Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0104200 Rhododendron simsii HOM05D015834 ORTHO05D000140 7.2e-242 840.1 408 100.0
Rhsim07G0109100 Rhododendron simsii HOM05D021294 ORTHO05D000921 1.8e-88 330.5 252 69.4
vmacro16933 Vaccinium macrocarpon HOM05D003171 ORTHO05D000037 1.6e-39 167.9 414 32.1
Rhsim12G0104000 Rhododendron simsii HOM05D015834 ORTHO05D000140 6.0e-39 166.0 217 46.1
Rhsim02G0174500 Rhododendron simsii HOM05D021294 ORTHO05D000921 4.6e-31 139.8 237 36.3
Rhsim09G0057100 Rhododendron simsii HOM05D021294 ORTHO05D000921 7.4e-29 132.5 264 34.5
Rhsim04G0120400 Rhododendron simsii HOM05D004575 ORTHO05D005774 3.1e-27 127.1 103 60.2
Rhsim05G0091300 Rhododendron simsii HOM05D015834 ORTHO05D000140 4.0e-27 126.7 103 58.3
Rhsim05G0129800 Rhododendron simsii HOM05D015834 ORTHO05D000140 2.0e-26 124.4 111 57.7
Rhsim03G0116000 Rhododendron simsii HOM05D021294 ORTHO05D000921 2.5e-24 117.5 212 40.6
Rhsim04G0136100 Rhododendron simsii HOM05D015834 ORTHO05D000140 1.2e-23 115.2 86 59.3
vmacro03366 Vaccinium macrocarpon HOM05D000034 ORTHO05D000037 1.0e-22 112.1 95 56.8
Rhsim13G0129300 Rhododendron simsii HOM05D000665 ORTHO05D000921 3.9e-22 110.2 188 37.2
Rhsim10G0105100 Rhododendron simsii HOM05D015834 ORTHO05D000140 6.7e-22 109.4 89 56.2
vmacro23511 Vaccinium macrocarpon HOM05D000034 ORTHO05D000037 1.9e-21 107.8 95 55.8
Rhsim02G0173900 Rhododendron simsii HOM05D020286 ORTHO05D013153 4.5e-18 96.7 188 31.9
Rhsim02G0174000 Rhododendron simsii HOM05D021294 ORTHO05D000921 2.9e-17 94.0 178 33.7
Rhsim09G0057200 Rhododendron simsii HOM05D000034 ORTHO05D000037 7.1e-16 89.4 91 52.7
Rhsim11G0027200 Rhododendron simsii HOM05D015834 ORTHO05D000140 6.1e-15 86.3 84 56.0
vmacro20721 Vaccinium macrocarpon HOM05D000348 ORTHO05D000244 3.0e-14 84.0 96 45.8
Rhsim05G0162300 Rhododendron simsii HOM05D000034 ORTHO05D000140 5.7e-13 79.7 70 57.1
MBI15_g10630_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 6.3e-12 76.3 47 66.0
Rhsim02G0197600 Rhododendron simsii HOM05D015834 ORTHO05D000140 5.3e-11 73.2 71 52.1
Rhsim05G0162200 Rhododendron simsii HOM05D000017 ORTHO05D000013 5.3e-11 73.2 71 52.1
Dinv18713 Davidia involucrata HOM05D016106 ORTHO05D000140 9.0e-11 72.4 194 27.3
MBI11_g03117_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 9.0e-11 72.4 53 56.6
MBI18_g28053_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 9.0e-11 72.4 53 56.6
Hma1.2p1_0354F.1_g133450 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 2.0e-10 71.2 111 35.1
MBI10_g22311_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 2.6e-10 70.9 53 54.7
MBI13_g15307_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 2.6e-10 70.9 82 35.4
MBI09_g18488_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 3.4e-10 70.5 52 57.7
MBI19_g15844_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 4.5e-10 70.1 55 50.9
MBI14_g23540_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 5.9e-10 69.7 53 58.5
MBI16_g16474_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 5.9e-10 69.7 84 34.5
CSS0048883 Camellia sinensis var. sinensis HOM05D003171 ORTHO05D000921 1.0e-09 68.9 255 25.1
Hma1.2p1_0127F.1_g059736 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 1.3e-09 68.6 114 33.3
Hma1.2p1_0276F.1_g111440 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 1.3e-09 68.6 114 33.3
Hma1.2p1_0286F.1_g113985 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 1.3e-09 68.6 114 33.3
MBI06_g21011_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 2.9e-09 67.4 52 53.8
MBI10_g14777_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 2.9e-09 67.4 53 52.8
MBI14_g03551_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 2.9e-09 67.4 309 24.6
MBI08_g17873_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 3.8e-09 67.0 55 50.9
MBI18_g15796_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 3.8e-09 67.0 46 60.9
Dinv01449 Davidia involucrata HOM05D016106 ORTHO05D000140 5.0e-09 66.6 54 55.6
MBI05_g19985_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 5.0e-09 66.6 84 33.3
Atru.chr2.1871 Acer truncatum HOM05D001008 ORTHO05D003293 6.5e-09 66.2 71 45.1
Actinidia32163 Actinidia chinensis HOM05D000250 ORTHO05D000625 6.5e-09 66.2 42 66.7
