Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0091100 Rhododendron simsii HOM05D004039 ORTHO05D004573 3.8e-118 428.3 237 100.0
CSS0018669 Camellia sinensis var. sinensis HOM05D004039 ORTHO05D004573 2.9e-41 172.9 196 56.6
Hma1.2p1_0738F.1_g210940 Hydrangea macrophylla HOM05D004039 ORTHO05D004573 4.4e-34 149.1 190 52.6
Oeu010264.1 Olea europaea HOM05D004039 ORTHO05D004573 4.6e-31 139.0 187 50.8
Manes.08G099400 Manihot esculenta HOM05D004039 ORTHO05D004573 1.0e-30 137.9 187 48.1
Dinv06937 Davidia involucrata HOM05D004039 ORTHO05D004573 3.9e-30 136.0 190 51.1
TWI75G0895 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 8.6e-30 134.8 194 46.4
Cfa009471 Carpinus fangiana HOM05D004039 ORTHO05D004573 1.2e-28 131.0 188 46.3
Potri.003G160300 Populus trichocarpa HOM05D004039 ORTHO05D004573 2.8e-28 129.8 190 47.4
Atru.chr12.1473 Acer truncatum HOM05D004039 ORTHO05D004573 6.2e-28 128.6 189 47.1
Cpa.g.sc686.1 Carica papaya HOM05D004039 ORTHO05D004573 1.1e-27 127.9 187 44.4
Haze_12527 Corylus avellana HOM05D004039 ORTHO05D004573 2.3e-27 126.7 189 46.6
Sabra03G0116500 Salix brachista HOM05D004039 ORTHO05D004573 2.3e-27 126.7 193 46.1
Eucgr.B03568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 4.0e-27 125.9 191 45.0
QL03p048351 Quercus lobata HOM05D004039 ORTHO05D004573 6.8e-27 125.2 189 45.0
Prupe.1G211600 Prunus persica HOM05D004039 ORTHO05D004573 2.0e-26 123.6 189 45.0
GSVIVG01032947001 Vitis vinifera HOM05D004039 ORTHO05D004573 2.6e-26 123.2 194 44.3
A02p37190 Brassica napus HOM05D004039 ORTHO05D004573 5.8e-26 122.1 193 44.0
Ciclev10030001m.g Citrus clementina HOM05D004039 ORTHO05D004573 7.6e-26 121.7 189 45.5
Gohir.D12G146700 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.3e-25 120.9 189 43.9
Gorai.008G157900 Gossypium raimondii HOM05D004039 ORTHO05D004573 1.3e-25 120.9 193 46.1
Lalb_Chr24g0402991 Lupinus albus HOM05D004039 ORTHO05D004573 1.3e-25 120.9 199 43.7
THA.LOC104801433 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 1.3e-25 120.9 191 44.0
TAR374G0420 Trochodendron aralioides HOM05D004039 ORTHO05D004573 1.3e-25 120.9 182 45.6
MELO3C026747.2 Cucumis melo HOM05D004039 ORTHO05D004573 1.7e-25 120.6 190 42.6
Thhalv10005412m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 1.7e-25 120.6 195 44.1
Gohir.A12G141800 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.7e-25 120.6 189 44.4
CiPaw.06G111200 Carya illinoinensis HOM05D004039 ORTHO05D004573 2.2e-25 120.2 191 44.0
Peaxi162Scf00047g00153 Petunia axillaris HOM05D004039 ORTHO05D004573 4.9e-25 119.0 175 44.6
VMungo1302G0001 Vigna mungo HOM05D004039 ORTHO05D004573 4.9e-25 119.0 189 42.3
Glyma.19G106500 Glycine max HOM05D004039 ORTHO05D004573 6.4e-25 118.6 193 42.5
BcaB04g19545 Brassica carinata HOM05D004039 ORTHO05D004573 8.3e-25 118.2 195 42.1
