Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0092900 Rhododendron simsii HOM05D009300 ORTHO05D010234 6.1e-224 780.8 479 100.0
Rhsim02G0138000 Rhododendron simsii HOM05D009300 ORTHO05D010234 3.7e-104 382.9 205 91.7
Rhsim04G0140300 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.4e-95 354.4 345 65.8
vmacro04245 Vaccinium macrocarpon HOM05D017338 ORTHO05D010234 1.2e-65 255.0 307 47.9
vmacro12141 Vaccinium macrocarpon HOM05D009300 ORTHO05D010234 3.7e-64 250.0 302 45.4
vmacro00531 Vaccinium macrocarpon HOM05D009300 ORTHO05D010234 4.9e-64 249.6 329 43.5
Rhsim10G0179100 Rhododendron simsii HOM05D009300 ORTHO05D010234 9.5e-60 235.3 116 100.0
RhsimUnG0068400 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.7e-56 224.6 172 68.6
vmacro12139 Vaccinium macrocarpon HOM05D009300 ORTHO05D010234 2.3e-53 214.2 320 40.3
RhsimUnG0101600 Rhododendron simsii HOM05D009300 ORTHO05D010234 1.0e-50 205.3 337 38.3
Rhsim07G0158800 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.4e-50 204.9 321 39.9
RhsimUnG0074200 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.4e-50 204.9 388 36.6
vmacro13454 Vaccinium macrocarpon HOM05D009300 ORTHO05D010234 6.0e-46 189.5 309 38.5
Rhsim11G0014100 Rhododendron simsii HOM05D009300 ORTHO05D010234 1.3e-45 188.3 109 82.6
CSS0037204 Camellia sinensis var. sinensis HOM05D009300 ORTHO05D010234 9.5e-44 182.2 196 49.5
vmacro17806 Vaccinium macrocarpon HOM05D008549 ORTHO05D010234 1.4e-42 178.3 308 36.7
Rhsim10G0213800 Rhododendron simsii HOM05D008549 ORTHO05D010234 1.8e-42 177.9 317 35.3
vmacro23182 Vaccinium macrocarpon HOM05D008549 ORTHO05D010234 2.6e-41 174.1 280 37.5
CSS0010902 Camellia sinensis var. sinensis HOM05D009300 ORTHO05D010234 1.7e-40 171.4 200 47.5
CSS0047616 Camellia sinensis var. sinensis HOM05D009300 ORTHO05D010234 8.3e-40 169.1 216 44.9
vmacro14328 Vaccinium macrocarpon HOM05D009300 ORTHO05D010234 7.8e-38 162.5 316 34.2
Rhsim01G0128900 Rhododendron simsii HOM05D009300 ORTHO05D010234 1.0e-37 162.2 293 34.8
CSS0007178 Camellia sinensis var. sinensis HOM05D009300 ORTHO05D010234 3.0e-37 160.6 214 43.9
Rhsim06G0220100 Rhododendron simsii HOM05D008549 ORTHO05D010234 1.5e-36 158.3 290 33.8
CSS0023015 Camellia sinensis var. sinensis HOM05D017338 ORTHO05D010234 8.9e-34 149.1 169 47.3
CSS0029580 Camellia sinensis var. sinensis HOM05D017338 ORTHO05D010234 2.9e-32 144.1 163 45.4
CSS0037861 Camellia sinensis var. sinensis HOM05D017338 ORTHO05D010234 2.9e-32 144.1 163 45.4
CSS0039359 Camellia sinensis var. sinensis HOM05D017338 ORTHO05D010234 2.9e-32 144.1 163 45.4
CSS0005216 Camellia sinensis var. sinensis HOM05D017338 ORTHO05D010234 6.4e-32 142.9 151 47.0
Rhsim09G0060200 Rhododendron simsii HOM05D008549 ORTHO05D010234 1.2e-30 138.7 311 33.4
vmacro13356 Vaccinium macrocarpon HOM05D009300 ORTHO05D010234 6.6e-29 132.9 225 36.9
CSS0041515 Camellia sinensis var. sinensis HOM05D009300 ORTHO05D010234 4.3e-28 130.2 298 34.9
CSS0017527 Camellia sinensis var. sinensis HOM05D009300 ORTHO05D010234 5.6e-28 129.8 294 34.0
Rhsim05G0212100 Rhododendron simsii HOM05D007798 ORTHO05D009882 6.2e-27 126.3 293 31.7
CSS0027932 Camellia sinensis var. sinensis HOM05D017338 ORTHO05D010234 1.1e-26 125.6 184 39.1
CSS0040020 Camellia sinensis var. sinensis HOM05D009300 ORTHO05D010234 1.8e-26 124.8 209 37.8
vmacro14701 Vaccinium macrocarpon HOM05D008549 ORTHO05D010234 1.2e-25 122.1 180 33.9
