Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0103900 Rhododendron simsii HOM05D003867 ORTHO05D004593 3.7e-282 974.2 473 100.0
vmacro15114 Vaccinium macrocarpon HOM05D003867 ORTHO05D004593 7.9e-277 956.4 471 97.9
Rhsim12G0153900 Rhododendron simsii HOM05D003867 ORTHO05D004593 8.8e-276 953.0 475 97.7
Gohir.A12G147700 Gossypium hirsutum HOM05D003867 ORTHO05D004593 2.6e-267 924.9 474 93.5
CSS0008021 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 4.4e-267 924.1 471 94.3
CSS0021164 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 4.4e-267 924.1 474 94.7
Gorai.008G164400 Gossypium raimondii HOM05D003867 ORTHO05D004593 9.7e-267 922.9 474 94.5
Gohir.D12G152000 Gossypium hirsutum HOM05D003867 ORTHO05D004593 2.8e-266 921.4 474 94.1
Duzib248G0225 Durio zibethinus HOM05D003867 ORTHO05D004593 6.3e-266 920.2 473 94.3
Gorai.001G109800 Gossypium raimondii HOM05D003867 ORTHO05D004593 1.1e-265 919.5 474 94.1
Duzib268G1394 Durio zibethinus HOM05D003867 ORTHO05D004593 1.4e-265 919.1 473 94.3
Gohir.A07G097600 Gossypium hirsutum HOM05D003867 ORTHO05D004593 1.4e-265 919.1 473 93.4
TWI75G1178 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 7.0e-265 916.8 471 93.6
TWI36G0688 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 1.2e-264 916.0 474 93.9
Gohir.D07G101900 Gossypium hirsutum HOM05D003867 ORTHO05D004593 2.7e-264 914.8 474 93.7
Thecc.02G275800 Theobroma cacao HOM05D003867 ORTHO05D004593 2.7e-264 914.8 474 93.5
COL.COLO4_12823 Corchorus olitorius HOM05D003867 ORTHO05D004593 4.5e-264 914.1 474 93.5
CANSAT64G1093 Cannabis sativa HOM05D003867 ORTHO05D004593 1.3e-263 912.5 474 93.2
CiPaw.05G113400 Carya illinoinensis HOM05D003867 ORTHO05D004593 1.3e-263 912.5 474 93.9
Manes.12G014300 Manihot esculenta HOM05D003867 ORTHO05D004593 1.7e-263 912.1 472 94.1
Duzib251G0884 Durio zibethinus HOM05D003867 ORTHO05D004593 3.8e-263 911.0 474 93.0
Haze_12379 Corylus avellana HOM05D003867 ORTHO05D004593 6.5e-263 910.2 474 93.2
Nn4g22382 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.5e-262 909.1 474 93.0
ClCG02G006860 Citrullus lanatus HOM05D003867 ORTHO05D004593 1.6e-261 905.6 459 94.6
MELO3C009702.2 Cucumis melo HOM05D003867 ORTHO05D004593 1.6e-261 905.6 473 92.4
QL03p054504 Quercus lobata HOM05D003867 ORTHO05D004593 2.7e-261 904.8 470 93.2
Hund25446 Selenicereus undatus HOM05D003867 ORTHO05D004593 2.7e-261 904.8 470 92.8
Lalb_Chr03g0037281 Lupinus albus HOM05D003867 ORTHO05D004593 3.6e-261 904.4 474 92.4
CsaV3_3G039600 Cucumis sativus L. HOM05D003867 ORTHO05D004593 1.0e-260 902.9 467 93.1
PGR119G1061 Punica granatum HOM05D003867 ORTHO05D004593 1.0e-260 902.9 479 91.6
Ca_12000_v3 Cicer arietinum L. HOM05D003867 ORTHO05D004593 1.4e-260 902.5 473 92.2
Nitab4.5_0000271g0190 Nicotiana tabacum HOM05D003867 ORTHO05D004593 2.3e-260 901.7 473 91.3
Potri.010G057400 Populus trichocarpa HOM05D003867 ORTHO05D004593 2.3e-260 901.7 470 93.4
ECA232G3717 Erigeron canadensis HOM05D003867 ORTHO05D004593 3.0e-260 901.4 474 90.9
VMungo0720G1468 Vigna mungo HOM05D003867 ORTHO05D004593 3.0e-260 901.4 483 90.7
