTHO05D004263 3.5e-90 336.3 336 57.7
Nitab4.5_0001565g0060 Nicotiana tabacum HOM05D003422 ORTHO05D004263 7.8e-90 335.1 342 58.8
CAN.G158.25 Capsicum annuum HOM05D003422 ORTHO05D004263 2.3e-89 333.6 336 58.6
Prupe.8G016700 Prunus persica HOM05D003422 ORTHO05D004263 3.8e-89 332.8 341 58.9
arahy.Tifrunner.gnm1.ann1.G4VR7T Arachis hypogaea HOM05D003422 ORTHO05D004263 5.0e-89 332.4 352 57.1
Nitab4.5_0009109g0040 Nicotiana tabacum HOM05D003422 ORTHO05D004263 5.0e-89 332.4 342 58.5
Sopen01g001810 Solanum pennellii HOM05D003422 ORTHO05D004263 8.6e-89 331.6 345 56.5
Cfa012129 Carpinus fangiana HOM05D003422 ORTHO05D004263 1.1e-88 331.3 343 56.6
Haze_08919 Corylus avellana HOM05D003422 ORTHO05D004263 1.1e-88 331.3 343 56.6
Peaxi162Scf00128g00219 Petunia axillaris HOM05D003422 ORTHO05D004263 1.1e-88 331.3 292 63.4
Solyc01g005810.3 Solanum lycopersicum HOM05D003422 ORTHO05D004263 1.1e-88 331.3 341 56.6
TWI23G0208 Tripterygium wilfordii HOM05D003422 ORTHO05D004263 1.1e-88 331.3 337 56.4
Cc11_g15770 Coffea canephora HOM05D003422 ORTHO05D004263 1.6e-87 327.4 345 56.2
Manes.13G024200 Manihot esculenta HOM05D003422 ORTHO05D004263 1.6e-87 327.4 338 58.6
Sc14g0008740 Simmondsia chinensis HOM05D003422 ORTHO05D004263 2.8e-87 326.6 336 56.2
arahy.Tifrunner.gnm1.ann1.I3QT17 Arachis hypogaea HOM05D003422 ORTHO05D004263 8.0e-87 325.1 352 55.4
Nn8g40815 Nelumbo nucifera HOM05D003422 ORTHO05D004263 1.0e-86 324.7 360 55.8
MELO3C017744.2 Cucumis melo HOM05D003422 ORTHO05D004263 1.8e-86 323.9 339 56.6
TAR374G1409 Trochodendron aralioides HOM05D003422 ORTHO05D004263 1.8e-86 323.9 354 55.4
Hund06028 Selenicereus undatus HOM05D003422 ORTHO05D004263 3.1e-86 323.2 337 57.9
FAN07G0682 Fragaria x ananassa HOM05D003422 ORTHO05D004263 6.8e-86 322.0 334 56.6
Sed0010066 Sechium edule HOM05D003422 ORTHO05D004263 6.8e-86 322.0 324 58.6
ClCG07G015410 Citrullus lanatus HOM05D003422 ORTHO05D004263 8.9e-86 321.6 332 57.8
FAN22G1899 Fragaria x ananassa HOM05D003422 ORTHO05D004263 7.5e-85 318.5 338 55.0
PGSC0003DMG400032131 Solanum tuberosum HOM05D003422 ORTHO05D004263 2.2e-84 317.0 345 54.2
CsaV3_4G003000 Cucumis sativus L. HOM05D003422 ORTHO05D004263 4.9e-84 315.8 242 68.2
FAN17G2514 Fragaria x ananassa HOM05D003422 ORTHO05D004263 8.3e-84 315.1 338 55.0
Potri.012G085300 Populus trichocarpa HOM05D003422 ORTHO05D004263 1.4e-83 314.3 342 54.1
Potri.015G083700 Populus trichocarpa HOM05D003422 ORTHO05D004263 1.9e-83 313.9 341 54.8
Nn2g13933 Nelumbo nucifera HOM05D003422 ORTHO05D004263 3.2e-83 313.2 266 65.0
Phvul.010G035100 Phaseolus vulgaris HOM05D003422 ORTHO05D004263 7.0e-83 312.0 345 54.8
