Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0108000 Rhododendron simsii HOM05D003570 ORTHO05D004207 2.4e-162 575.5 294 100.0
Actinidia37450 Actinidia chinensis HOM05D003570 ORTHO05D004207 1.6e-110 403.3 283 72.4
vmacro16171 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 2.6e-108 396.0 263 78.7
vmacro16173 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 2.8e-102 375.9 263 75.3
vmacro17618 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 4.1e-90 335.5 286 64.7
Hma1.2p1_1533F.1_g289360 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 3.6e-86 322.4 282 58.2
Sopen05g008710 Solanum pennellii HOM05D003570 ORTHO05D004207 3.1e-85 319.3 279 59.9
Thecc.02G265200 Theobroma cacao HOM05D003570 ORTHO05D004207 5.8e-84 315.1 290 58.3
Lj3A151T25 Lonicera japonica HOM05D003570 ORTHO05D004207 7.5e-84 314.7 296 55.7
Lj6A815G40 Lonicera japonica HOM05D003570 ORTHO05D004207 7.5e-84 314.7 296 55.7
PGSC0003DMG400016968 Solanum tuberosum HOM05D003570 ORTHO05D004207 9.8e-84 314.3 279 59.1
Nitab4.5_0002373g0110 Nicotiana tabacum HOM05D003570 ORTHO05D004207 1.7e-83 313.5 277 58.1
Duzib248G0757 Durio zibethinus HOM05D003570 ORTHO05D004207 2.2e-83 313.2 290 57.6
Peaxi162Scf00128g00550 Petunia axillaris HOM05D003570 ORTHO05D004207 3.7e-83 312.4 276 58.7
Manes.13G020900 Manihot esculenta HOM05D003570 ORTHO05D004207 5.4e-82 308.5 293 57.0
Ciclev10030923m.g Citrus clementina HOM05D003570 ORTHO05D004207 1.6e-81 307.0 293 55.6
PGR102G1250 Punica granatum HOM05D003570 ORTHO05D004207 3.5e-81 305.8 274 56.9
TAR622G0746 Trochodendron aralioides HOM05D003570 ORTHO05D004207 4.6e-81 305.4 300 56.3
COL.COLO4_23499 Corchorus olitorius HOM05D003570 ORTHO05D004207 6.0e-81 305.1 269 58.7
CAN.G1572.8 Capsicum annuum HOM05D003570 ORTHO05D004207 7.8e-81 304.7 252 61.1
Haze_12279 Corylus avellana HOM05D003570 ORTHO05D004207 1.0e-80 304.3 290 55.9
Potri.008G183500 Populus trichocarpa HOM05D003570 ORTHO05D004207 1.0e-80 304.3 261 60.2
Oeu038645.2 Olea europaea HOM05D003570 ORTHO05D004207 2.3e-80 303.1 268 59.0
Eucgr.B03244 Eucalyptus grandis HOM05D003570 ORTHO05D004207 8.6e-80 301.2 283 54.4
Nn4g22548 Nelumbo nucifera HOM05D003570 ORTHO05D004207 1.1e-79 300.8 297 56.2
Dinv15203 Davidia involucrata HOM05D003570 ORTHO05D004207 3.3e-79 299.3 235 65.5
Gorai.012G173500 Gossypium raimondii HOM05D003570 ORTHO05D004207 3.3e-79 299.3 290 54.8
Gohir.D04G180400 Gossypium hirsutum HOM05D003570 ORTHO05D004207 4.3e-79 298.9 290 54.8
Prupe.1G241900 Prunus persica HOM05D003570 ORTHO05D004207 7.3e-79 298.1 265 58.1
Lalb_Chr08g0230861 Lupinus albus HOM05D003570 ORTHO05D004207 1.2e-78 297.4 267 57.7
VMungo1383G2895 Vigna mungo HOM05D003570 ORTHO05D004207 2.8e-78 296.2 265 57.0
Gohir.A04G137200 Gossypium hirsutum HOM05D003570 ORTHO05D004207 6.2e-78 295.0 292 54.8
Nitab4.5_0001978g0070 Nicotiana tabacum HOM05D003570 ORTHO05D004207 8.1e-78 294.7 282 55.0
Sabra08G0139700 Salix brachista HOM05D003570 ORTHO05D004207 1.4e-77 293.9 268 58.2
Phvul.001G256000 Phaseolus vulgaris HOM05D003570 ORTHO05D004207 2.3e-77 293.1 265 56.6