Lalb_Chr14g0364131 Lupinus albus HOM05D004039 ORTHO05D004573 8.3e-25 118.2 191 43.5
Sabra01G0049400 Salix brachista HOM05D004039 ORTHO05D004573 1.1e-24 117.9 181 45.3
Glyma.16G045200 Glycine max HOM05D004039 ORTHO05D004573 1.4e-24 117.5 199 42.7
BcaB07g29998 Brassica carinata HOM05D004039 ORTHO05D004573 2.4e-24 116.7 193 44.6
BraA02t08705Z Brassica rapa HOM05D004039 ORTHO05D004573 2.4e-24 116.7 193 44.0
CiPaw.05G098500 Carya illinoinensis HOM05D004039 ORTHO05D004573 2.4e-24 116.7 187 42.8
MD13G1134000 Malus domestica HOM05D004039 ORTHO05D004573 2.4e-24 116.7 188 42.6
Phvul.001G098500 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 2.4e-24 116.7 188 42.6
Cc02_g30640 Coffea canephora HOM05D004039 ORTHO05D004573 4.1e-24 115.9 196 43.9
MD16G1144600 Malus domestica HOM05D004039 ORTHO05D004573 4.1e-24 115.9 189 44.4
Manes.11G073200 Manihot esculenta HOM05D004039 ORTHO05D004573 4.1e-24 115.9 197 43.7
THA.LOC104827510 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 7.1e-24 115.2 192 43.2
Aa31LG3G14220 Aethionema arabicum HOM05D004039 ORTHO05D004573 1.2e-23 114.4 195 42.6
PGR102G1502 Punica granatum HOM05D004039 ORTHO05D004573 1.2e-23 114.4 187 42.8
BcaC03g17621 Brassica carinata HOM05D004039 ORTHO05D004573 1.6e-23 114.0 193 43.0
C02p56210 Brassica napus HOM05D004039 ORTHO05D004573 1.6e-23 114.0 193 43.0
BolC2t11677H Brassica oleracea HOM05D004039 ORTHO05D004573 1.6e-23 114.0 193 43.0
COL.COLO4_07108 Corchorus olitorius HOM05D004039 ORTHO05D004573 1.6e-23 114.0 188 42.0
Lj1g0002386 Lotus japonicus HOM05D004039 ORTHO05D004573 1.6e-23 114.0 196 40.3
Thecc.04G052000 Theobroma cacao HOM05D004039 ORTHO05D004573 1.6e-23 114.0 197 40.1
BcaC04g23799 Brassica carinata HOM05D004039 ORTHO05D004573 2.1e-23 113.6 195 42.1
Manes.04G096800 Manihot esculenta HOM05D004039 ORTHO05D004573 2.1e-23 113.6 189 38.1
BraA09t36066Z Brassica rapa HOM05D004039 ORTHO05D004573 2.7e-23 113.2 188 42.6
HanXRQChr10g0319941 Helianthus annuus HOM05D004039 ORTHO05D004573 4.6e-23 112.5 188 44.1
ClCG10G013010 Citrullus lanatus HOM05D004039 ORTHO05D004573 7.8e-23 111.7 190 40.5
BolC9t53384H Brassica oleracea HOM05D004039 ORTHO05D004573 1.0e-22 111.3 195 41.5
FvH4_4g22190 Fragaria vesca HOM05D004039 ORTHO05D004573 1.0e-22 111.3 188 42.6
COL.COLO4_13404 Corchorus olitorius HOM05D004039 ORTHO05D004573 3.0e-22 109.8 201 38.3
PGSC0003DMG400011591 Solanum tuberosum HOM05D004039 ORTHO05D004573 3.0e-22 109.8 174 46.0
HPP92_025084 Vanilla planifolia HOM05D004039 ORTHO05D004573 3.0e-22 109.8 197 40.1
RcHm_v2.0_Chr4g0428421 Rosa chinensis HOM05D004039 ORTHO05D004573 3.9e-22 109.4 192 43.2
MBI11_g23197_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 8.6e-22 108.2 187 41.2
AL8G19920 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 1.1e-21 107.8 195 39.0