arahy.Tifrunner.gnm1.ann1.VZW0IR Arachis hypogaea HOM05D003867 ORTHO05D004593 4.0e-260 901.0 473 92.4
Lalb_Chr01g0021001 Lupinus albus HOM05D003867 ORTHO05D004593 4.0e-260 901.0 473 91.8
Peaxi162Scf00128g01017 Petunia axillaris HOM05D003867 ORTHO05D004593 4.0e-260 901.0 473 91.5
Cpa.g.sc257.6 Carica papaya HOM05D003867 ORTHO05D004593 5.2e-260 900.6 468 92.9
TAR374G1237 Trochodendron aralioides HOM05D003867 ORTHO05D004593 1.2e-259 899.4 473 92.2
MD13G1115400 Malus domestica HOM05D003867 ORTHO05D004593 2.0e-259 898.7 474 91.6
Prupe.1G231900 Prunus persica HOM05D003867 ORTHO05D004593 2.0e-259 898.7 474 91.6
Medtr1g042300 Medicago truncatula HOM05D003867 ORTHO05D004593 2.6e-259 898.3 473 91.5
Glyma.02G003300 Glycine max HOM05D003867 ORTHO05D004593 4.4e-259 897.5 474 91.4
Glyma.10G005500 Glycine max HOM05D003867 ORTHO05D004593 4.4e-259 897.5 474 91.1
PGSC0003DMG400001292 Solanum tuberosum HOM05D003867 ORTHO05D004593 4.4e-259 897.5 473 91.3
TPR.G25178 Trifolium pratense HOM05D003867 ORTHO05D004593 4.4e-259 897.5 474 91.1
Migut.E00031 Erythranthe guttata HOM05D003867 ORTHO05D004593 5.7e-259 897.1 473 91.3
Hund06074 Selenicereus undatus HOM05D003867 ORTHO05D004593 5.7e-259 897.1 471 92.4
MBI11_g06772_MAGBIO Magnolia biondii HOM05D003867 ORTHO05D004593 7.5e-259 896.7 473 91.5
ATR0665G595 Amborella trichopoda HOM05D003867 ORTHO05D004593 1.3e-258 896.0 473 91.1
CDE09G0709 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 1.3e-258 896.0 472 90.9
Nn3g16522 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.3e-258 896.0 473 91.5
HanXRQChr09g0255191 Helianthus annuus HOM05D003867 ORTHO05D004593 1.7e-258 895.6 467 91.6
Solyc02g087240.4 Solanum lycopersicum HOM05D003867 ORTHO05D004593 2.8e-258 894.8 473 90.9
Sopen02g031980 Solanum pennellii HOM05D003867 ORTHO05D004593 2.8e-258 894.8 473 90.9
DCAR_007011 Daucus carota HOM05D003867 ORTHO05D004593 3.7e-258 894.4 474 90.7
Phvul.007G274700 Phaseolus vulgaris HOM05D003867 ORTHO05D004593 3.7e-258 894.4 474 91.6
Psat6g040120 Pisum sativum HOM05D003867 ORTHO05D004593 6.3e-258 893.6 473 91.1
MD16G1115300 Malus domestica HOM05D003867 ORTHO05D004593 1.4e-257 892.5 473 91.3
Eucgr.H04659 Eucalyptus grandis HOM05D003867 ORTHO05D004593 1.8e-257 892.1 463 93.3
THA.LOC104819362 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 1.8e-257 892.1 478 90.4
Sabra10G0047900 Salix brachista HOM05D003867 ORTHO05D004593 9.1e-257 889.8 474 91.4
Ah.03g133960 Amaranthus hybridus HOM05D003867 ORTHO05D004593 1.2e-256 889.4 473 90.7
Sed0026140 Sechium edule HOM05D003867 ORTHO05D004593 1.2e-256 889.4 474 90.9
ATR0564G372 Amborella trichopoda HOM05D003867 ORTHO05D004593 1.6e-256 889.0 473 90.5
A03p03890 Brassica napus HOM05D003867 ORTHO05D004593 1.6e-256 889.0 469 91.5
CAN.G206.61 Capsicum annuum HOM05D003867 ORTHO05D004593 1.6e-256 889.0 472 90.5
Oeu020305.1 Olea europaea HOM05D003867 ORTHO05D004593 1.6e-256 889.0 473 90.9
Ciclev10033600m.g Citrus clementina HOM05D003867 ORTHO05D004593 2.7e-256 888.3 453 94.3
Peaxi162Scf00449g00825 Petunia axillaris HOM05D003867 ORTHO05D004593 2.7e-256 888.3 468 91.0