Ca_25131_v3 Cicer arietinum L. HOM05D001269 ORTHO05D001083 3.1e-77 292.7 270 53.3
Lsat_1_v5_gn_0_32260 Lactuca sativa HOM05D003570 ORTHO05D004207 4.0e-77 292.4 264 56.4
Sed0006332 Sechium edule HOM05D003570 ORTHO05D004207 8.9e-77 291.2 291 51.9
DCAR_026498 Daucus carota HOM05D003570 ORTHO05D004207 1.5e-76 290.4 254 59.4
Migut.K00625 Erythranthe guttata HOM05D003570 ORTHO05D004207 2.0e-76 290.0 281 55.5
Psat5g092360 Pisum sativum HOM05D003570 ORTHO05D004207 3.4e-76 289.3 271 52.8
GSVIVG01000572001 Vitis vinifera HOM05D003570 ORTHO05D004207 3.4e-76 289.3 298 52.7
MSTRG.553 Avicennia marina HOM05D003570 ORTHO05D004207 9.9e-76 287.7 266 57.1
CiPaw.06G064800 Carya illinoinensis HOM05D003570 ORTHO05D004207 2.9e-75 286.2 290 52.4
arahy.Tifrunner.gnm1.ann1.I1BHDP Arachis hypogaea HOM05D003570 ORTHO05D004207 6.4e-75 285.0 266 55.3
Sc04g0009680 Simmondsia chinensis HOM05D003570 ORTHO05D004207 6.4e-75 285.0 280 52.5
arahy.Tifrunner.gnm1.ann1.8897EQ Arachis hypogaea HOM05D003570 ORTHO05D004207 8.4e-75 284.6 266 55.3
CsaV3_5G030790 Cucumis sativus L. HOM05D003570 ORTHO05D004207 1.1e-74 284.3 292 52.1
MD13G1104500 Malus domestica HOM05D003570 ORTHO05D004207 5.4e-74 282.0 293 51.9
Medtr3g086460 Medicago truncatula HOM05D003570 ORTHO05D004207 5.4e-74 282.0 270 53.7
Cc11_g16040 Coffea canephora HOM05D003570 ORTHO05D004207 7.1e-74 281.6 267 53.9
TWI36G1196 Tripterygium wilfordii HOM05D003570 ORTHO05D004207 7.1e-74 281.6 272 55.5
TPR.G35967 Trifolium pratense HOM05D003570 ORTHO05D004207 1.2e-73 280.8 266 53.0
THA.LOC104805269 Tarenaya hassleriana HOM05D003570 ORTHO05D004207 2.1e-73 280.0 256 53.9
Cpa.g.sc13.88 Carica papaya HOM05D003570 ORTHO05D004207 3.5e-73 279.3 273 54.2
HanXRQChr08g0208421 Helianthus annuus HOM05D003570 ORTHO05D004207 3.5e-73 279.3 281 53.4
SGA_v2.0_scaffold22G09799 Striga asiatica HOM05D003570 ORTHO05D004207 3.5e-73 279.3 262 55.3
ClCG05G026050 Citrullus lanatus HOM05D003570 ORTHO05D004207 7.8e-73 278.1 290 51.7
PSO063G4933 Papaver somniferum HOM05D003570 ORTHO05D004207 1.3e-72 277.3 272 53.7
Glyma.11G244100 Glycine max HOM05D003570 ORTHO05D004207 1.7e-72 276.9 289 50.5
PSO754G0035 Papaver somniferum HOM05D003570 ORTHO05D004207 3.0e-72 276.2 293 50.5
PSO339G2835 Papaver somniferum HOM05D003570 ORTHO05D004207 3.9e-72 275.8 276 52.9
MELO3C011924.2 Cucumis melo HOM05D003570 ORTHO05D004207 5.1e-72 275.4 276 52.9
Lj4g0018208 Lotus japonicus HOM05D003570 ORTHO05D004207 6.6e-72 275.0 268 54.5
Oeu038646.1 Olea europaea HOM05D003570 ORTHO05D004207 6.6e-72 275.0 264 56.1
CANSAT11G1164 Cannabis sativa HOM05D003570 ORTHO05D004207 1.5e-71 273.9 292 50.0
AUR62024231 Chenopodium quinoa HOM05D003570 ORTHO05D004207 2.5e-71 273.1 278 53.2
QL03p056574 Quercus lobata HOM05D003570 ORTHO05D004207 2.5e-71 273.1 287 52.3
Lj6g0027950 Lotus japonicus HOM05D003570 ORTHO05D004207 4.3e-71 272.3 267 53.2
AUR62005511 Chenopodium quinoa HOM05D003570 ORTHO05D004207 9.6e-71 271.2 292 52.4
COL.COLO4_27904 Corchorus olitorius HOM05D003570 ORTHO05D004207 2.1e-70 270.0 271 53.5
ECA233G5166 Erigeron canadensis HOM05D002671 ORTHO05D002985 2.1e-70 270.0 273 52.0