Nitab4.5_0019080g0010 Nicotiana tabacum HOM05D004039 ORTHO05D004573 1.1e-21 107.8 199 41.7
AT5G47920 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 1.5e-21 107.5 195 39.0
FAN17G1354 Fragaria x ananassa HOM05D004039 ORTHO05D004573 1.5e-21 107.5 188 42.0
Sc11g0000030 Simmondsia chinensis HOM05D004039 ORTHO05D004573 1.5e-21 107.5 196 43.4
Gorai.006G002900 Gossypium raimondii HOM05D004039 ORTHO05D004573 1.9e-21 107.1 188 39.9
A09p04290 Brassica napus HOM05D004039 ORTHO05D004573 2.5e-21 106.7 181 40.9
Sed0004494 Sechium edule HOM05D004039 ORTHO05D004573 2.5e-21 106.7 190 41.6
CARHR291780 Cardamine hirsuta HOM05D004039 ORTHO05D004573 3.3e-21 106.3 195 43.1
Gohir.D09G002400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 3.3e-21 106.3 188 39.9
PGR042G1501 Punica granatum HOM05D004039 ORTHO05D004573 3.3e-21 106.3 208 37.5
CAN.G1588.13 Capsicum annuum HOM05D004039 ORTHO05D004573 4.3e-21 105.9 192 41.1
FAN07G2708 Fragaria x ananassa HOM05D004039 ORTHO05D004573 4.3e-21 105.9 188 41.5
Sopen09g034240 Solanum pennellii HOM05D004039 ORTHO05D004573 5.6e-21 105.5 192 42.7
Duzib187G1305 Durio zibethinus HOM05D004039 ORTHO05D004573 7.3e-21 105.1 198 44.9
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 9.6e-21 104.8 193 37.8
Potri.014G140000 Populus trichocarpa HOM05D004039 ORTHO05D004573 1.2e-20 104.4 189 38.6
Solyc09g091270.3 Solanum lycopersicum HOM05D004039 ORTHO05D004573 2.1e-20 103.6 172 44.2
QL02p068241 Quercus lobata HOM05D004039 ORTHO05D004573 3.6e-20 102.8 200 38.5
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 4.7e-20 102.4 180 43.3
BcaC06g30835 Brassica carinata HOM05D004039 ORTHO05D004573 4.7e-20 102.4 195 40.0
C09p04550 Brassica napus HOM05D004039 ORTHO05D004573 4.7e-20 102.4 195 40.5
Carub.0008s0748 Capsella rubella HOM05D004039 ORTHO05D004573 6.2e-20 102.1 196 39.8
Duzib205G0448 Durio zibethinus HOM05D001017 ORTHO05D001025 1.1e-19 101.3 188 39.4
Gohir.D03G099900 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.1e-19 101.3 188 41.5
Gorai.003G105000 Gossypium raimondii HOM05D004039 ORTHO05D004573 1.1e-19 101.3 188 41.5
Ah.16g104320 Amaranthus hybridus HOM05D004039 ORTHO05D004573 1.8e-19 100.5 191 36.6
Cpa.g.sc70.36 Carica papaya HOM05D004039 ORTHO05D004573 1.8e-19 100.5 188 38.8
CANSAT64G1067 Cannabis sativa HOM05D004039 ORTHO05D004573 2.4e-19 100.1 182 39.6
PSO017G5432 Papaver somniferum HOM05D004039 ORTHO05D004573 2.4e-19 100.1 181 40.3
Gohir.A03G073400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 3.1e-19 99.8 188 41.0
Sp2g18420 Schrenkiella parvula HOM05D004039 ORTHO05D004573 3.1e-19 99.8 182 41.8
Psat3g089920 Pisum sativum HOM05D004039 ORTHO05D004573 5.2e-19 99.0 196 38.3
AUR62031493 Chenopodium quinoa HOM05D004039 ORTHO05D004573 8.9e-19 98.2 205 37.6