MSTRG.7988 Avicennia marina HOM05D003867 ORTHO05D004593 3.5e-256 887.9 472 91.1
EL10Ac6g13463 Beta vulgaris HOM05D003867 ORTHO05D004593 4.5e-256 887.5 470 91.1
Lj6g0022289 Lotus japonicus HOM05D003867 ORTHO05D004593 4.5e-256 887.5 462 93.1
RcHm_v2.0_Chr4g0430891 Rosa chinensis HOM05D003867 ORTHO05D004593 5.9e-256 887.1 473 90.5
DCAR_031187 Daucus carota HOM05D003867 ORTHO05D004593 7.7e-256 886.7 473 90.1
FvH4_4g24110 Fragaria vesca HOM05D003867 ORTHO05D004593 1.0e-255 886.3 473 90.3
PSO063G4816 Papaver somniferum HOM05D003867 ORTHO05D004593 2.2e-255 885.2 473 90.1
Aqoxy3G01483 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 5.0e-255 884.0 474 90.5
CARHR204460 Cardamine hirsuta HOM05D003867 ORTHO05D004593 5.0e-255 884.0 468 90.8
Thhalv10013394m.g Eutrema salsugineum HOM05D003867 ORTHO05D004593 5.0e-255 884.0 468 91.0
Lsat_1_v5_gn_4_184020 Lactuca sativa HOM05D003867 ORTHO05D004593 5.0e-255 884.0 461 91.8
PSO782G1516 Papaver somniferum HOM05D003867 ORTHO05D004593 8.5e-255 883.2 436 95.0
Aa31LG3G18010 Aethionema arabicum HOM05D003867 ORTHO05D004593 1.5e-254 882.5 472 90.0
BcaB08g37249 Brassica carinata HOM05D003867 ORTHO05D004593 1.5e-254 882.5 472 90.3
A10p28200 Brassica napus HOM05D003867 ORTHO05D004593 1.5e-254 882.5 472 90.3
BolC9t59588H Brassica oleracea HOM05D003867 ORTHO05D004593 1.5e-254 882.5 472 90.3
BraA10t44869Z Brassica rapa HOM05D003867 ORTHO05D004593 1.5e-254 882.5 472 90.3
Carub.0006s0748 Capsella rubella HOM05D003867 ORTHO05D004593 1.5e-254 882.5 472 90.0
C09p68410 Brassica napus HOM05D003867 ORTHO05D004593 2.5e-254 881.7 474 89.9
Zm00001eb329270 Zea mays HOM05D003867 ORTHO05D004593 2.5e-254 881.7 463 92.2
AT5G08530 Arabidopsis thaliana HOM05D003867 ORTHO05D004593 3.2e-254 881.3 468 90.6
HanXRQChr15g0486841 Helianthus annuus HOM05D003867 ORTHO05D004593 3.2e-254 881.3 467 90.6
Zm00001eb110430 Zea mays HOM05D003867 ORTHO05D004593 3.2e-254 881.3 463 92.2
AL6G19230 Arabidopsis lyrata HOM05D003867 ORTHO05D004593 7.2e-254 880.2 463 91.4
C03p04400 Brassica napus HOM05D003867 ORTHO05D004593 7.2e-254 880.2 478 89.1
BolC3t12971H Brassica oleracea HOM05D003867 ORTHO05D004593 7.2e-254 880.2 478 88.9
Oeu019042.1 Olea europaea HOM05D003867 ORTHO05D004593 9.5e-254 879.8 473 90.5
Os07g0645400 Oryza sativa ssp. japonica HOM05D003867 ORTHO05D004593 1.6e-253 879.0 458 93.2
Sp6g34370 Schrenkiella parvula HOM05D003867 ORTHO05D004593 1.6e-253 879.0 468 90.4
Sc04g0010000 Simmondsia chinensis HOM05D003867 ORTHO05D004593 1.6e-253 879.0 456 91.9
BcaB01g05588 Brassica carinata HOM05D003867 ORTHO05D004593 2.1e-253 878.6 478 88.9
BraA03t09737Z Brassica rapa HOM05D003867 ORTHO05D004593 3.6e-253 877.9 437 94.3
THA.LOC104818400 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 4.7e-253 877.5 464 91.4
SGA_v2.0_scaffold63G21760 Striga asiatica HOM05D003867 ORTHO05D004593 2.0e-251 872.1 473 88.6
SGA_v2.0_scaffold347G49568 Striga asiatica HOM05D003867 ORTHO05D004593 4.4e-251 870.9 473 88.4
Cc11_g16710 Coffea canephora HOM05D003867 ORTHO05D004593 1.3e-250 869.4 441 94.1
SMO141G0212 Selaginella moellendorffii HOM05D003867 ORTHO05D004593 2.0e-248 862.1 457 89.5
