Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0105700 Rhododendron simsii HOM05D005422 ORTHO05D006578 0.0e+00 1315.4 647 100.0
CSS0029300 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 3.7e-277 958.0 657 75.8
CSS0043806 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 9.2e-276 953.4 657 75.5
Actinidia33261 Actinidia chinensis HOM05D005422 ORTHO05D006578 8.7e-258 893.6 657 71.4
Dinv14796 Davidia involucrata HOM05D005422 ORTHO05D006578 4.7e-256 887.9 667 69.1
vmacro16136 Vaccinium macrocarpon HOM05D005422 ORTHO05D006578 2.0e-246 855.9 523 82.6
Hma1.2p1_1340F.1_g276720 Hydrangea macrophylla HOM05D005422 ORTHO05D006578 1.7e-237 826.2 647 66.5
PGSC0003DMG400017439 Solanum tuberosum HOM05D005422 ORTHO05D006578 1.8e-231 806.2 656 64.0
Sopen05g009590 Solanum pennellii HOM05D005422 ORTHO05D006578 1.7e-229 799.7 657 63.9
Solyc05g014540.3 Solanum lycopersicum HOM05D005422 ORTHO05D006578 8.4e-229 797.3 656 63.6
Lj6C821T7 Lonicera japonica HOM05D005422 ORTHO05D006578 1.3e-226 790.0 655 64.6
GSVIVG01010354001 Vitis vinifera HOM05D005422 ORTHO05D006578 3.7e-224 781.9 662 62.5
Oeu056686.1 Olea europaea HOM05D005422 ORTHO05D006578 2.0e-222 776.2 656 61.7
CAN.G163.4 Capsicum annuum HOM05D005422 ORTHO05D006578 2.2e-221 772.7 656 61.7
Peaxi162Scf00128g00843 Petunia axillaris HOM05D005422 ORTHO05D006578 7.2e-220 767.7 651 61.3
QL03p054803 Quercus lobata HOM05D005422 ORTHO05D006578 2.1e-219 766.1 658 60.9
Cc11_g16560 Coffea canephora HOM05D005422 ORTHO05D006578 6.1e-219 764.6 653 62.3
Cfa009312 Carpinus fangiana HOM05D005422 ORTHO05D006578 8.8e-218 760.8 662 60.4
Migut.K00694 Erythranthe guttata HOM05D005422 ORTHO05D006578 1.5e-217 760.0 656 60.8
CiPaw.06G099500 Carya illinoinensis HOM05D005422 ORTHO05D006578 3.4e-214 748.8 660 58.6
Cpa.g.sc43.8 Carica papaya HOM05D005422 ORTHO05D006578 5.9e-214 748.0 657 59.2
Nitab4.5_0000240g0030 Nicotiana tabacum HOM05D005422 ORTHO05D006578 7.7e-214 747.7 648 61.3
Manes.12G015200 Manihot esculenta HOM05D005422 ORTHO05D006578 1.2e-211 740.3 660 59.7
DCAR_024084 Daucus carota HOM05D005422 ORTHO05D006578 6.1e-211 738.0 607 63.8
HanXRQChr06g0174981 Helianthus annuus HOM05D005422 ORTHO05D006578 6.1e-211 738.0 653 59.3
TAR374G0226 Trochodendron aralioides HOM05D005422 ORTHO05D006578 1.5e-209 733.4 663 59.4
ECA246G0814 Erigeron canadensis HOM05D005422 ORTHO05D006578 1.3e-208 730.3 654 59.5
Nn3g16548 Nelumbo nucifera HOM05D005422 ORTHO05D006578 8.2e-208 727.6 663 58.7
Potri.010G055900 Populus trichocarpa HOM05D005422 ORTHO05D006578 1.1e-207 727.2 656 57.8
Lsat_1_v5_gn_3_29520 Lactuca sativa HOM05D005422 ORTHO05D006578 4.1e-207 725.3 647 58.9
