Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0104500 Rhododendron simsii HOM05D005590 ORTHO05D007084 0.0e+00 1819.3 911 100.0
vmacro16128 Vaccinium macrocarpon HOM05D005590 ORTHO05D007084 0.0e+00 1475.3 1043 75.0
CSS0010322 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1465.3 915 81.9
Actinidia33250 Actinidia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1462.6 907 82.0
CSS0021341 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1458.4 915 81.3
Hma1.2p1_1954F.1_g308890 Hydrangea macrophylla HOM05D005590 ORTHO05D007084 0.0e+00 1409.4 914 78.7
Dinv10985 Davidia involucrata HOM05D005590 ORTHO05D007084 0.0e+00 1401.3 904 79.2
TAR629G0528 Trochodendron aralioides HOM05D005590 ORTHO05D007084 0.0e+00 1383.6 915 76.8
GSVIVG01010360001 Vitis vinifera HOM05D005590 ORTHO05D007084 0.0e+00 1383.2 915 76.9
Haze_12376 Corylus avellana HOM05D005590 ORTHO05D007084 0.0e+00 1378.6 917 77.2
Lj6C823G8 Lonicera japonica HOM05D005590 ORTHO05D007084 0.0e+00 1377.5 915 76.7
Cfa009321 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1374.8 942 75.6
QL03p054580 Quercus lobata HOM05D005590 ORTHO05D007084 0.0e+00 1373.2 914 76.9
Cc11_g16690 Coffea canephora HOM05D005590 ORTHO05D007084 0.0e+00 1369.0 915 76.8
Duzib248G1471 Durio zibethinus HOM05D005590 ORTHO05D007084 0.0e+00 1369.0 915 76.2
Cpa.g.sc43.29 Carica papaya HOM05D005590 ORTHO05D007084 0.0e+00 1368.2 915 76.2
CiPaw.05G113900 Carya illinoinensis HOM05D005590 ORTHO05D007084 0.0e+00 1366.3 915 76.0
Thecc.02G275300 Theobroma cacao HOM05D005590 ORTHO05D007084 0.0e+00 1361.7 915 75.5
Eucgr.B03469 Eucalyptus grandis HOM05D005590 ORTHO05D007084 0.0e+00 1355.1 915 75.4
Ciclev10030703m.g Citrus clementina HOM05D005590 ORTHO05D007084 0.0e+00 1350.5 917 75.6
EL10Ac6g13455 Beta vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1350.1 915 74.9
Migut.K00707 Erythranthe guttata HOM05D005590 ORTHO05D007084 0.0e+00 1349.0 915 75.4
Peaxi162Scf00128g00942 Petunia axillaris HOM05D005590 ORTHO05D007084 0.0e+00 1348.6 915 75.3
ECA234G4696 Erigeron canadensis HOM05D005590 ORTHO05D003891 0.0e+00 1347.0 915 74.4
PSO063G4664 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1346.6 915 74.8
SalBow2G1962 Salvia bowleyana HOM05D005590 ORTHO05D007084 0.0e+00 1343.2 915 75.6
AUR62024147 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1342.4 915 74.8
Oeu019045.1 Olea europaea HOM05D005590 ORTHO05D007084 0.0e+00 1342.4 919 75.2
PGR102G0567 Punica granatum HOM05D005590 ORTHO05D007084 0.0e+00 1340.5 918 75.8
MSTRG.7987 Avicennia marina HOM05D005590 ORTHO05D007084 0.0e+00 1339.3 915 75.1
Manes.13G016500 Manihot esculenta HOM05D005590 ORTHO05D007084 0.0e+00 1338.9 915 74.6
CANSAT01G0321 Cannabis sativa HOM05D005590 ORTHO05D007084 0.0e+00 1337.8 915 74.5
TWI36G0819 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1333.9 915 74.9
TWI36G1126 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1333.9 915 74.9
Potri.008G177900 Populus trichocarpa HOM05D005590 ORTHO05D007084 0.0e+00 1331.6 915 74.8