Sabra15G0107000 Salix brachista HOM05D003422 ORTHO05D004263 9.2e-83 311.6 346 54.0
Phvul.011G000100 Phaseolus vulgaris HOM05D003422 ORTHO05D004263 1.2e-82 311.2 345 54.5
FAN06G1621 Fragaria x ananassa HOM05D003422 ORTHO05D004263 1.7e-81 307.4 324 55.9
TPR.G28314 Trifolium pratense HOM05D003422 ORTHO05D004263 1.7e-81 307.4 339 55.2
HanXRQChr06g0172831 Helianthus annuus HOM05D003422 ORTHO05D004263 2.3e-81 307.0 341 54.0
Cpa.g.sc33.23 Carica papaya HOM05D003422 ORTHO05D004263 3.0e-81 306.6 303 58.7
Atru.chr3.1559 Acer truncatum HOM05D003422 ORTHO05D004263 8.6e-81 305.1 334 55.1
Dinv38208 Davidia involucrata HOM05D003422 ORTHO05D004263 8.6e-81 305.1 254 65.4
FvH4_4g25580 Fragaria vesca HOM05D003422 ORTHO05D004263 1.1e-80 304.7 340 53.8
Psat7g167080 Pisum sativum HOM05D003422 ORTHO05D004263 1.5e-80 304.3 347 53.9
Eucgr.B00992 Eucalyptus grandis HOM05D003422 ORTHO05D004263 2.5e-80 303.5 340 53.8
Lsat_1_v5_gn_8_152261 Lactuca sativa HOM05D003422 ORTHO05D004263 7.3e-80 302.0 328 55.2
DCAR_026512 Daucus carota HOM05D003422 ORTHO05D004263 9.5e-80 301.6 338 53.3
Thhalv10008312m.g Eutrema salsugineum HOM05D003422 ORTHO05D004263 3.6e-79 299.7 335 53.1
Sabra12G0061400 Salix brachista HOM05D003422 ORTHO05D004263 3.6e-79 299.7 318 55.7
BcaB05g24600 Brassica carinata HOM05D003422 ORTHO05D004263 6.2e-79 298.9 246 64.6
Aqoxy5G03760 Aquilegia oxysepala HOM05D003422 ORTHO05D004263 8.0e-79 298.5 334 53.0
Glyma.12G119800 Glycine max HOM05D003422 ORTHO05D004263 1.1e-78 298.1 351 52.4
BcaC08g45809 Brassica carinata HOM05D003422 ORTHO05D004263 3.1e-78 296.6 246 64.2
C06p36020 Brassica napus HOM05D003422 ORTHO05D004263 3.1e-78 296.6 246 64.2
BolC6t38723H Brassica oleracea HOM05D003422 ORTHO05D004263 3.1e-78 296.6 246 64.2
Lalb_Chr04g0254851 Lupinus albus HOM05D003422 ORTHO05D004263 4.0e-78 296.2 346 52.9
A07p31020 Brassica napus HOM05D003422 ORTHO05D004263 5.2e-78 295.8 246 64.2
BraA02t06729Z Brassica rapa HOM05D003422 ORTHO05D004263 5.2e-78 295.8 246 63.8
BcaB03g15550 Brassica carinata HOM05D003422 ORTHO05D004263 6.8e-78 295.4 246 63.8
Glyma.06G286100 Glycine max HOM05D003422 ORTHO05D004263 6.8e-78 295.4 348 51.7
BcaC03g15214 Brassica carinata HOM05D003422 ORTHO05D004263 1.5e-77 294.3 246 63.4
C02p28010 Brassica napus HOM05D003422 ORTHO05D004263 1.5e-77 294.3 246 63.4
BolC2t08844H Brassica oleracea HOM05D003422 ORTHO05D004263 1.5e-77 294.3 246 63.4
TPR.G37166 Trifolium pratense HOM05D003422 ORTHO05D004263 2.0e-77 293.9 356 52.0
VMungo1127G0899 Vigna mungo HOM05D003422 ORTHO05D004263 2.6e-77 293.5 345 51.9
Eucgr.K01009 Eucalyptus grandis HOM05D003422 ORTHO05D004263 4.4e-77 292.7 338 53.0
