Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0108400 Rhododendron simsii HOM05D004112 ORTHO05D004739 4.0e-299 1030.8 573 100.0
vmacro16177 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 3.5e-218 761.9 616 70.0
Actinidia15108 Actinidia chinensis HOM05D004112 ORTHO05D004739 8.8e-145 518.1 697 45.9
Actinidia37446 Actinidia chinensis HOM05D004112 ORTHO05D004739 4.8e-143 512.3 687 45.9
CSS0011275 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 9.7e-136 488.0 593 47.2
Rhsim12G0039400 Rhododendron simsii HOM05D004112 ORTHO05D004739 1.8e-118 430.6 639 43.2
CSS0023851 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 3.1e-118 429.9 662 43.7
Dinv15208 Davidia involucrata HOM05D004112 ORTHO05D004739 8.6e-108 395.2 702 43.2
TAR622G0947 Trochodendron aralioides HOM05D004112 ORTHO05D004739 1.2e-104 384.8 623 37.2
vmacro01117 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 2.8e-98 363.6 559 40.8
Actinidia08126 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.8e-97 360.9 640 40.9
Dinv14739 Davidia involucrata HOM05D004112 ORTHO05D004739 4.0e-97 359.8 611 39.0
Nn3g16670 Nelumbo nucifera HOM05D004112 ORTHO05D004739 1.7e-95 354.4 634 38.2
GSVIVG01000557001 Vitis vinifera HOM05D004112 ORTHO05D004739 6.4e-95 352.4 652 39.6
Actinidia01360 Actinidia chinensis HOM05D004112 ORTHO05D004739 3.6e-90 336.7 620 38.5
Thecc.02G263400 Theobroma cacao HOM05D004112 ORTHO05D004739 1.8e-89 334.3 640 35.9
CiPaw.05G178200 Carya illinoinensis HOM05D004112 ORTHO05D004739 7.5e-88 328.9 621 35.7
QL03p056879 Quercus lobata HOM05D004112 ORTHO05D004739 2.2e-87 327.4 627 35.7
Prupe.1G242900 Prunus persica HOM05D004112 ORTHO05D004739 1.4e-86 324.7 667 34.6
TWI18G0097 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 3.2e-86 323.6 634 35.2
Gohir.D01G152000 Gossypium hirsutum HOM05D004112 ORTHO05D004739 6.6e-84 315.8 641 35.7
TWI36G0458 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 4.3e-83 313.2 701 33.5
Gohir.A01G158700 Gossypium hirsutum HOM05D004112 ORTHO05D004739 7.5e-80 302.4 634 35.8
Gorai.002G188300 Gossypium raimondii HOM05D004112 ORTHO05D004739 1.3e-79 301.6 673 34.5
Atru.chr11.2164 Acer truncatum HOM05D004112 ORTHO05D004739 2.9e-79 300.4 651 34.3
MD13G1102900 Malus domestica HOM05D004112 ORTHO05D004739 5.4e-78 296.2 658 35.4
Sc26g0001570 Simmondsia chinensis HOM05D004112 ORTHO05D004739 4.6e-77 293.1 570 36.5
Cc11_g15970 Coffea canephora HOM05D004112 ORTHO05D004739 7.8e-77 292.4 706 33.3
Duzib268G0184 Durio zibethinus HOM05D004112 ORTHO05D004739 1.3e-76 291.6 613 34.7
Aqoxy3G01258 Aquilegia oxysepala HOM05D004112 ORTHO05D004739 3.0e-76 290.4 666 34.4
Manes.13G021500 Manihot esculenta HOM05D004112 ORTHO05D004739 1.9e-75 287.7 621 39.9
ClCG05G025880 Citrullus lanatus HOM05D004112 ORTHO05D004739 7.3e-75 285.8 635 33.7
MD16G1103100 Malus domestica HOM05D004112 ORTHO05D004739 2.8e-74 283.9 664 32.2