Aqoxy5G03486 Aquilegia oxysepala HOM05D005590 ORTHO05D007084 0.0e+00 1328.9 915 74.4
SGA_v2.0_scaffold9G04769 Striga asiatica HOM05D005590 ORTHO05D007084 0.0e+00 1325.1 915 74.5
Hund25444 Selenicereus undatus HOM05D005590 ORTHO05D007084 0.0e+00 1324.7 915 73.3
Ah.03g133910 Amaranthus hybridus HOM05D005590 ORTHO05D007084 0.0e+00 1323.5 932 73.4
Nn4g22391 Nelumbo nucifera HOM05D005590 ORTHO05D007084 0.0e+00 1317.8 915 73.8
Gohir.D04G181700 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1317.0 915 74.0
Gorai.012G175100 Gossypium raimondii HOM05D005590 ORTHO05D007084 0.0e+00 1315.1 915 73.9
DCAR_031184 Daucus carota HOM05D005590 ORTHO05D007084 0.0e+00 1313.5 987 69.5
TPR.G21797 Trifolium pratense HOM05D005590 ORTHO05D007084 0.0e+00 1312.7 916 73.3
Gohir.A04G138800 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1311.2 915 73.3
Prupe.1G232300 Prunus persica HOM05D005590 ORTHO05D007084 0.0e+00 1310.4 915 73.6
Solyc05g014970.3 Solanum lycopersicum HOM05D005590 ORTHO05D007084 0.0e+00 1308.9 915 72.6
Sopen05g010060 Solanum pennellii HOM05D005590 ORTHO05D007084 0.0e+00 1307.7 915 72.7
Lalb_Chr19g0126761 Lupinus albus HOM05D005590 ORTHO05D007084 0.0e+00 1305.0 916 73.6
Lj6g0026097 Lotus japonicus HOM05D005590 ORTHO05D007084 0.0e+00 1302.7 917 73.3
CsaV3_5G030450 Cucumis sativus L. HOM05D005590 ORTHO05D007084 0.0e+00 1299.6 915 72.3
MELO3C011884.2 Cucumis melo HOM05D005590 ORTHO05D007084 0.0e+00 1297.3 915 72.6
VMungo1383G1779 Vigna mungo HOM05D005590 ORTHO05D007084 0.0e+00 1297.0 916 72.5
Glyma.11G248700 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1291.6 916 72.8
FvH4_4g24160 Fragaria vesca HOM05D005590 ORTHO05D007084 0.0e+00 1290.4 916 72.4
Medtr3g085640 Medicago truncatula HOM05D005590 ORTHO05D007084 0.0e+00 1287.3 916 72.3
Lsat_1_v5_gn_4_2961 Lactuca sativa HOM05D005590 ORTHO05D007084 0.0e+00 1286.2 901 72.6
Phvul.001G260000 Phaseolus vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1285.8 916 72.6
Zm00001eb118150 Zea mays HOM05D005590 ORTHO05D007084 0.0e+00 1280.8 919 70.7
AL2G26220 Arabidopsis lyrata HOM05D005590 ORTHO05D007084 0.0e+00 1278.1 915 71.6
CDE08G0401 Ceratophyllum demersum HOM05D005590 ORTHO05D007084 0.0e+00 1277.3 915 70.6
CARHR060120 Cardamine hirsuta HOM05D005590 ORTHO05D007084 0.0e+00 1275.8 915 71.5
THA.LOC104807889 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 0.0e+00 1275.8 915 70.8
AUR62005583 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1275.0 914 72.1
Glyma.05G146000 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1273.5 917 71.1
Sp5g22560 Schrenkiella parvula HOM05D005590 ORTHO05D007084 0.0e+00 1273.1 915 71.4
Carub.0002s1389 Capsella rubella HOM05D005590 ORTHO05D007084 0.0e+00 1271.5 916 71.3
AT1G67550 Arabidopsis thaliana HOM05D005590 ORTHO05D007084 0.0e+00 1270.8 916 71.4
Sabra08G0135700 Salix brachista HOM05D005590 ORTHO05D007084 0.0e+00 1269.2 924 71.2