PGR102G0689 Punica granatum HOM05D003422 ORTHO05D004263 4.4e-77 292.7 242 64.0
HPP92_014432 Vanilla planifolia HOM05D003422 ORTHO05D004263 5.8e-77 292.4 340 53.5
arahy.Tifrunner.gnm1.ann1.FFB06F Arachis hypogaea HOM05D003422 ORTHO05D004263 7.5e-77 292.0 333 55.0
EL10Ac6g13812 Beta vulgaris HOM05D003422 ORTHO05D004263 1.3e-76 291.2 335 52.8
Sp5g25830 Schrenkiella parvula HOM05D003422 ORTHO05D004263 1.7e-76 290.8 337 52.5
PSO017G4826 Papaver somniferum HOM05D003422 ORTHO05D004263 3.7e-76 289.7 344 51.2
CARHR023720 Cardamine hirsuta HOM05D003422 ORTHO05D004263 6.4e-76 288.9 238 62.2
Lalb_Chr10g0099861 Lupinus albus HOM05D003422 ORTHO05D004263 8.3e-76 288.5 346 52.3
Migut.E00204 Erythranthe guttata HOM05D003422 ORTHO05D004263 1.1e-75 288.1 238 64.7
A02p16750 Brassica napus HOM05D003422 ORTHO05D004263 7.0e-75 285.4 246 62.2
PSO017G5618 Papaver somniferum HOM05D003422 ORTHO05D004263 1.6e-74 284.3 339 50.7
Lsat_1_v5_gn_5_166341 Lactuca sativa HOM05D003422 ORTHO05D004263 2.1e-74 283.9 329 53.5
PSO478G1628 Papaver somniferum HOM05D003422 ORTHO05D004263 2.1e-74 283.9 340 50.3
Aa31LG7G7310 Aethionema arabicum HOM05D003422 ORTHO05D004263 1.7e-73 280.8 349 50.1
SEGI_07600 Sequoiadendron giganteum HOM05D003422 ORTHO05D004263 6.6e-73 278.9 354 47.7
Duzib068G0444 Durio zibethinus HOM05D003422 ORTHO05D004263 1.5e-72 277.7 337 51.3
THA.LOC104822989 Tarenaya hassleriana HOM05D003422 ORTHO05D004263 1.5e-72 277.7 339 51.3
Carub.0001s2287 Capsella rubella HOM05D003422 ORTHO05D004263 2.5e-72 276.9 338 50.3
Ca_20120_v3 Cicer arietinum L. HOM05D003422 ORTHO05D004263 2.5e-72 276.9 346 50.9
Medtr2g103560 Medicago truncatula HOM05D003422 ORTHO05D004263 3.3e-72 276.6 368 49.2
BolC3t17554H Brassica oleracea HOM05D003422 ORTHO05D004263 4.3e-72 276.2 354 50.3
AT1G23280 Arabidopsis thaliana HOM05D003422 ORTHO05D004263 7.3e-72 275.4 339 49.6
BcaC01g03409 Brassica carinata HOM05D003422 ORTHO05D004263 1.2e-71 274.6 353 50.1
C03p52870 Brassica napus HOM05D003422 ORTHO05D004263 1.2e-71 274.6 353 50.1
unitig_21.g20608 Utricularia gibba HOM05D003422 ORTHO05D004263 2.8e-71 273.5 325 52.6
Lj1g0018398 Lotus japonicus HOM05D003422 ORTHO05D004263 5.2e-70 269.2 343 49.3
AL1G31870 Arabidopsis lyrata HOM05D003422 ORTHO05D004263 8.9e-70 268.5 298 53.0
ECA233G3049 Erigeron canadensis HOM05D003422 ORTHO05D004263 2.0e-69 267.3 341 49.0
BraA03t13450Z Brassica rapa HOM05D003422 ORTHO05D004263 7.5e-69 265.4 334 50.0
AUR62017869 Chenopodium quinoa HOM05D003422 ORTHO05D004263 7.5e-69 265.4 341 48.1
AUR62003555 Chenopodium quinoa HOM05D003422 ORTHO05D004263 1.3e-68 264.6 341 48.1
Os07g0270900 Oryza sativa ssp. japonica HOM05D003422 ORTHO05D004263 1.3e-68 264.6 236 58.5