vmacro14771 Vaccinium macrocarpon HOM05D008549 ORTHO05D010234 1.2e-25 122.1 180 33.9
Rhsim01G0063300 Rhododendron simsii HOM05D007798 ORTHO05D009882 5.8e-25 119.8 310 31.6
Rhsim03G0038000 Rhododendron simsii HOM05D009565 ORTHO05D012252 1.7e-24 118.2 246 34.6
CSS0001367 Camellia sinensis var. sinensis HOM05D009300 ORTHO05D010234 1.1e-23 115.5 284 31.0
CSS0004305 Camellia sinensis var. sinensis HOM05D017338 ORTHO05D010234 7.1e-23 112.8 153 41.8
Rhsim12G0114600 Rhododendron simsii HOM05D009565 ORTHO05D012252 7.1e-23 112.8 321 29.3
Rhsim11G0057000 Rhododendron simsii HOM05D007798 ORTHO05D009882 1.6e-22 111.7 294 30.6
Rhsim04G0237300 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.3e-21 108.6 170 38.8
Migut.F01288 Erythranthe guttata HOM05D000791 ORTHO05D000669 2.3e-21 107.8 296 29.4
Rhsim10G0126600 Rhododendron simsii HOM05D009565 ORTHO05D012252 3.0e-21 107.5 284 28.5
Rhsim11G0007300 Rhododendron simsii HOM05D007798 ORTHO05D009882 5.1e-21 106.7 271 29.5
Migut.N00810 Erythranthe guttata HOM05D000791 ORTHO05D000669 1.1e-20 105.5 294 29.3
Rhsim01G0183600 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.1e-20 105.5 132 43.2
Rhsim06G0127000 Rhododendron simsii HOM05D009565 ORTHO05D012252 1.1e-20 105.5 284 28.5
Rhsim02G0017800 Rhododendron simsii HOM05D007798 ORTHO05D009882 5.6e-20 103.2 297 29.3
Rhsim06G0076200 Rhododendron simsii HOM05D000107 ORTHO05D009882 5.6e-20 103.2 272 29.4
Rhsim04G0116500 Rhododendron simsii HOM05D008549 ORTHO05D010234 1.3e-19 102.1 137 42.3
Dinv11320 Davidia involucrata HOM05D000791 ORTHO05D000669 6.2e-19 99.8 302 27.5
Rhsim01G0150700 Rhododendron simsii HOM05D007798 ORTHO05D009882 1.1e-18 99.0 249 28.9
Rhsim03G0202300 Rhododendron simsii HOM05D017301 ORTHO05D000669 5.3e-18 96.7 290 31.0
Rhsim04G0111400 Rhododendron simsii HOM05D009565 ORTHO05D012252 6.9e-18 96.3 310 27.7
Rhsim06G0049000 Rhododendron simsii HOM05D009300 ORTHO05D010234 9.0e-18 95.9 320 29.1
Rhsim01G0156700 Rhododendron simsii HOM05D007798 ORTHO05D009882 3.4e-17 94.0 291 28.2
MBI12_g43234_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 4.9e-16 90.1 289 25.6
Rhsim05G0127300 Rhododendron simsii HOM05D024557 ORTHO05D010234 4.9e-16 90.1 245 26.9
MBI15_g15098_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 9.3e-15 85.9 280 25.7
MBI19_g27593_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.2e-14 85.5 284 27.1
MBI13_g12520_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.6e-14 85.1 290 26.6
vmacro01281 Vaccinium macrocarpon HOM05D017301 ORTHO05D000669 3.5e-14 84.0 240 31.7
Lj4g0021808 Lotus japonicus HOM05D001309 ORTHO05D000385 4.6e-14 83.6 282 28.7
Lj5g0025673 Lotus japonicus HOM05D001309 ORTHO05D000385 1.0e-13 82.4 280 27.5
PSO210G0630 Papaver somniferum HOM05D030578 ORTHO05D000669 1.8e-13 81.6 275 25.5
Rhsim01G0076100 Rhododendron simsii HOM05D000107 ORTHO05D000062 3.0e-13 80.9 186 31.2
PGR004G1992 Punica granatum HOM05D000791 ORTHO05D000669 6.7e-13 79.7 276 27.2
Rhsim07G0185300 Rhododendron simsii HOM05D000107 ORTHO05D003213 6.7e-13 79.7 106 47.2
Rhsim11G0024200 Rhododendron simsii HOM05D009565 ORTHO05D012252 6.7e-13 79.7 172 30.2
vmacro12701 Vaccinium macrocarpon HOM05D008549 ORTHO05D010234 6.7e-13 79.7 99 38.4
Hma1.2p1_0101F.1_g049380 Hydrangea macrophylla HOM05D005507 ORTHO05D009882 1.9e-12 78.2 170 30.6
Rhsim01G0162500 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.5e-12 77.8 157 33.1
Rhsim11G0006000 Rhododendron simsii HOM05D009565 ORTHO05D012252 3.3e-12 77.4 277 24.9