Ciclev10030973m.g Citrus clementina HOM05D005422 ORTHO05D006578 5.3e-207 724.9 657 57.7
MSTRG.7977 Avicennia marina HOM05D005422 ORTHO05D006578 3.4e-206 722.2 658 59.0
RcHm_v2.0_Chr4g0431221 Rosa chinensis HOM05D005422 ORTHO05D006578 2.5e-204 716.1 661 57.6
Aqoxy5G03525 Aquilegia oxysepala HOM05D005422 ORTHO05D006578 1.6e-203 713.4 663 57.3
Eucgr.B03458 Eucalyptus grandis HOM05D005422 ORTHO05D006578 1.8e-202 709.9 660 57.7
Sc11g0000670 Simmondsia chinensis HOM05D005422 ORTHO05D006578 3.0e-202 709.1 657 56.8
Atru.chr11.2241 Acer truncatum HOM05D005422 ORTHO05D006578 5.7e-201 704.9 659 56.6
FAN22G2139 Fragaria x ananassa HOM05D005422 ORTHO05D000550 1.7e-200 703.4 660 57.3
Prupe.1G233700 Prunus persica HOM05D005422 ORTHO05D006578 1.7e-200 703.4 662 56.8
Thecc.02G273900 Theobroma cacao HOM05D005422 ORTHO05D006578 2.8e-200 702.6 660 56.7
Atru.chr11.2256 Acer truncatum HOM05D005422 ORTHO05D006578 6.3e-200 701.4 659 56.3
PGR102G2427 Punica granatum HOM05D005422 ORTHO05D006578 1.8e-199 699.9 657 55.4
Haze_12366 Corylus avellana HOM05D005422 ORTHO05D006578 5.3e-199 698.4 662 56.5
Sabra10G0049200 Salix brachista HOM05D005422 ORTHO05D006578 1.2e-198 697.2 651 57.0
Gorai.009G333700 Gossypium raimondii HOM05D005422 ORTHO05D006578 2.0e-198 696.4 662 56.8
Gohir.D05G312350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 5.0e-197 691.8 662 56.5
MD13G1111800 Malus domestica HOM05D005422 ORTHO05D006578 6.5e-197 691.4 656 56.6
Hund25438 Selenicereus undatus HOM05D005422 ORTHO05D006578 1.5e-196 690.3 692 54.2
FAN07G0746 Fragaria x ananassa HOM05D005422 ORTHO05D000550 8.0e-195 684.5 656 57.0
FvH4_4g24380 Fragaria vesca HOM05D005422 ORTHO05D006578 8.8e-194 681.0 637 57.6
Sed0011369 Sechium edule HOM05D005422 ORTHO05D006578 2.6e-193 679.5 662 55.0
AUR62024162 Chenopodium quinoa HOM05D005422 ORTHO05D006578 1.6e-190 670.2 649 55.6
arahy.Tifrunner.gnm1.ann1.FGLE2H Arachis hypogaea HOM05D005422 ORTHO05D006578 7.7e-190 667.9 661 54.8
arahy.Tifrunner.gnm1.ann1.3L5TD6 Arachis hypogaea HOM05D005422 ORTHO05D006578 1.3e-189 667.2 661 54.6
FAN12G3101 Fragaria x ananassa HOM05D005422 ORTHO05D006578 2.9e-189 666.0 729 51.9
MELO3C002044.2 Cucumis melo HOM05D005422 ORTHO05D006578 3.8e-189 665.6 662 54.5
FAN17G0355 Fragaria x ananassa HOM05D005422 ORTHO05D006578 8.5e-189 664.5 655 55.7
Medtr3g085750 Medicago truncatula HOM05D005422 ORTHO05D006578 8.5e-189 664.5 664 54.4
CsaV3_1G006150 Cucumis sativus L. HOM05D005422 ORTHO05D006578 1.1e-188 664.1 662 54.4
AUR62005568 Chenopodium quinoa HOM05D005422 ORTHO05D006578 1.9e-188 663.3 673 53.5
EL10Ac6g13434 Beta vulgaris HOM05D005422 ORTHO05D006578 3.6e-187 659.1 665 54.0