COL.COLO4_23486 Corchorus olitorius HOM05D004112 ORTHO05D004739 6.2e-74 282.7 643 33.9
CsaV3_5G030980 Cucumis sativus L. HOM05D004112 ORTHO05D004739 1.1e-73 282.0 627 33.3
RcHm_v2.0_Chr4g0432751 Rosa chinensis HOM05D004112 ORTHO05D004739 1.1e-73 282.0 698 34.2
arahy.Tifrunner.gnm1.ann1.B4WRN4 Arachis hypogaea HOM05D004112 ORTHO05D004739 5.8e-72 276.2 643 32.8
FAN07G2897 Fragaria x ananassa HOM05D004112 ORTHO05D004739 1.3e-71 275.0 688 32.6
FAN12G3846 Fragaria x ananassa HOM05D004112 ORTHO05D004739 1.7e-71 274.6 689 33.5
CiPaw.06G066400 Carya illinoinensis HOM05D004112 ORTHO05D004739 2.2e-71 274.2 626 32.1
Hund25400 Selenicereus undatus HOM05D004112 ORTHO05D004739 3.8e-71 273.5 637 33.9
Potri.008G185100 Populus trichocarpa HOM05D004112 ORTHO05D004739 8.4e-71 272.3 674 30.4
arahy.Tifrunner.gnm1.ann1.5BR3PR Arachis hypogaea HOM05D004112 ORTHO05D004739 2.4e-70 270.8 674 31.8
MELO3C011937.2 Cucumis melo HOM05D004112 ORTHO05D004739 3.2e-70 270.4 633 32.2
FAN17G0775 Fragaria x ananassa HOM05D004112 ORTHO05D004739 3.2e-70 270.4 689 32.8
FvH4_4g25440 Fragaria vesca HOM05D004112 ORTHO05D004739 5.4e-70 269.6 689 32.8
Ciclev10030867m.g Citrus clementina HOM05D004112 ORTHO05D004739 4.6e-69 266.5 710 33.5
Potri.010G048700 Populus trichocarpa HOM05D004112 ORTHO05D004739 6.0e-69 266.2 678 30.2
DCAR_007043 Daucus carota HOM05D004112 ORTHO05D004739 7.8e-69 265.8 648 33.2
Sed0023093 Sechium edule HOM05D004112 ORTHO05D004739 3.9e-68 263.5 647 30.9
Eucgr.H02474 Eucalyptus grandis HOM05D004112 ORTHO05D004739 6.6e-68 262.7 648 35.8
SGA_v2.0_scaffold476G52145 Striga asiatica HOM05D004112 ORTHO05D004739 6.6e-68 262.7 713 29.7
EL10Ac6g13879 Beta vulgaris HOM05D004112 ORTHO05D004739 1.9e-67 261.2 674 32.5
Lj6g0012261 Lotus japonicus HOM05D004112 ORTHO05D004739 1.9e-67 261.2 676 31.4
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 4.3e-67 260.0 668 30.1
CANSAT01G3092 Cannabis sativa HOM05D004112 ORTHO05D004739 5.6e-67 259.6 690 31.4
Lalb_Chr08g0230891 Lupinus albus HOM05D004112 ORTHO05D004739 2.4e-65 254.2 641 34.2
VMungo1383G0113 Vigna mungo HOM05D004112 ORTHO05D004739 3.1e-65 253.8 638 35.0
Glyma.11G243800 Glycine max HOM05D004112 ORTHO05D004739 5.3e-65 253.1 658 31.8
PGR119G0183 Punica granatum HOM05D004112 ORTHO05D004739 1.2e-64 251.9 702 33.9
Hund06041 Selenicereus undatus HOM05D004112 ORTHO05D004739 5.8e-64 249.6 739 30.0
ATR0122G036 Amborella trichopoda HOM05D004112 ORTHO05D004739 7.6e-64 249.2 653 33.7
A06p08680 Brassica napus HOM05D000421 ORTHO05D004739 9.9e-64 248.8 612 35.5
PSO478G3171 Papaver somniferum HOM05D004112 ORTHO05D004739 9.9e-64 248.8 626 30.8
Phvul.001G255700 Phaseolus vulgaris HOM05D004112 ORTHO05D004739 9.9e-64 248.8 696 31.3
BraA06t24065Z Brassica rapa HOM05D000421 ORTHO05D004739 2.2e-63 247.7 610 35.4