Rhsim06G0048900 Rhododendron simsii HOM05D009300 ORTHO05D010234 5.6e-12 76.6 115 40.0
TWI73G1228 Tripterygium wilfordii HOM05D003120 ORTHO05D003568 9.6e-12 75.9 297 24.2
TWI18G1095 Tripterygium wilfordii HOM05D003120 ORTHO05D003568 1.3e-11 75.5 297 24.2
Rhsim09G0079100 Rhododendron simsii HOM05D009565 ORTHO05D012252 2.1e-11 74.7 203 26.1
Rhsim01G0162400 Rhododendron simsii HOM05D000107 ORTHO05D000062 4.8e-11 73.6 140 33.6
MBI11_g22671_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 3.1e-10 70.9 290 24.1
MBI15_g13723_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 3.1e-10 70.9 239 24.7
Peaxi162Scf00878g00111 Petunia axillaris HOM05D003120 ORTHO05D003568 3.1e-10 70.9 276 23.9
MBI16_g20833_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 5.3e-10 70.1 163 25.8
TAR344G0001 Trochodendron aralioides HOM05D001309 ORTHO05D000385 5.3e-10 70.1 294 24.8
MBI14_g16528_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 6.9e-10 69.7 163 25.8
Dinv31455 Davidia involucrata HOM05D000791 ORTHO05D000669 9.0e-10 69.3 255 25.1
Sc11g0006850 Simmondsia chinensis HOM05D001309 ORTHO05D000385 9.0e-10 69.3 220 26.8
MBI08_g40514_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.2e-09 68.9 163 26.4
MBI07_g41667_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.5e-09 68.6 163 25.8
MBI14_g01819_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.5e-09 68.6 163 25.8
FvH4_1g01701 Fragaria vesca HOM05D002291 ORTHO05D000222 2.6e-09 67.8 308 26.0
FAN19G1637 Fragaria x ananassa HOM05D002291 ORTHO05D000222 2.6e-09 67.8 308 26.0
FAN28G2311 Fragaria x ananassa HOM05D002291 ORTHO05D000222 2.6e-09 67.8 308 26.0
MBI13_g26213_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 2.6e-09 67.8 163 25.8
MBI05_g11193_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 4.5e-09 67.0 158 26.6
CSS0036223 Camellia sinensis var. sinensis HOM05D009300 ORTHO05D010234 5.8e-09 66.6 73 46.6
Sopen01g033440 Solanum pennellii HOM05D003120 ORTHO05D003568 5.8e-09 66.6 298 22.5
MBI09_g45689_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 7.6e-09 66.2 160 25.6
MBI14_g32811_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 7.6e-09 66.2 151 27.2
MBI08_g18899_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 9.9e-09 65.9 158 25.9
Sed0000006 Sechium edule HOM05D000791 ORTHO05D001863 9.9e-09 65.9 255 25.5
CSS0007087 Camellia sinensis var. sinensis HOM05D009300 ORTHO05D010234 1.3e-08 65.5 50 60.0
Migut.B01385 Erythranthe guttata HOM05D023261 ORTHO05D000669 2.2e-08 64.7 293 25.6
MELO3C028240.2 Cucumis melo HOM05D001963 ORTHO05D001863 2.9e-08 64.3 165 29.7
MBI09_g33431_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 2.9e-08 64.3 211 26.1
MBI11_g33696_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 2.9e-08 64.3 163 24.5
Rhsim02G0136300 Rhododendron simsii HOM05D017301 ORTHO05D000669 2.9e-08 64.3 165 30.9
Lsat_1_v5_gn_8_112821 Lactuca sativa HOM05D009270 ORTHO05D011457 3.8e-08 63.9 257 24.5
MBI05_g15995_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 3.8e-08 63.9 163 24.5
MBI17_g38326_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 3.8e-08 63.9 143 27.3
Nitab4.5_0001199g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 3.8e-08 63.9 220 27.7
RcHm_v2.0_Chr2g0086631 Rosa chinensis HOM05D002291 ORTHO05D000222 3.8e-08 63.9 333 24.6
MELO3C034455.2 Cucumis melo HOM05D001963 ORTHO05D001863 4.9e-08 63.5 291 25.1