PSO782G4908 Papaver somniferum HOM05D005422 ORTHO05D006578 8.8e-186 654.4 661 52.5
Lj6g0021706 Lotus japonicus HOM05D005422 ORTHO05D006578 7.5e-185 651.4 664 54.4
SGA_v2.0_scaffold46G17410 Striga asiatica HOM05D005422 ORTHO05D006578 7.5e-185 651.4 657 54.0
Sp5g22630 Schrenkiella parvula HOM05D005422 ORTHO05D006578 2.2e-184 649.8 657 53.3
Duzib268G1013 Durio zibethinus HOM05D005422 ORTHO05D006578 2.8e-184 649.4 659 53.4
TPR.G22445 Trifolium pratense HOM05D005422 ORTHO05D006578 3.7e-184 649.0 663 54.0
MD16G1111400 Malus domestica HOM05D005422 ORTHO05D006578 4.8e-184 648.7 577 58.8
THA.LOC104807895 Tarenaya hassleriana HOM05D005422 ORTHO05D006578 8.3e-184 647.9 657 54.2
Ca_16485_v3 Cicer arietinum L. HOM05D005422 ORTHO05D006578 1.4e-183 647.1 662 53.2
Phvul.001G259300 Phaseolus vulgaris HOM05D005422 ORTHO05D006578 2.4e-183 646.4 669 52.9
PSO063G3748 Papaver somniferum HOM05D005422 ORTHO05D006578 4.1e-183 645.6 661 52.0
BcaB05g24303 Brassica carinata HOM05D005422 ORTHO05D006578 3.5e-182 642.5 660 53.0
Lalb_Chr04g0262801 Lupinus albus HOM05D005422 ORTHO05D006578 4.5e-182 642.1 659 52.5
Carub.0002s1397 Capsella rubella HOM05D005422 ORTHO05D006578 7.7e-182 641.3 657 53.9
Thhalv10018287m.g Eutrema salsugineum HOM05D005422 ORTHO05D006578 1.7e-181 640.2 661 52.8
A02p14390 Brassica napus HOM05D005422 ORTHO05D006578 2.3e-181 639.8 655 53.3
C02p23270 Brassica napus HOM05D005422 ORTHO05D006578 2.3e-181 639.8 655 53.3
BcaC03g14856 Brassica carinata HOM05D005422 ORTHO05D006578 2.9e-181 639.4 655 53.3
BraA02t06501Z Brassica rapa HOM05D005422 ORTHO05D006578 8.6e-181 637.9 655 53.1
MBI18_g30536_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 8.6e-181 637.9 699 50.4
Psat5g094440 Pisum sativum HOM05D005422 ORTHO05D006578 1.1e-180 637.5 664 52.7
AT1G67630 Arabidopsis thaliana HOM05D005422 ORTHO05D006578 2.5e-180 636.3 657 53.3
BolC2t08466H Brassica oleracea HOM05D005422 ORTHO05D006578 4.2e-180 635.6 655 53.0
COL.COLO4_23617 Corchorus olitorius HOM05D005422 ORTHO05D006578 7.2e-180 634.8 658 53.2
AL2G26300 Arabidopsis lyrata HOM05D005422 ORTHO05D006578 1.2e-179 634.0 657 53.6
CARHR060210 Cardamine hirsuta HOM05D005422 ORTHO05D006578 2.8e-179 632.9 661 52.8
Lj6g0001538 Lotus japonicus HOM05D005422 ORTHO05D006578 8.0e-179 631.3 665 52.6
Aa31LG4G12020 Aethionema arabicum HOM05D005422 ORTHO05D006578 3.0e-178 629.4 701 50.9
ClCG04G011650 Citrullus lanatus HOM05D005422 ORTHO05D006578 2.8e-176 622.9 653 52.7
VMungo1383G2526 Vigna mungo HOM05D005422 ORTHO05D006578 2.8e-176 622.9 668 52.5
Nitab4.5_0000581g0110 Nicotiana tabacum HOM05D005422 ORTHO05D006578 4.1e-175 619.0 642 53.6