MBI17_g24559_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 6.5e-09 66.2 83 33.7
MBI18_g40400_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 6.5e-09 66.2 46 58.7
vmacro22371 Vaccinium macrocarpon HOM05D000034 ORTHO05D000140 6.5e-09 66.2 86 36.0
vmacro22899 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 6.5e-09 66.2 86 36.0
Dinv30225 Davidia involucrata HOM05D016106 ORTHO05D000140 1.1e-08 65.5 54 55.6
MBI06_g45460_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 1.1e-08 65.5 52 53.8
MBI14_g09678_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 1.1e-08 65.5 61 49.2
vmacro02413 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 1.1e-08 65.5 63 42.9
MBI05_g32458_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 1.4e-08 65.1 46 54.3
MBI16_g20810_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 1.4e-08 65.1 55 50.9
MBI04_g40838_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 1.9e-08 64.7 64 45.3
QL06p033820 Quercus lobata HOM05D003171 ORTHO05D000921 2.5e-08 64.3 118 33.9
vmacro22551 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 2.5e-08 64.3 50 46.0
MBI01_g15674_MAGBIO Magnolia biondii HOM05D000841 ORTHO05D001553 3.2e-08 63.9 89 37.1
vmacro01860 Vaccinium macrocarpon HOM05D004488 ORTHO05D005374 3.2e-08 63.9 76 35.5
CANSAT80G1832 Cannabis sativa HOM05D000034 ORTHO05D000921 4.2e-08 63.5 323 24.1
MBI09_g46271_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 4.2e-08 63.5 299 24.4
vmacro11121 Vaccinium macrocarpon HOM05D000552 ORTHO05D000469 4.2e-08 63.5 60 40.0
MBI04_g06284_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 5.5e-08 63.2 56 50.0
MBI07_g45036_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 5.5e-08 63.2 49 51.0
MBI17_g32475_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 5.5e-08 63.2 61 47.5
vmacro16960 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 5.5e-08 63.2 50 46.0
MBI16_g45901_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 9.4e-08 62.4 62 48.4
QL09p025174 Quercus lobata HOM05D003171 ORTHO05D000921 9.4e-08 62.4 118 32.2
MBI11_g44583_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 1.2e-07 62.0 61 47.5
MBI16_g41814_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 1.2e-07 62.0 335 20.9
Atru.chr6.630 Acer truncatum HOM05D003171 ORTHO05D000921 1.6e-07 61.6 94 38.3
MBI07_g22176_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 1.6e-07 61.6 49 49.0
QL02p070399 Quercus lobata HOM05D003171 ORTHO05D000921 1.6e-07 61.6 118 32.2
QL05p040133 Quercus lobata HOM05D003171 ORTHO05D000921 1.6e-07 61.6 118 32.2
QL09p032434 Quercus lobata HOM05D003171 ORTHO05D000921 1.6e-07 61.6 118 32.2
QL10p053818 Quercus lobata HOM05D003171 ORTHO05D000921 1.6e-07 61.6 118 32.2
FvH4_7g00340 Fragaria vesca HOM05D003171 ORTHO05D000921 2.1e-07 61.2 71 40.8
MBI12_g35071_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 2.1e-07 61.2 64 42.2
MBI18_g09619_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 2.1e-07 61.2 61 45.9
Atru.chr5.3274 Acer truncatum HOM05D003171 ORTHO05D000921 2.7e-07 60.8 71 42.3
Eucgr.B02958 Eucalyptus grandis HOM05D000665 ORTHO05D000285 2.7e-07 60.8 98 32.7
MBI06_g00795_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 2.7e-07 60.8 55 47.3
MBI06_g38357_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 2.7e-07 60.8 53 49.1
Ciclev10026935m.g Citrus clementina HOM05D022373 ORTHO05D013915 3.6e-07 60.5 66 43.9
MBI14_g36868_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 3.6e-07 60.5 84 39.3
MBI16_g30404_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 3.6e-07 60.5 57 49.1
MBI19_g00241_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000037 3.6e-07 60.5 55 49.1
QL05p071275 Quercus lobata HOM05D001821 ORTHO05D013915 3.6e-07 60.5 94 38.3
Lj6g0017717 Lotus japonicus HOM05D007728 ORTHO05D009681 4.6e-07 60.1 51 51.0
MBI04_g13684_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 4.6e-07 60.1 45 55.6
MBI18_g11463_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 4.6e-07 60.1 49 49.0
SalBow8G0773 Salvia bowleyana HOM05D022373 ORTHO05D013873 4.6e-07 60.1 93 34.4
Lj1g0027806 Lotus japonicus HOM05D007728 ORTHO05D009681 6.1e-07 59.7 60 45.0