FAN22G2105 Fragaria x ananassa HOM05D004112 ORTHO05D004739 2.2e-63 247.7 685 31.7
Lalb_Chr23g0277631 Lupinus albus HOM05D004112 ORTHO05D004739 6.4e-63 246.1 689 34.5
Ah.02g130260 Amaranthus hybridus HOM05D004112 ORTHO05D004739 2.1e-61 241.1 686 32.7
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 2.7e-61 240.7 623 34.5
ECA233G4780 Erigeron canadensis HOM05D000002 ORTHO05D000001 6.0e-61 239.6 645 34.0
Migut.K00616 Erythranthe guttata HOM05D004112 ORTHO05D004739 1.7e-60 238.0 687 33.9
ClCG08G017620 Citrullus lanatus HOM05D004112 ORTHO05D004739 3.3e-59 233.8 503 33.0
HanXRQChr12g0371721 Helianthus annuus HOM05D004112 ORTHO05D004739 1.3e-58 231.9 630 34.4
AL1G24680 Arabidopsis lyrata HOM05D004112 ORTHO05D004739 2.1e-58 231.1 608 35.2
BcaC05g25092 Brassica carinata HOM05D004112 ORTHO05D004739 3.6e-58 230.3 623 35.0
C05p10290 Brassica napus HOM05D000421 ORTHO05D004739 8.1e-58 229.2 611 34.9
Psat5g091840 Pisum sativum HOM05D004112 ORTHO05D004739 1.1e-57 228.8 649 33.7
THA.LOC104805277 Tarenaya hassleriana HOM05D004112 ORTHO05D004739 1.1e-57 228.8 638 32.3
Thhalv10007108m.g Eutrema salsugineum HOM05D004112 ORTHO05D004739 1.4e-57 228.4 636 33.2
Sp1g11580 Schrenkiella parvula HOM05D004112 ORTHO05D004739 1.4e-57 228.4 622 32.6
BolC5t29775H Brassica oleracea HOM05D000421 ORTHO05D004739 2.4e-57 227.6 613 35.1
CARHR013360 Cardamine hirsuta HOM05D004112 ORTHO05D004739 3.1e-57 227.3 624 36.5
ECA246G3212 Erigeron canadensis HOM05D004112 ORTHO05D004739 5.8e-56 223.0 575 33.2
Peaxi162Scf00128g00449 Petunia axillaris HOM05D004112 ORTHO05D004739 3.8e-55 220.3 736 29.9
Carub.0001s1278 Capsella rubella HOM05D004112 ORTHO05D004739 6.4e-55 219.5 611 34.4
Cfa009235 Carpinus fangiana HOM05D004112 ORTHO05D004739 4.2e-54 216.9 597 32.8
Sed0015104 Sechium edule HOM05D004112 ORTHO05D004739 7.1e-54 216.1 486 31.1
AUR62024236 Chenopodium quinoa HOM05D004112 ORTHO05D004739 2.1e-53 214.5 748 27.9
AT1G13030 Arabidopsis thaliana HOM05D004112 ORTHO05D004739 3.0e-52 210.7 626 34.0
BraA09t41696Z Brassica rapa HOM05D004112 ORTHO05D004739 3.0e-52 210.7 612 35.1
Zm00001eb421500 Zea mays HOM05D004112 ORTHO05D004739 3.0e-52 210.7 634 29.3
Oeu057548.1 Olea europaea HOM05D004112 ORTHO05D004739 1.1e-51 208.8 623 27.9
DCAR_026503 Daucus carota HOM05D004112 ORTHO05D004739 1.5e-51 208.4 602 28.6
Nitab4.5_0000524g0060 Nicotiana tabacum HOM05D004112 ORTHO05D004739 1.9e-51 208.0 800 30.5
BolC8t52227H Brassica oleracea HOM05D004112 ORTHO05D004739 1.3e-50 205.3 622 33.1
TPR.G30525 Trifolium pratense HOM05D004112 ORTHO05D004739 8.1e-50 202.6 707 29.0
MELO3C010699.2 Cucumis melo HOM05D004112 ORTHO05D004739 1.4e-49 201.8 578 28.7
A09p63460 Brassica napus HOM05D004112 ORTHO05D004739 3.1e-49 200.7 636 33.0
CsaV3_2G025020 Cucumis sativus L. HOM05D004112 ORTHO05D004739 3.1e-49 200.7 584 27.6
Aa31LG1G1770 Aethionema arabicum HOM05D004112 ORTHO05D004739 1.2e-48 198.7 619 35.1