DCAR_013710 Daucus carota HOM05D005422 ORTHO05D006578 7.8e-174 614.8 647 52.9
Glyma.18G009300 Glycine max HOM05D005422 ORTHO05D006578 2.9e-173 612.8 663 52.0
ATR0743G050 Amborella trichopoda HOM05D005422 ORTHO05D006578 5.6e-172 608.6 670 48.7
CANSAT01G0865 Cannabis sativa HOM05D005422 ORTHO05D006578 6.1e-171 605.1 524 58.6
Duzib251G0558 Durio zibethinus HOM05D005422 ORTHO05D006578 2.3e-162 576.6 662 49.8
unitig_749.g13303 Utricularia gibba HOM05D005422 ORTHO05D006578 9.8e-161 571.2 635 49.8
Gohir.A05G311350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 7.8e-158 561.6 662 48.9
Glyma.11G247900 Glycine max HOM05D005422 ORTHO05D006578 1.6e-142 510.8 522 54.2
SEGI_16764 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 5.3e-138 495.7 683 42.5
SEGI_31313 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 5.3e-138 495.7 683 42.5
SEGI_15215 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 3.4e-137 493.0 679 42.6
Zm00001eb409930 Zea mays HOM05D005422 ORTHO05D006578 3.8e-136 489.6 663 43.0
SHI17936 Sapria himalayana HOM05D005422 ORTHO05D006578 4.2e-127 459.5 655 42.7
HPP92_024300 Vanilla planifolia HOM05D005422 ORTHO05D006578 1.0e-125 454.9 660 41.8
CSS0043308 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 1.3e-123 448.0 414 61.4
CDE09G1061 Ceratophyllum demersum HOM05D005422 ORTHO05D006578 3.7e-123 446.4 535 46.5
Mapoly0035s0099 Marchantia polymorpha HOM05D005422 ORTHO05D006578 1.6e-118 431.0 685 39.1
Pp3c10_15960 Physcomitrium patens HOM05D005422 ORTHO05D006578 1.3e-117 427.9 672 38.7
Os12g0242900 Oryza sativa ssp. japonica HOM05D005422 ORTHO05D006578 1.3e-115 421.4 422 52.4
CSS0016009 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 8.2e-115 418.7 420 56.9
HPP92_024298 Vanilla planifolia HOM05D005422 ORTHO05D006578 5.3e-114 416.0 396 55.6
SMO164G0100 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 1.0e-104 385.2 621 37.2
AagrBONN_evm.TU.Sc2ySwM_228.1647 Anthoceros agrestis HOM05D005422 ORTHO05D006578 4.2e-95 353.2 497 41.6
CBR_g26038 Chara braunii HOM05D005422 ORTHO05D006578 5.5e-63 246.5 764 27.5
CSS0044941 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 1.4e-61 241.9 132 87.1
unitig_35.g30205 Utricularia gibba HOM05D005422 ORTHO05D006578 2.9e-56 224.2 237 50.6
MCO02G188 Micromonas commoda HOM05D005422 ORTHO05D006578 2.1e-54 218.0 433 35.1
PRCOL_00001924 Prasinoderma coloniale HOM05D005422 ORTHO05D006578 1.4e-53 215.3 415 34.7
arahy.Tifrunner.gnm1.ann1.T7I6MJ Arachis hypogaea HOM05D005422 ORTHO05D006578 5.0e-48 196.8 240 44.6
Rhsim03G0100700 Rhododendron simsii HOM05D005422 ORTHO05D006578 1.1e-47 195.7 235 50.6