BcaC03g14846 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1268.1 916 71.4
RcHm_v2.0_Chr4g0430931 Rosa chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1267.3 915 71.6
A02p14320 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1266.5 922 71.1
FAN07G0306 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1265.8 978 68.1
unitig_22.g6410 Utricularia gibba HOM05D005590 ORTHO05D007084 0.0e+00 1265.8 945 70.4
BcaB05g24294 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1264.6 915 70.9
BolC2t08460H Brassica oleracea HOM05D005590 ORTHO05D007084 0.0e+00 1263.8 922 70.9
BraA02t06492Z Brassica rapa HOM05D005590 ORTHO05D007084 0.0e+00 1261.1 922 70.8
FAN12G4158 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1258.4 985 67.3
Thhalv10018120m.g Eutrema salsugineum HOM05D005590 ORTHO05D007084 0.0e+00 1256.9 915 70.9
Sed0016931 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1252.3 915 70.3
Sc11g0000610 Simmondsia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1249.6 840 75.4
PSO782G2635 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1243.0 808 76.7
ClCG11G013850 Citrullus lanatus HOM05D005590 ORTHO05D007084 0.0e+00 1241.5 891 71.6
HanXRQChr12g0385371 Helianthus annuus HOM05D005590 ORTHO05D007084 0.0e+00 1234.2 840 73.7
Aa31sc48G50 Aethionema arabicum HOM05D005590 ORTHO05D007084 0.0e+00 1223.4 892 70.7
Cfa009347 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1220.7 828 75.5
COL.COLO4_12817 Corchorus olitorius HOM05D005590 ORTHO05D007084 0.0e+00 1214.5 912 69.5
arahy.Tifrunner.gnm1.ann1.F3MU0V Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1202.6 919 69.1
FAN22G2048 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1182.9 847 71.9
arahy.Tifrunner.gnm1.ann1.T6FRZY Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1177.2 919 68.6
C02p23180 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1172.1 843 71.4
SHI17943 Sapria himalayana HOM05D005590 ORTHO05D007084 0.0e+00 1163.7 865 69.2
Ca_16478_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 0.0e+00 1159.4 916 67.5
Pp3c24_5050 Physcomitrium patens HOM05D005590 ORTHO05D007084 0.0e+00 1153.7 916 65.1
SMO117G0108 Selaginella moellendorffii HOM05D005590 ORTHO05D007084 0.0e+00 1142.5 934 62.8
Atru.chr11.2279 Acer truncatum HOM05D005590 ORTHO05D007084 0.0e+00 1133.2 704 80.5
Sed0012865 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1130.9 785 71.5
Nitab4.5_0003209g0020 Nicotiana tabacum HOM05D005590 ORTHO05D007084 0.0e+00 1123.2 912 65.8
AagrBONN_evm.TU.Sc2ySwM_344.1264 Anthoceros agrestis HOM05D005590 ORTHO05D007084 0.0e+00 1117.4 900 64.4
Mapoly0026s0042 Marchantia polymorpha HOM05D005590 ORTHO05D007084 0.0e+00 1111.7 922 62.7
CBR_g46753 Chara braunii HOM05D005590 ORTHO05D007084 0.0e+00 1076.2 929 60.9
ATR0686G208 Amborella trichopoda HOM05D005590 ORTHO05D007084 1.4e-309 1066.2 915 62.1
Psat5g098160 Pisum sativum HOM05D005590 ORTHO05D007084 8.9e-309 1063.5 774 70.0
CAN.G1178.7 Capsicum annuum HOM05D005590 ORTHO05D007084 6.0e-305 1050.8 671 78.2