COL.COLO4_05559 Corchorus olitorius HOM05D003422 ORTHO05D004263 1.7e-68 264.2 330 51.5
Eucgr.K00985 Eucalyptus grandis HOM05D003422 ORTHO05D004263 1.7e-68 264.2 242 60.7
ATR0824G091 Amborella trichopoda HOM05D003422 ORTHO05D004263 3.2e-67 260.0 344 47.1
A03p43080 Brassica napus HOM05D003422 ORTHO05D004263 3.2e-67 260.0 364 46.2
Zm00001eb364260 Zea mays HOM05D003422 ORTHO05D004263 5.4e-67 259.2 314 48.7
Gorai.008G217200 Gossypium raimondii HOM05D003422 ORTHO05D004263 2.1e-66 257.3 335 49.6
Thecc.03G025100 Theobroma cacao HOM05D003422 ORTHO05D004263 3.0e-65 253.4 320 50.6
CDE02G2608 Ceratophyllum demersum HOM05D003422 ORTHO05D004263 3.9e-65 253.1 281 54.1
Gohir.A12G199400 Gossypium hirsutum HOM05D003422 ORTHO05D004263 5.1e-65 252.7 342 48.5
Gohir.D12G202200 Gossypium hirsutum HOM05D003422 ORTHO05D004263 5.1e-65 252.7 334 49.7
Medtr4g079190 Medicago truncatula HOM05D003422 ORTHO05D004263 5.1e-65 252.7 343 48.1
AL1G37060 Arabidopsis lyrata HOM05D003422 ORTHO05D004263 2.5e-64 250.4 299 50.8
SMO331G0073 Selaginella moellendorffii HOM05D003422 ORTHO05D004263 7.3e-64 248.8 314 46.2
BraA01t03342Z Brassica rapa HOM05D003422 ORTHO05D004263 2.1e-63 247.3 323 49.5
A01p32170 Brassica napus HOM05D003422 ORTHO05D004263 2.8e-63 246.9 322 49.7
SpUn0343_0020 Schrenkiella parvula HOM05D003422 ORTHO05D004263 1.4e-62 244.6 321 49.5
Mapoly0061s0104 Marchantia polymorpha HOM05D003422 ORTHO05D004263 2.4e-62 243.8 355 45.1
vmacro16194 Vaccinium macrocarpon HOM05D003422 ORTHO05D004263 5.2e-62 242.7 250 56.0
SGA_v2.0_scaffold63G21735 Striga asiatica HOM05D003637 ORTHO05D004175 3.8e-60 236.5 271 53.9
Nitab4.5_0000979g0040 Nicotiana tabacum HOM05D003422 ORTHO05D004263 1.4e-59 234.6 154 77.3
BcaC09g49229 Brassica carinata HOM05D003422 ORTHO05D004263 7.1e-59 232.3 330 46.7
Actinidia27808 Actinidia chinensis HOM05D003422 ORTHO05D004263 6.0e-58 229.2 336 47.3
Pp3c2_4220 Physcomitrium patens HOM05D003422 ORTHO05D004263 1.3e-57 228.0 359 43.5
SEGI_01875 Sequoiadendron giganteum HOM05D003422 ORTHO05D004263 5.1e-57 226.1 131 80.9
CBR_g32274 Chara braunii HOM05D003422 ORTHO05D004263 1.5e-56 224.6 288 46.2
CDE05G1364 Ceratophyllum demersum HOM05D003422 ORTHO05D004263 3.3e-56 223.4 298 44.6
Prupe.8G011700 Prunus persica HOM05D003422 ORTHO05D004263 1.7e-52 211.1 281 51.6
FvH4_7g31100 Fragaria vesca HOM05D003422 ORTHO05D004263 1.9e-51 207.6 243 49.0
Cre02.g145231 Chlamydomonas reinhardtii HOM05D003422 ORTHO05D004263 2.1e-50 204.1 239 47.7
ATR0996G003 Amborella trichopoda HOM05D003422 ORTHO05D004263 7.8e-50 202.2 313 45.0
PRCOL_00004566 Prasinoderma coloniale HOM05D003422 ORTHO05D004263 1.3e-49 201.4 267 44.6