HanXRQChr11g0329171 Helianthus annuus HOM05D004112 ORTHO05D004739 2.0e-48 198.0 555 33.3
Medtr3g086550 Medicago truncatula HOM05D004112 ORTHO05D004739 2.0e-48 198.0 767 26.9
AUR62005505 Chenopodium quinoa HOM05D004112 ORTHO05D004739 4.5e-48 196.8 674 28.3
Zm00001eb084730 Zea mays HOM05D004112 ORTHO05D004739 7.6e-48 196.1 670 31.8
BcaB08g34232 Brassica carinata HOM05D004112 ORTHO05D004739 2.2e-47 194.5 612 33.0
Lsat_1_v5_gn_3_30221 Lactuca sativa HOM05D004112 ORTHO05D004739 2.9e-47 194.1 572 30.6
Nitab4.5_0001978g0040 Nicotiana tabacum HOM05D004112 ORTHO05D004739 8.4e-47 192.6 852 27.1
Lsat_1_v5_gn_8_152820 Lactuca sativa HOM05D004112 ORTHO05D004739 4.6e-45 186.8 680 27.8
CDE09G0121 Ceratophyllum demersum HOM05D004112 ORTHO05D004739 1.0e-44 185.7 653 28.0
Glyma.18G013300 Glycine max HOM05D004112 ORTHO05D004739 1.5e-43 181.8 306 40.5
SalBow2G2073 Salvia bowleyana HOM05D004112 ORTHO05D004739 1.9e-43 181.4 721 26.1
Solyc05g013740.3 Solanum lycopersicum HOM05D004112 ORTHO05D004739 4.3e-43 180.3 834 27.6
Manes.12G021100 Manihot esculenta HOM05D004112 ORTHO05D004739 9.6e-43 179.1 295 40.3
Sopen05g008660 Solanum pennellii HOM05D004112 ORTHO05D004739 6.2e-42 176.4 836 25.5
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 8.2e-42 176.0 527 33.8
HanXRQChr17g0539921 Helianthus annuus HOM05D004112 ORTHO05D004739 1.8e-41 174.9 583 33.8
Ca_25135_v3 Cicer arietinum L. HOM05D004112 ORTHO05D004739 3.4e-40 170.6 597 29.0
Hma1.2p1_0815F.1_g222700 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 6.5e-39 166.4 140 60.7
Os12g0288600 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 1.3e-36 158.7 336 34.8
unitig_22.g6943 Utricularia gibba HOM05D004112 ORTHO05D004739 7.4e-35 152.9 722 25.6
Hma1.2p1_0079F.1_g041130 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 3.1e-33 147.5 464 28.9
Nitab4.5_0005916g0010 Nicotiana tabacum HOM05D002060 ORTHO05D002098 1.4e-30 138.7 582 27.8
Peaxi162Scf00117g00212 Petunia axillaris HOM05D004112 ORTHO05D004739 1.4e-30 138.7 548 25.7
Solyc02g067090.4 Solanum lycopersicum HOM05D004112 ORTHO05D004739 3.6e-29 134.0 573 26.5
Sopen02g016280 Solanum pennellii HOM05D004112 ORTHO05D004739 4.6e-29 133.7 145 51.0
PGSC0003DMG400025149 Solanum tuberosum HOM05D004112 ORTHO05D004739 7.9e-29 132.9 582 27.5
Oeu059775.2 Olea europaea HOM05D004112 ORTHO05D004739 1.0e-28 132.5 141 50.4
SEGI_13723 Sequoiadendron giganteum HOM05D004112 ORTHO05D004739 5.1e-28 130.2 244 36.5
SHI17819 Sapria himalayana HOM05D004112 ORTHO05D004739 3.3e-27 127.5 143 48.3
CAN.G979.7 Capsicum annuum HOM05D004112 ORTHO05D004739 9.7e-27 125.9 143 48.3
HPP92_024299 Vanilla planifolia HOM05D004112 ORTHO05D004739 8.2e-26 122.9 314 34.4
CAN.G272.6 Capsicum annuum HOM05D004112 ORTHO05D004739 1.4e-25 122.1 218 36.7
Hma1.2p1_0815F.1_g222710 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 1.8e-25 121.7 159 41.5