MCO04G019 Micromonas commoda HOM05D005590 ORTHO05D007084 5.6e-303 1044.3 919 60.5
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 1.3e-299 1033.1 916 59.6
Nitab4.5_0000240g0180 Nicotiana tabacum HOM05D005590 ORTHO05D007084 4.0e-277 958.4 919 59.5
Ca_29988_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 5.9e-244 848.2 702 64.5
HPP92_006206 Vanilla planifolia HOM05D005590 ORTHO05D007084 3.7e-230 802.4 602 67.3
PGSC0003DMG400001246 Solanum tuberosum HOM05D005590 ORTHO05D007084 6.1e-217 758.4 573 67.5
MD13G1114900 Malus domestica HOM05D005590 ORTHO05D007084 2.4e-213 746.5 432 85.6
THA.LOC104808470 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 3.7e-153 546.6 346 80.1
MD13G1114500 Malus domestica HOM05D005590 ORTHO05D007084 6.1e-124 449.5 314 76.1
SEGI_14306 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.8e-112 411.4 303 67.0
THA.LOC104807890 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 1.2e-108 398.7 271 76.0
MD13G1115100 Malus domestica HOM05D005590 ORTHO05D007084 4.4e-98 363.6 345 58.3
Thecc.01G288800 Theobroma cacao HOM05D005590 ORTHO05D007084 7.5e-98 362.8 193 90.2
MD13G1114100 Malus domestica HOM05D005590 ORTHO05D007084 9.5e-93 345.9 403 50.4
FAN17G0818 Fragaria x ananassa HOM05D005590 ORTHO05D007084 5.6e-77 293.5 323 52.0
MD16G1113300 Malus domestica HOM05D005590 ORTHO05D007084 4.3e-69 267.3 292 53.4
CAN.G1862.1 Capsicum annuum HOM05D005590 ORTHO05D007084 2.0e-66 258.5 182 72.0
SEGI_06493 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.2e-50 206.1 156 69.2
SEGI_40048 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 3.6e-44 184.5 140 67.1
SGA_v2.0_scaffold218G42496 Striga asiatica HOM05D005590 ORTHO05D007084 2.1e-39 168.7 158 58.2
Zm00001eb372290 Zea mays HOM05D005590 ORTHO05D007084 8.1e-36 156.8 94 79.8
Glyma.08G102966 Glycine max HOM05D005590 ORTHO05D007084 5.8e-34 150.6 83 83.1
Thecc.01G288900 Theobroma cacao HOM05D005590 ORTHO05D007084 2.7e-31 141.7 169 49.7
HanXRQChr10g0279721 Helianthus annuus HOM05D005590 ORTHO05D007084 3.7e-28 131.3 85 72.9
Cfa009349 Carpinus fangiana HOM05D005590 ORTHO05D043575 9.0e-27 126.7 75 86.7
MBI11_g15881_MAGBIO Magnolia biondii HOM05D005590 ORTHO05D007084 9.3e-24 116.7 122 56.6
TAR629G1224 Trochodendron aralioides HOM05D005590 ORTHO05D043575 6.7e-22 110.5 81 71.6
Glyma.08G103032 Glycine max HOM05D005590 ORTHO05D007084 1.3e-20 106.3 66 80.3
SEGI_08905 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 3.7e-20 104.8 116 50.9
Zm00001eb019970 Zea mays HOM05D005590 ORTHO05D007084 1.1e-19 103.2 63 77.8
SHI17942 Sapria himalayana HOM05D000084 ORTHO05D002602 2.8e-12 78.6 52 69.2
SEGI_03265 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 2.6e-10 72.0 73 61.6
Atru.chr11.2280 Acer truncatum HOM05D005590 ORTHO05D007084 5.5e-08 64.3 145 37.2
Lsat_1_v5_gn_2_31840 Lactuca sativa HOM05D005173 ORTHO05D006214 7.9e-07 60.5 54 48.1


User provided reference genes

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