Dinv01181 Davidia involucrata HOM05D000791 ORTHO05D000669 4.9e-08 63.5 216 23.6
MBI14_g25533_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 4.9e-08 63.5 246 24.0
MBI18_g39301_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 4.9e-08 63.5 158 25.3
CSS0015616 Camellia sinensis var. sinensis HOM05D009300 ORTHO05D010234 6.4e-08 63.2 51 56.9
MBI11_g21812_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 6.4e-08 63.2 163 24.5
MBI17_g17142_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 8.4e-08 62.8 293 25.6
Nitab4.5_0000892g0160 Nicotiana tabacum HOM05D003120 ORTHO05D003568 8.4e-08 62.8 288 22.2
Nitab4.5_0006586g0010 Nicotiana tabacum HOM05D003120 ORTHO05D003568 1.1e-07 62.4 307 21.8
MELO3C027653.2 Cucumis melo HOM05D001963 ORTHO05D001863 1.4e-07 62.0 273 26.4
MBI08_g33250_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.9e-07 61.6 179 24.6
MBI09_g42525_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 3.2e-07 60.8 150 27.3
Nitab4.5_0004695g0040 Nicotiana tabacum HOM05D001309 ORTHO05D000385 3.2e-07 60.8 208 27.9
CSS0019759 Camellia sinensis var. sinensis HOM05D009300 ORTHO05D010234 4.2e-07 60.5 51 56.9
MELO3C030180.2 Cucumis melo HOM05D001963 ORTHO05D001863 4.2e-07 60.5 165 28.5
MELO3C034470.2 Cucumis melo HOM05D001963 ORTHO05D001863 4.2e-07 60.5 165 29.1
Dinv24767 Davidia involucrata HOM05D000791 ORTHO05D000669 4.2e-07 60.5 219 24.2
FvH4_3g22812 Fragaria vesca HOM05D023520 ORTHO05D025365 4.2e-07 60.5 289 22.8
COL.COLO4_24475 Corchorus olitorius HOM05D003120 ORTHO05D003568 5.5e-07 60.1 268 24.6
MBI14_g38741_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 5.5e-07 60.1 138 23.2
Rhsim07G0151700 Rhododendron simsii HOM05D009565 ORTHO05D012252 9.3e-07 59.3 153 28.1
MBI14_g38387_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.2e-06 58.9 158 25.3
MBI18_g07911_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.2e-06 58.9 281 23.1
HanXRQChr12g0361211 Helianthus annuus HOM05D009270 ORTHO05D011457 1.6e-06 58.5 190 26.3
MBI12_g16196_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.6e-06 58.5 228 26.3
Rhsim01G0102200 Rhododendron simsii HOM05D009565 ORTHO05D012252 1.6e-06 58.5 226 25.7
TAR622G0651 Trochodendron aralioides HOM05D000141 ORTHO05D000385 1.6e-06 58.5 284 21.1
TWI59G0531 Tripterygium wilfordii HOM05D003120 ORTHO05D003568 2.1e-06 58.2 210 23.8
TAR365G0123 Trochodendron aralioides HOM05D001309 ORTHO05D000385 2.1e-06 58.2 284 21.1
TAR369G0367 Trochodendron aralioides HOM05D001309 ORTHO05D000385 2.1e-06 58.2 284 21.1
MBI15_g01162_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 3.5e-06 57.4 163 23.9
MELO3C027970.2 Cucumis melo HOM05D001963 ORTHO05D001863 4.6e-06 57.0 171 30.4
Dinv16095 Davidia involucrata HOM05D000791 ORTHO05D000669 4.6e-06 57.0 201 23.9
ECA234G4013 Erigeron canadensis HOM05D009270 ORTHO05D011457 4.6e-06 57.0 259 24.3
MBI16_g11620_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 4.6e-06 57.0 281 25.6
MELO3C028156.2 Cucumis melo HOM05D001963 ORTHO05D001863 7.9e-06 56.2 159 29.6
MELO3C031469.2 Cucumis melo HOM05D001963 ORTHO05D001863 7.9e-06 56.2 162 28.4
MBI19_g30599_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 7.9e-06 56.2 205 26.3
SGA_v2.0_scaffold752G53551 Striga asiatica HOM05D025956 ORTHO05D000669 7.9e-06 56.2 301 23.6
Zm00001eb384030 Zea mays HOM05D009009 ORTHO05D016371 7.9e-06 56.2 304 22.4


User provided reference genes

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