PSO063G1535 Papaver somniferum HOM05D003570 ORTHO05D004207 1.8e-69 266.9 272 52.2
EL10As2g23162 Beta vulgaris HOM05D003570 ORTHO05D004207 1.2e-68 264.2 279 52.0
RcHm_v2.0_Chr4g0432651 Rosa chinensis HOM05D003570 ORTHO05D004207 3.4e-68 262.7 257 53.3
MBI04_g13681_MAGBIO Magnolia biondii HOM05D003570 ORTHO05D004207 4.4e-68 262.3 253 55.3
Nitab4.5_0004117g0010 Nicotiana tabacum HOM05D003570 ORTHO05D004207 2.9e-67 259.6 287 49.8
QL03p056953 Quercus lobata HOM05D003570 ORTHO05D004207 4.9e-67 258.8 253 53.4
FAN07G1326 Fragaria x ananassa HOM05D003570 ORTHO05D004207 4.2e-66 255.8 272 49.6
FAN12G2286 Fragaria x ananassa HOM05D003570 ORTHO05D004207 4.2e-66 255.8 272 49.6
FvH4_4g25360 Fragaria vesca HOM05D003570 ORTHO05D004207 9.3e-66 254.6 272 49.6
FAN22G0389 Fragaria x ananassa HOM05D003570 ORTHO05D004207 2.1e-65 253.4 272 49.3
FAN17G0862 Fragaria x ananassa HOM05D003570 ORTHO05D004207 6.0e-65 251.9 272 48.9
Aqoxy7G03799 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 2.5e-63 246.5 255 50.2
ATR0824G009 Amborella trichopoda HOM05D003570 ORTHO05D004207 1.3e-62 244.2 271 49.4
PSO063G3251 Papaver somniferum HOM05D003570 ORTHO05D004207 1.7e-59 233.8 281 48.4
Atru.chr11.2174 Acer truncatum HOM05D003570 ORTHO05D004207 5.4e-58 228.8 284 45.4
Aqoxy5G03688 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 9.3e-58 228.0 232 51.3
Aqoxy1G03220 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 7.9e-57 224.9 274 47.4
CSS0045431 Camellia sinensis var. sinensis HOM05D003570 ORTHO05D004207 2.3e-56 223.4 155 72.3
SEGI_05718 Sequoiadendron giganteum HOM05D003570 ORTHO05D004207 2.5e-55 219.9 251 45.4
SHI04269 Sapria himalayana HOM05D003570 ORTHO05D004207 1.3e-54 217.6 271 45.0
Zm00001eb212370 Zea mays HOM05D003570 ORTHO05D004207 4.9e-51 205.7 270 42.2
BcaC07g41664 Brassica carinata HOM05D003570 ORTHO05D004207 1.1e-50 204.5 292 41.1
A09p63350 Brassica napus HOM05D003570 ORTHO05D004207 1.9e-50 203.8 292 41.1
C08p46780 Brassica napus HOM05D003570 ORTHO05D004207 1.9e-50 203.8 292 41.1
BraA09t41684Z Brassica rapa HOM05D003570 ORTHO05D004207 1.9e-50 203.8 292 41.1
BolC8t52217H Brassica oleracea HOM05D003570 ORTHO05D004207 2.1e-49 200.3 294 40.8
CARHR013490 Cardamine hirsuta HOM05D003570 ORTHO05D004207 2.1e-49 200.3 294 41.2
AL1G24790 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 2.7e-49 199.9 250 43.6
Zm00001eb062020 Zea mays HOM05D003570 ORTHO05D004207 3.5e-49 199.5 270 41.1
Carub.0001s1286 Capsella rubella HOM05D003570 ORTHO05D004207 4.6e-49 199.1 287 41.1
Aa31LG1G1680 Aethionema arabicum HOM05D003570 ORTHO05D004207 1.0e-48 198.0 293 42.0
Os02g0596100 Oryza sativa ssp. japonica HOM05D003570 ORTHO05D004207 3.9e-48 196.1 261 42.9
Haze_11814 Corylus avellana HOM05D001314 ORTHO05D001165 5.1e-48 195.7 276 45.3
AT1G13120 Arabidopsis thaliana HOM05D003570 ORTHO05D004207 6.7e-48 195.3 250 42.4
CDE06G1553 Ceratophyllum demersum HOM05D003570 ORTHO05D004207 8.7e-48 194.9 177 52.5
CBR_g38118 Chara braunii HOM05D003570 ORTHO05D004207 8.7e-48 194.9 262 41.2
Thhalv10007079m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 3.3e-47 193.0 285 40.7