SEGI_02035 Sequoiadendron giganteum HOM05D003867 ORTHO05D004593 5.0e-247 857.4 473 87.7
Pp3c12_4050 Physcomitrium patens HOM05D003867 ORTHO05D004593 1.2e-245 852.8 470 87.9
Pp3c4_17990 Physcomitrium patens HOM05D003867 ORTHO05D004593 1.8e-244 849.0 461 88.9
AagrBONN_evm.TU.Sc2ySwM_117.2067 Anthoceros agrestis HOM05D003867 ORTHO05D004593 2.6e-243 845.1 484 84.3
Mapoly0052s0094 Marchantia polymorpha HOM05D003867 ORTHO05D004593 1.7e-242 842.4 439 90.9
CBR_g4558 Chara braunii HOM05D003867 ORTHO05D004593 1.1e-241 839.7 434 90.1
HanXRQChr15g0475281 Helianthus annuus HOM05D003867 ORTHO05D004593 3.2e-241 838.2 443 88.0
CiPaw.06G100100 Carya illinoinensis HOM05D003867 ORTHO05D004593 9.5e-238 826.6 408 96.1
arahy.Tifrunner.gnm1.ann1.IM3BGM Arachis hypogaea HOM05D003867 ORTHO05D004593 1.4e-236 822.8 407 95.6
Lsat_1_v5_gn_0_47760 Lactuca sativa HOM05D003867 ORTHO05D004593 3.4e-235 818.1 453 84.3
unitig_21.g20878 Utricularia gibba HOM05D003867 ORTHO05D004593 9.8e-235 816.6 407 93.9
AUR62024144 Chenopodium quinoa HOM05D003867 ORTHO05D004593 2.2e-234 815.5 406 94.8
AUR62005586 Chenopodium quinoa HOM05D003867 ORTHO05D004593 8.3e-234 813.5 405 94.8
MCO16G634 Micromonas commoda HOM05D003867 ORTHO05D004593 3.7e-226 788.1 433 84.5
CDE02G4050 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 6.0e-224 780.8 472 81.6
Dinv37748 Davidia involucrata HOM05D003867 ORTHO05D004593 6.0e-224 780.8 384 96.9
CBR_g30767 Chara braunii HOM05D003867 ORTHO05D004593 1.2e-219 766.5 421 82.7
Dinv39063 Davidia involucrata HOM05D003867 ORTHO05D004593 1.5e-219 766.1 387 94.1
PRCOL_00003927 Prasinoderma coloniale HOM05D003867 ORTHO05D004593 9.9e-219 763.5 427 81.3
Cre10.g422600 Chlamydomonas reinhardtii HOM05D003867 ORTHO05D004593 2.2e-218 762.3 455 79.1
Actinidia08082 Actinidia chinensis HOM05D003867 ORTHO05D004593 8.9e-212 740.3 376 94.4
Sed0024813 Sechium edule HOM05D003867 ORTHO05D004593 1.5e-206 723.0 474 77.0
Nn7g37842 Nelumbo nucifera HOM05D003867 ORTHO05D004593 3.3e-190 668.7 346 91.9
SGA_v2.0_scaffold1484G53963 Striga asiatica HOM05D003867 ORTHO05D004593 2.1e-184 649.4 356 87.4
Haze_26697 Corylus avellana HOM05D003867 ORTHO05D004593 2.3e-183 646.0 395 73.7
HPP92_000985 Vanilla planifolia HOM05D003867 ORTHO05D004593 1.2e-176 623.6 315 94.0
FAN17G1814 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.7e-173 613.2 464 69.2
unitig_744.g24299 Utricularia gibba HOM05D003867 ORTHO05D004593 5.7e-166 588.2 321 88.8
FAN12G0392 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.8e-164 583.2 473 66.0
FAN22G0799 Fragaria x ananassa HOM05D003867 ORTHO05D004593 2.6e-163 579.3 472 65.5
FAN07G1251 Fragaria x ananassa HOM05D003867 ORTHO05D004593 5.0e-162 575.1 472 65.5
Nn3g20865 Nelumbo nucifera HOM05D003867 ORTHO05D004593 4.1e-148 528.9 279 89.6
Actinidia20690 Actinidia chinensis HOM05D003867 ORTHO05D004593 1.4e-140 503.8 351 72.6
Haze_26928 Corylus avellana HOM05D003867 ORTHO05D004593 1.1e-124 451.1 276 74.3
TAR629G2520 Trochodendron aralioides HOM05D003867 ORTHO05D004593 1.6e-115 420.6 203 98.0
Aqoxy3G01811 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 3.3e-97 359.8 175 93.7