PSO478G3045 Papaver somniferum HOM05D004039 ORTHO05D004573 8.9e-19 98.2 181 39.8
Gohir.A09G002600 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.2e-18 97.8 188 38.3
Haze_14987 Corylus avellana HOM05D004039 ORTHO05D004573 1.5e-18 97.4 206 35.9
Thecc.01G239800 Theobroma cacao HOM05D004039 ORTHO05D004573 1.5e-18 97.4 188 40.4
AUR62012365 Chenopodium quinoa HOM05D004039 ORTHO05D004573 3.4e-18 96.3 193 37.8
Migut.K01132 Erythranthe guttata HOM05D004039 ORTHO05D004573 3.4e-18 96.3 200 39.5
Medtr7g084710 Medicago truncatula HOM05D004039 ORTHO05D004573 3.4e-18 96.3 200 37.0
EL10Ac2g04246 Beta vulgaris HOM05D004039 ORTHO05D004573 4.4e-18 95.9 199 38.2
ECA248G3450 Erigeron canadensis HOM05D000009 ORTHO05D000008 4.4e-18 95.9 78 67.9
Psat3g090520 Pisum sativum HOM05D004039 ORTHO05D004573 4.4e-18 95.9 189 38.1
Medtr7g084740 Medicago truncatula HOM05D004039 ORTHO05D004573 5.8e-18 95.5 199 36.7
BolC7t44401H Brassica oleracea HOM05D004039 ORTHO05D004573 7.6e-18 95.1 197 40.6
Ca_08235_v3 Cicer arietinum L. HOM05D004039 ORTHO05D004573 9.9e-18 94.7 206 35.0
ATR0582G327 Amborella trichopoda HOM05D004039 ORTHO05D004573 1.3e-17 94.4 189 39.7
Ciclev10016691m.g Citrus clementina HOM05D004039 ORTHO05D004573 3.8e-17 92.8 196 35.2
A06p39450 Brassica napus HOM05D004039 ORTHO05D004573 4.9e-17 92.4 195 39.5
C07p38820 Brassica napus HOM05D004039 ORTHO05D004573 4.9e-17 92.4 195 39.5
BraA06t26860Z Brassica rapa HOM05D004039 ORTHO05D004573 4.9e-17 92.4 195 39.5
Nitab4.5_0002182g0030 Nicotiana tabacum HOM05D004039 ORTHO05D004573 1.1e-16 91.3 78 65.4
TPR.G31659 Trifolium pratense HOM05D004039 ORTHO05D004573 1.1e-16 91.3 206 42.2
Glyma.02G068200 Glycine max HOM05D004039 ORTHO05D004573 2.4e-16 90.1 237 32.1
Cfa007136 Carpinus fangiana HOM05D004039 ORTHO05D004573 7.1e-16 88.6 200 36.5
Lalb_Chr21g0317001 Lupinus albus HOM05D004039 ORTHO05D004573 7.1e-16 88.6 195 34.4
Eucgr.I01568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 2.1e-15 87.0 187 36.4
MD17G1003900 Malus domestica HOM05D004039 ORTHO05D004573 2.1e-15 87.0 209 33.0
SHI11395 Sapria himalayana HOM05D004039 ORTHO05D004573 2.1e-15 87.0 198 34.3
CDE05G3127 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 2.7e-15 86.7 193 35.2
Phvul.004G067800 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 2.7e-15 86.7 203 36.9
Medtr7g084720 Medicago truncatula HOM05D004039 ORTHO05D004573 3.5e-15 86.3 189 35.4
Atru.chr6.2731 Acer truncatum HOM05D004039 ORTHO05D004573 4.6e-15 85.9 206 37.4
Zm00001eb085640 Zea mays HOM05D004039 ORTHO05D004573 4.6e-15 85.9 200 38.5
Psat3g090560 Pisum sativum HOM05D004039 ORTHO05D004573 1.7e-14 84.0 226 33.2
DCAR_031611 Daucus carota HOM05D004039 ORTHO05D004573 2.3e-14 83.6 191 39.8