Actinidia01349 Actinidia chinensis HOM05D003422 ORTHO05D004263 3.6e-47 193.4 317 46.1
Pp3c1_36430 Physcomitrium patens HOM05D003422 ORTHO05D004263 2.1e-42 177.6 357 38.4
SGA_v2.0_scaffold87G27078 Striga asiatica HOM05D003637 ORTHO05D004175 6.7e-41 172.6 255 46.3
Cfa026988 Carpinus fangiana HOM05D003422 ORTHO05D004263 2.1e-39 167.5 263 41.8
MCO01G280 Micromonas commoda HOM05D003422 ORTHO05D004263 4.9e-36 156.4 134 55.2
Haze_26253 Corylus avellana HOM05D003422 ORTHO05D004263 2.1e-34 151.0 255 36.5
Eucgr.K00976 Eucalyptus grandis HOM05D003422 ORTHO05D004263 7.9e-34 149.1 335 37.0
Eucgr.B00881 Eucalyptus grandis HOM05D003422 ORTHO05D004263 1.5e-29 134.8 70 94.3
Lj1A759T42 Lonicera japonica HOM05D003422 ORTHO05D004263 5.8e-29 132.9 197 47.2
BolC1t04073H Brassica oleracea HOM05D003422 ORTHO05D004263 1.1e-27 128.6 71 80.3
C01p41190 Brassica napus HOM05D003422 ORTHO05D004263 1.9e-27 127.9 71 78.9
Os07g0271600 Oryza sativa ssp. japonica HOM05D003422 ORTHO05D004263 3.3e-24 117.1 77 71.4
Ah.04g165080 Amaranthus hybridus HOM05D002611 ORTHO05D002822 3.7e-23 113.6 222 40.5
BolC4t24676H Brassica oleracea HOM05D003422 ORTHO05D004263 4.1e-22 110.2 114 57.9
BcaB04g17046 Brassica carinata HOM05D003422 ORTHO05D004263 6.9e-22 109.4 118 53.4
vmacro17128 Vaccinium macrocarpon HOM05D003422 ORTHO05D004263 6.9e-22 109.4 99 63.6
BcaB07g33435 Brassica carinata HOM05D003422 ORTHO05D004263 7.7e-21 105.9 122 50.8
BcaB01g03637 Brassica carinata HOM05D003422 ORTHO05D004263 1.1e-19 102.1 123 51.2
AagrBONN_evm.TU.Sc2ySwM_344.1527 Anthoceros agrestis HOM05D003422 ORTHO05D004263 7.2e-19 99.4 227 33.9
FAN06G3710 Fragaria x ananassa HOM05D003422 ORTHO05D004263 9.4e-19 99.0 46 91.3
Nitab4.5_0000979g0020 Nicotiana tabacum HOM05D003422 ORTHO05D004263 2.2e-15 87.8 217 38.2
Oeu036040.1 Olea europaea HOM05D003422 ORTHO05D004263 2.0e-13 81.3 131 41.2
BcaC02g10230 Brassica carinata HOM05D003422 ORTHO05D004263 2.9e-12 77.4 73 60.3
BcaB01g02833 Brassica carinata HOM05D003422 ORTHO05D004263 3.2e-11 73.9 119 42.9
FAN10G4221 Fragaria x ananassa HOM05D003422 ORTHO05D004263 2.1e-10 71.2 204 35.8
FAN10G4187 Fragaria x ananassa HOM05D003422 ORTHO05D004263 6.1e-10 69.7 76 50.0
SEGI_38458 Sequoiadendron giganteum HOM05D003422 ORTHO05D004263 6.7e-09 66.2 188 33.0
QL03p061482 Quercus lobata HOM05D003422 ORTHO05D034179 1.1e-08 65.5 182 37.4
TWI60G0838 Tripterygium wilfordii HOM05D003422 ORTHO05D413943 1.4e-06 58.5 27 92.6
Haze_18771 Corylus avellana HOM05D003422 ORTHO05D165180 5.3e-06 56.6 49 61.2


User provided reference genes

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