Actinidia09668 Actinidia chinensis HOM05D003867 ORTHO05D004593 9.6e-97 358.2 191 89.0
TAR629G2231 Trochodendron aralioides HOM05D003867 ORTHO05D004593 2.2e-93 347.1 172 96.5
CSS0023173 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 4.6e-91 339.3 171 95.3
Nitab4.5_0000581g0020 Nicotiana tabacum HOM05D003867 ORTHO05D004593 1.0e-82 311.6 473 42.7
Atru.chr11.2286 Acer truncatum HOM05D003867 ORTHO05D004593 7.9e-75 285.4 146 91.8
Lj6P823T18 Lonicera japonica HOM05D003867 ORTHO05D004593 3.5e-67 260.0 146 84.9
HPP92_000984 Vanilla planifolia HOM05D003867 ORTHO05D004593 1.5e-65 254.6 136 91.9
MD16G1114900 Malus domestica HOM05D003867 ORTHO05D004593 6.3e-64 249.2 127 89.0
unitig_744.g24298 Utricularia gibba HOM05D003867 ORTHO05D004593 8.2e-64 248.8 127 93.7
GSVIVG01020401001 Vitis vinifera HOM05D003867 ORTHO05D004593 1.1e-57 228.4 135 84.4
Aqoxy84s003 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 6.9e-55 219.2 254 44.5
MD16G1114800 Malus domestica HOM05D003867 ORTHO05D004593 1.4e-52 211.5 100 97.0
Nn8g40622 Nelumbo nucifera HOM05D003867 ORTHO05D004593 2.3e-50 204.1 102 93.1
Actinidia09669 Actinidia chinensis HOM05D003867 ORTHO05D004593 3.0e-50 203.8 114 88.6
Potri.008G177801 Populus trichocarpa HOM05D003867 ORTHO05D004593 2.1e-35 154.5 92 79.3
C02p03650 Brassica napus HOM05D003867 ORTHO05D004593 8.0e-35 152.5 77 96.1
BolC2t06324H Brassica oleracea HOM05D003867 ORTHO05D004593 8.0e-35 152.5 77 96.1
BcaC03g13233 Brassica carinata HOM05D003155 ORTHO05D012487 1.4e-34 151.8 102 74.5
Duzib128G1406 Durio zibethinus HOM05D003867 ORTHO05D004593 5.0e-29 133.3 197 39.1
BcaC03g13232 Brassica carinata HOM05D003867 ORTHO05D004593 8.5e-29 132.5 69 95.7
FAN03G1235 Fragaria x ananassa HOM05D003867 ORTHO05D004593 2.5e-28 131.0 71 90.1
FAN15G0422 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.0e-26 125.6 68 88.2
Nn1g01167 Nelumbo nucifera HOM05D003867 ORTHO05D004593 8.8e-26 122.5 65 89.2
Nn1g01168 Nelumbo nucifera HOM05D003867 ORTHO05D004593 8.8e-26 122.5 65 89.2
FAN07G1961 Fragaria x ananassa HOM05D003867 ORTHO05D004593 4.4e-25 120.2 66 87.9
FAN08G0425 Fragaria x ananassa HOM05D003867 ORTHO05D004593 9.8e-25 119.0 66 86.4
GSVIVG01013345001 Vitis vinifera HOM05D003867 ORTHO05D004593 4.5e-22 110.2 67 71.6
Pp3c3_8640 Physcomitrium patens HOM05D003867 ORTHO05D004593 5.9e-22 109.8 65 80.0
Atru.chr11.2285 Acer truncatum HOM05D003867 ORTHO05D004593 1.5e-20 105.1 65 75.4
Pp3c13_10840 Physcomitrium patens HOM05D003867 ORTHO05D004593 1.2e-17 95.5 48 91.7
Hund25436 Selenicereus undatus HOM05D000424 ORTHO05D008586 5.4e-15 86.7 168 35.7
FvH4_1g23805 Fragaria vesca HOM05D000280 ORTHO05D000632 7.8e-14 82.8 71 59.2
FvH4_3g23161 Fragaria vesca HOM05D011771 ORTHO05D014214 2.9e-13 80.9 72 58.3
FvH4_3g31747 Fragaria vesca HOM05D011771 ORTHO05D014214 6.6e-13 79.7 72 58.3
FvH4_7g28392 Fragaria vesca HOM05D003867 ORTHO05D196806 3.1e-10 70.9 61 60.7
Duzib052G0593 Durio zibethinus HOM05D000222 ORTHO05D001350 3.5e-06 57.4 40 67.5


User provided reference genes

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