Haze_20779 Corylus avellana HOM05D003570 ORTHO05D004207 1.1e-45 188.0 249 44.2
unitig_22.g6426 Utricularia gibba HOM05D003570 ORTHO05D004207 1.5e-44 184.1 177 51.4
Pp3c9_21420 Physcomitrium patens HOM05D003570 ORTHO05D004207 5.8e-44 182.2 258 39.5
Mapoly0004s0250 Marchantia polymorpha HOM05D003570 ORTHO05D004207 4.9e-43 179.1 257 36.6
Sp1g11650 Schrenkiella parvula HOM05D003570 ORTHO05D004207 4.9e-43 179.1 257 40.5
Thhalv10001133m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 4.6e-41 172.6 270 39.6
Sopen04g013730 Solanum pennellii HOM05D003570 ORTHO05D004207 2.5e-34 150.2 110 62.7
AL6G47680 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 7.2e-34 148.7 213 42.7
SMO367G0645 Selaginella moellendorffii HOM05D003570 ORTHO05D004207 7.2e-34 148.7 265 35.1
EL10Ac8g19584 Beta vulgaris HOM05D003570 ORTHO05D004207 1.2e-33 147.9 119 62.2
CiPaw.02G032100 Carya illinoinensis HOM05D003570 ORTHO05D004207 2.5e-31 140.2 291 35.1
Cre06.g300900 Chlamydomonas reinhardtii HOM05D003570 ORTHO05D004207 1.4e-29 134.4 258 32.6
AagrBONN_evm.TU.Sc2ySwM_362.2178 Anthoceros agrestis HOM05D003570 ORTHO05D004207 1.5e-28 131.0 170 37.6
Medtr7g034350 Medicago truncatula HOM05D003570 ORTHO05D004207 1.0e-24 118.2 203 37.9
Hma1.2p1_0054F.1_g030990 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 1.4e-24 117.9 89 58.4
MCO05G059 Micromonas commoda HOM05D003570 ORTHO05D004207 1.5e-23 114.4 264 29.2
TAR374G0522 Trochodendron aralioides HOM05D003570 ORTHO05D004207 4.4e-23 112.8 99 60.6
Actinidia15111 Actinidia chinensis HOM05D003570 ORTHO05D004207 1.3e-22 111.3 86 69.8
AL2G22720 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 8.2e-22 108.6 140 45.7
FAN08G3485 Fragaria x ananassa HOM05D003570 ORTHO05D004207 4.1e-21 106.3 122 49.2
Actinidia15112 Actinidia chinensis HOM05D003570 ORTHO05D004207 5.3e-21 105.9 90 63.3
FAN08G0154 Fragaria x ananassa HOM05D003570 ORTHO05D004207 4.5e-20 102.8 116 44.0
PRCOL_00001147 Prasinoderma coloniale HOM05D003570 ORTHO05D004207 1.1e-18 98.2 276 29.3
BolC5t29767H Brassica oleracea HOM05D003570 ORTHO05D004207 6.1e-17 92.4 190 32.6
Glyma.18G013000 Glycine max HOM05D003570 ORTHO05D004207 3.9e-16 89.7 79 58.2
BcaC05g25084 Brassica carinata HOM05D003570 ORTHO05D004207 6.7e-16 89.0 212 32.1
FvH4_5g15750 Fragaria vesca HOM05D003570 ORTHO05D004207 1.8e-13 80.9 71 60.6
Sp2g10400 Schrenkiella parvula HOM05D003570 ORTHO05D004207 1.2e-12 78.2 110 41.8
Dinv11043 Davidia involucrata HOM05D003570 ORTHO05D004207 1.6e-12 77.8 74 50.0
C05p10220 Brassica napus HOM05D003570 ORTHO05D004207 1.7e-11 74.3 115 34.8
MD05G1151500 Malus domestica HOM05D003570 ORTHO05D004207 1.7e-11 74.3 49 75.5
FAN13G1935 Fragaria x ananassa HOM05D003570 ORTHO05D004207 5.0e-11 72.8 73 49.3
EL10Ac1g01653 Beta vulgaris HOM05D003570 ORTHO05D004207 1.6e-09 67.8 49 67.3
AagrBONN_evm.TU.Sc2ySwM_344.4464 Anthoceros agrestis HOM05D003570 ORTHO05D004207 1.2e-07 61.6 113 30.1
Solyc04g026000.2 Solanum lycopersicum HOM05D003570 ORTHO05D004207 1.7e-06 57.8 128 31.2


User provided reference genes

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