Pp3c16_2520 Physcomitrium patens HOM05D004112 ORTHO05D004739 1.5e-24 118.6 746 22.7
Nitab4.5_0000212g0200 Nicotiana tabacum HOM05D002060 ORTHO05D002098 7.7e-24 116.3 176 42.6
Lsat_1_v5_gn_8_152740 Lactuca sativa HOM05D000214 ORTHO05D000131 6.5e-23 113.2 139 46.0
Mapoly0010s0205 Marchantia polymorpha HOM05D004112 ORTHO05D004739 8.5e-23 112.8 232 33.2
HPP92_011297 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.2e-21 109.0 525 25.0
Ah.08g219390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 1.4e-20 105.5 174 39.1
C05p09990 Brassica napus HOM05D004112 ORTHO05D004739 1.4e-20 105.5 382 26.2
Sed0006330 Sechium edule HOM05D004112 ORTHO05D004739 3.7e-18 97.4 316 28.5
HPP92_011276 Vanilla planifolia HOM05D004112 ORTHO05D004739 6.3e-18 96.7 466 24.5
Hma1.2p1_0900F.1_g234620 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 3.1e-17 94.4 79 57.0
Lj2C1008T10 Lonicera japonica HOM05D004112 ORTHO05D004739 1.2e-16 92.4 79 58.2
Os12g0288801 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 1.2e-16 92.4 85 50.6
Ah.03g133390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 7.7e-16 89.7 286 27.3
Hma1.2p1_0900F.1_g234630 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 3.8e-15 87.4 66 66.7
SHI17828 Sapria himalayana HOM05D004112 ORTHO05D004739 2.1e-13 81.6 88 48.9
HPP92_015941 Vanilla planifolia HOM05D004112 ORTHO05D004739 2.7e-13 81.3 97 49.5
HPP92_015914 Vanilla planifolia HOM05D004112 ORTHO05D004739 3.6e-13 80.9 97 49.5
BcaC05g25410 Brassica carinata HOM05D004112 ORTHO05D004739 4.7e-13 80.5 139 36.7
AagrBONN_evm.TU.Sc2ySwM_368.3384 Anthoceros agrestis HOM05D004112 ORTHO05D004739 8.0e-13 79.7 646 20.4
C05p12860 Brassica napus HOM05D000639 ORTHO05D032511 3.0e-12 77.8 81 46.9
Lj3P1060T39 Lonicera japonica HOM05D004112 ORTHO05D004739 8.8e-12 76.3 182 40.1
Peaxi162Scf00067g00115 Petunia axillaris HOM05D004112 ORTHO05D004739 5.7e-11 73.6 131 35.9
CsaV3_2G034300 Cucumis sativus L. HOM05D004112 ORTHO05D004739 1.3e-10 72.4 162 32.1
Pp3c26_4720 Physcomitrium patens HOM05D027689 ORTHO05D018028 1.7e-10 72.0 83 44.6
Pp3c4_25420 Physcomitrium patens HOM05D004112 ORTHO05D004739 2.8e-10 71.2 87 42.5
BolC5t29741H Brassica oleracea HOM05D004112 ORTHO05D004739 4.8e-10 70.5 344 33.1
BolC5t29747H Brassica oleracea HOM05D004112 ORTHO05D027101 4.8e-10 70.5 344 33.1
CANSAT56G3164 Cannabis sativa HOM05D004112 ORTHO05D004739 1.4e-09 68.9 110 39.1
BcaC05g25060 Brassica carinata HOM05D021208 ORTHO05D027101 7.0e-09 66.6 90 45.6
PGR042G2157 Punica granatum HOM05D004112 ORTHO05D004739 3.5e-08 64.3 61 47.5
BcaC05g25061 Brassica carinata HOM05D004112 ORTHO05D027101 4.5e-08 63.9 91 47.3
Actinidia26737 Actinidia chinensis HOM05D004112 ORTHO05D004739 2.9e-07 61.2 144 38.9


User provided reference genes

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