MBI11_g22236_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 6.1e-07 59.7 82 35.4
QL05p062248 Quercus lobata HOM05D003171 ORTHO05D000921 6.1e-07 59.7 118 31.4
RcHm_v2.0_Chr1g0354771 Rosa chinensis HOM05D003171 ORTHO05D000921 6.1e-07 59.7 71 39.4
MBI11_g46337_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 7.9e-07 59.3 61 45.9
Prupe.7G061200 Prunus persica HOM05D003171 ORTHO05D000921 7.9e-07 59.3 96 33.3
Rhsim08G0141100 Rhododendron simsii HOM05D000006 ORTHO05D000001 7.9e-07 59.3 95 35.8
SalBow7G1281 Salvia bowleyana HOM05D011659 ORTHO05D013873 7.9e-07 59.3 59 44.1
vmacro13236 Vaccinium macrocarpon HOM05D000034 ORTHO05D000037 7.9e-07 59.3 58 43.1
Atru.chr1.2029 Acer truncatum HOM05D000144 ORTHO05D013356 1.0e-06 58.9 105 34.3
CANSAT25G2398 Cannabis sativa HOM05D000665 ORTHO05D000921 1.0e-06 58.9 145 32.4
Hma1.2p1_0633F.1_g192570 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 1.0e-06 58.9 68 44.1
MBI01_g33385_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 1.0e-06 58.9 84 32.1
Lj6g0015415 Lotus japonicus HOM05D010765 ORTHO05D019219 1.4e-06 58.5 59 44.1
Ciclev10006218m.g Citrus clementina HOM05D022373 ORTHO05D013915 1.8e-06 58.2 63 44.4
Eucgr.F03745 Eucalyptus grandis HOM05D000665 ORTHO05D000285 1.8e-06 58.2 91 31.9
Lj4g0000181 Lotus japonicus HOM05D007728 ORTHO05D009681 1.8e-06 58.2 52 46.2
Lj4g0001150 Lotus japonicus HOM05D007728 ORTHO05D009681 1.8e-06 58.2 52 46.2
Lj4g0023843 Lotus japonicus HOM05D007728 ORTHO05D009681 1.8e-06 58.2 52 46.2
MBI03_g05519_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 1.8e-06 58.2 44 54.5
MBI07_g27359_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 1.8e-06 58.2 62 45.2
MBI17_g45263_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 1.8e-06 58.2 56 42.9
Rhsim02G0181300 Rhododendron simsii HOM05D003171 ORTHO05D000921 1.8e-06 58.2 152 28.9
arahy.Tifrunner.gnm1.ann1.PVH5D1 Arachis hypogaea HOM05D014394 ORTHO05D019767 2.3e-06 57.8 46 47.8
CANSAT01G1895 Cannabis sativa HOM05D003171 ORTHO05D000921 2.3e-06 57.8 127 33.9
MBI06_g04305_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 2.3e-06 57.8 77 33.8
MBI16_g39223_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 2.3e-06 57.8 83 37.3
MBI17_g01497_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 2.3e-06 57.8 59 40.7
MBI17_g12070_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 2.3e-06 57.8 49 44.9
arahy.Tifrunner.gnm1.ann1.K1CL84 Arachis hypogaea HOM05D014394 ORTHO05D019767 3.0e-06 57.4 46 47.8
CANSAT01G1528 Cannabis sativa HOM05D000665 ORTHO05D000921 3.0e-06 57.4 71 38.0
CANSAT21G0783 Cannabis sativa HOM05D000034 ORTHO05D000037 3.0e-06 57.4 119 35.3
CANSAT25G1613 Cannabis sativa HOM05D000034 ORTHO05D000037 3.0e-06 57.4 137 32.8
Ciclev10033861m.g Citrus clementina HOM05D022373 ORTHO05D013915 3.0e-06 57.4 69 42.0
CSS0041232 Camellia sinensis var. sinensis HOM05D003171 ORTHO05D000921 3.9e-06 57.0 152 29.6
CANSAT01G0669 Cannabis sativa HOM05D000665 ORTHO05D000921 3.9e-06 57.0 89 33.7
MBI09_g25169_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 3.9e-06 57.0 42 54.8
MBI18_g01503_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000037 3.9e-06 57.0 52 48.1
Atru.chr4.522 Acer truncatum HOM05D000144 ORTHO05D013915 5.1e-06 56.6 102 30.4
MBI13_g15313_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 5.1e-06 56.6 92 30.4
MBI16_g10438_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 5.1e-06 56.6 44 54.5
arahy.Tifrunner.gnm1.ann1.TH5YFU Arachis hypogaea HOM05D014394 ORTHO05D019767 8.8e-06 55.8 46 45.7
CANSAT01G0970 Cannabis sativa HOM05D000034 ORTHO05D000037 8.8e-06 55.8 89 38.2
CANSAT54G0349 Cannabis sativa HOM05D000034 ORTHO05D000037 8.8e-06 55.8 89 38.2
MBI02_g41149_MAGBIO Magnolia biondii HOM05D022373 ORTHO05D000140 8.8e-06 55.8 53 43.4
MBI03_g22539_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 8.8e-06 55.8 46 47.8
MBI16_g31804_MAGBIO Magnolia biondii HOM05D016460 ORTHO05D000140 8.8e-06 55.8 50 46.0
MBI18_g46212_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 8.8e-06 55.8 91 31.9


User provided reference genes

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