CARHR058070 Cardamine hirsuta HOM05D005422 ORTHO05D006578 1.8e-45 188.3 173 56.6
SMO076G0002 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 3.1e-45 187.6 248 42.7
arahy.Tifrunner.gnm1.ann1.PQ2R0I Arachis hypogaea HOM05D005422 ORTHO05D006578 1.4e-42 178.7 142 62.0
Lsat_1_v5_gn_5_63620 Lactuca sativa HOM05D005422 ORTHO05D006040 3.0e-40 171.0 171 52.0
Cre01.g017450 Chlamydomonas reinhardtii HOM05D005422 ORTHO05D006578 1.2e-38 165.6 389 31.9
Lsat_1_v5_gn_8_120961 Lactuca sativa HOM05D005422 ORTHO05D006578 1.6e-30 138.7 165 46.7
FvH4_4g24360 Fragaria vesca HOM05D005422 ORTHO05D006578 2.1e-30 138.3 100 68.0
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 4.4e-28 130.6 558 25.4
Lsat_1_v5_gn_5_146881 Lactuca sativa HOM05D005422 ORTHO05D019256 1.6e-25 122.1 156 43.6
unitig_35.g30204 Utricularia gibba HOM05D005422 ORTHO05D006578 1.9e-23 115.2 150 43.3
HPP92_024297 Vanilla planifolia HOM05D005422 ORTHO05D006578 3.6e-22 110.9 174 39.1
Potri.008G178951 Populus trichocarpa HOM05D005422 ORTHO05D006578 3.1e-21 107.8 123 49.6
arahy.Tifrunner.gnm1.ann1.IS07F8 Arachis hypogaea HOM05D005422 ORTHO05D006578 9.9e-20 102.8 120 49.2
Lsat_1_v5_gn_2_95100 Lactuca sativa HOM05D005290 ORTHO05D006040 3.8e-19 100.9 176 37.5
arahy.Tifrunner.gnm1.ann1.SR9TX3 Arachis hypogaea HOM05D005422 ORTHO05D001437 3.0e-16 91.3 91 52.7
Lsat_1_v5_gn_7_52961 Lactuca sativa HOM05D001824 ORTHO05D006578 3.0e-16 91.3 66 63.6
Lsat_1_v5_gn_3_78701 Lactuca sativa HOM05D005422 ORTHO05D006578 1.5e-15 89.0 69 62.3
Lsat_1_v5_gn_6_18500 Lactuca sativa HOM05D001824 ORTHO05D006578 1.5e-15 89.0 108 48.1
C02p23310 Brassica napus HOM05D005422 ORTHO05D006578 8.1e-14 83.2 101 43.6
Sabra08G0136500 Salix brachista HOM05D005422 ORTHO05D006578 2.2e-11 75.1 76 44.7
arahy.Tifrunner.gnm1.ann1.L1WA2E Arachis hypogaea HOM05D001562 ORTHO05D001437 1.4e-10 72.4 72 50.0
SHI54583 Sapria himalayana HOM05D005422 ORTHO05D006578 1.2e-09 69.3 53 62.3
VMungo1215G3139 Vigna mungo HOM05D003635 ORTHO05D004283 3.5e-09 67.8 54 57.4
Lsat_1_v5_gn_4_120120 Lactuca sativa HOM05D001824 ORTHO05D006578 7.9e-09 66.6 52 57.7
MBI10_g35396_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 3.9e-08 64.3 49 61.2
arahy.Tifrunner.gnm1.ann1.E05V9C Arachis hypogaea HOM05D000386 ORTHO05D083937 5.6e-07 60.5 60 48.3
Lsat_1_v5_gn_4_129760 Lactuca sativa HOM05D001733 ORTHO05D001882 7.4e-07 60.1 45 66.7
AL1G40980 Arabidopsis lyrata HOM05D002438 ORTHO05D002617 4.8e-06 57.4 41 61.0
BcaC03g14863 Brassica carinata HOM05D000026 ORTHO05D000094 4.8e-06 57.4 51 56.9


User provided reference genes

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