MBI07_g42011_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 3.0e-14 83.2 226 33.2
GSVIVG01001118001 Vitis vinifera HOM05D004039 ORTHO05D011171 3.9e-14 82.8 91 49.5
CsaV3_3G032870 Cucumis sativus L. HOM05D004039 ORTHO05D004573 5.1e-14 82.4 189 33.9
TWI12G1264 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 7.3e-13 78.6 180 33.3
Nn3g16207 Nelumbo nucifera HOM05D004039 ORTHO05D004573 9.6e-13 78.2 188 34.0
Prupe.3G315300 Prunus persica HOM05D004039 ORTHO05D004573 1.3e-12 77.8 210 31.0
AT5G13880 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 4.8e-12 75.9 183 32.2
Thhalv10014767m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 6.2e-12 75.5 181 33.7
BraA10t44513Z Brassica rapa HOM05D004039 ORTHO05D004573 8.1e-12 75.1 181 33.7
BcaC04g24246 Brassica carinata HOM05D004039 ORTHO05D004573 3.1e-11 73.2 179 31.8
Sp6g30120 Schrenkiella parvula HOM05D004039 ORTHO05D004573 3.1e-11 73.2 181 33.1
C03p07240 Brassica napus HOM05D004039 ORTHO05D004573 4.0e-11 72.8 173 34.7
BolC3t13225H Brassica oleracea HOM05D004039 ORTHO05D004573 4.0e-11 72.8 173 34.7
Aqoxy3G01771 Aquilegia oxysepala HOM05D004039 ORTHO05D004573 5.3e-11 72.4 77 51.9
AL6G24520 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 9.0e-11 71.6 186 31.2
Rhsim08G0037500 Rhododendron simsii HOM05D004039 ORTHO05D000739 1.5e-10 70.9 201 32.8
BcaC04g19071 Brassica carinata HOM05D004039 ORTHO05D004573 2.0e-10 70.5 181 30.9
C09p63220 Brassica napus HOM05D004039 ORTHO05D004573 2.0e-10 70.5 181 30.9
BolC9t59158H Brassica oleracea HOM05D004039 ORTHO05D004573 2.0e-10 70.5 181 30.9
A03p06250 Brassica napus HOM05D004039 ORTHO05D004573 7.6e-10 68.6 173 31.8
BraA03t09957Z Brassica rapa HOM05D004039 ORTHO05D004573 7.6e-10 68.6 173 31.8
Carub.0006s1207 Capsella rubella HOM05D004039 ORTHO05D004573 7.6e-10 68.6 180 29.4
Eucgr.G01911 Eucalyptus grandis HOM05D004039 ORTHO05D004573 7.6e-10 68.6 195 32.3
SGA_v2.0_scaffold258G45761 Striga asiatica HOM05D004039 ORTHO05D004573 7.6e-10 68.6 78 51.3
A10p24480 Brassica napus HOM05D004039 ORTHO05D004573 2.2e-09 67.0 180 34.4
CARHR199550 Cardamine hirsuta HOM05D004039 ORTHO05D004573 2.2e-09 67.0 173 31.2
TPR.G31663 Trifolium pratense HOM05D004039 ORTHO05D004573 4.9e-09 65.9 91 46.2
BcaB01g05331 Brassica carinata HOM05D004039 ORTHO05D004573 3.2e-08 63.2 176 33.5
Os04g0382400 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 3.2e-08 63.2 192 31.2
CiPaw.14G093600 Carya illinoinensis HOM05D004039 ORTHO05D004573 1.6e-07 60.8 211 28.4
Zm00001eb181000 Zea mays HOM05D004039 ORTHO05D004573 6.0e-07 58.9 185 34.6
MELO3C014757.2 Cucumis melo HOM05D004039 ORTHO05D004573 1.7e-06 57.4 73 42.5
CsaV3_3G020070 Cucumis sativus L. HOM05D004039 ORTHO05D004573 1.7e-06 57.4 73 42.5


User provided reference genes

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