Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0084800 Rhododendron simsii HOM05D008112 ORTHO05D010225 3.2e-53 211.5 104 100.0
Hma1.2p1_0061F.1_g033900 Hydrangea macrophylla HOM05D008112 ORTHO05D010225 3.7e-17 91.7 91 52.7
CSS0024667 Camellia sinensis var. sinensis HOM05D008112 ORTHO05D010225 2.6e-15 85.5 113 47.8
Manes.06G068400 Manihot esculenta HOM05D008112 ORTHO05D010225 4.6e-12 74.7 109 45.9
Manes.14G102600 Manihot esculenta HOM05D008112 ORTHO05D010225 4.6e-12 74.7 97 43.3
Cfa018594 Carpinus fangiana HOM05D008112 ORTHO05D010225 7.9e-12 73.9 111 42.3
TAR622G0251 Trochodendron aralioides HOM05D008112 ORTHO05D010225 7.9e-12 73.9 110 45.5
Dinv31638 Davidia involucrata HOM05D008112 ORTHO05D010225 1.4e-11 73.2 66 57.6
FAN22G0823 Fragaria x ananassa HOM05D008112 ORTHO05D010225 3.0e-11 72.0 118 37.3
FvH4_4g27360 Fragaria vesca HOM05D008112 ORTHO05D010225 3.9e-11 71.6 111 38.7
FAN12G3697 Fragaria x ananassa HOM05D008112 ORTHO05D010225 3.9e-11 71.6 111 38.7
FAN12G3827 Fragaria x ananassa HOM05D008112 ORTHO05D010225 3.9e-11 71.6 111 38.7
TAR371G0405 Trochodendron aralioides HOM05D008112 ORTHO05D010225 3.9e-11 71.6 89 46.1
DCAR_023658 Daucus carota HOM05D008112 ORTHO05D010225 5.1e-11 71.2 108 38.9
FAN07G1645 Fragaria x ananassa HOM05D008112 ORTHO05D010225 8.8e-11 70.5 118 37.3
Thecc.02G230800 Theobroma cacao HOM05D008112 ORTHO05D010225 8.8e-11 70.5 78 51.3
Gorai.005G190400 Gossypium raimondii HOM05D008112 ORTHO05D010225 1.5e-10 69.7 104 45.2
Haze_17483 Corylus avellana HOM05D008112 ORTHO05D010225 2.0e-10 69.3 99 40.4
Migut.E00342 Erythranthe guttata HOM05D008112 ORTHO05D010225 2.5e-10 68.9 102 40.2
Gohir.D02G169900 Gossypium hirsutum HOM05D008112 ORTHO05D010225 2.5e-10 68.9 104 45.2
Ciclev10017355m.g Citrus clementina HOM05D008112 ORTHO05D010225 5.7e-10 67.8 85 43.5
RcHm_v2.0_Chr4g0435171 Rosa chinensis HOM05D008112 ORTHO05D010225 5.7e-10 67.8 116 37.1
Potri.008G120800 Populus trichocarpa HOM05D008112 ORTHO05D010225 7.4e-10 67.4 112 40.2
Lsat_1_v5_gn_4_17580 Lactuca sativa HOM05D008112 ORTHO05D010225 9.7e-10 67.0 102 43.1
Nn3g17844 Nelumbo nucifera HOM05D008112 ORTHO05D010225 1.7e-09 66.2 98 42.9
Medtr1g110820 Medicago truncatula HOM05D008112 ORTHO05D010225 3.7e-09 65.1 104 38.5
Prupe.1G311100 Prunus persica HOM05D008112 ORTHO05D010225 3.7e-09 65.1 98 41.8
Gohir.A03G146800 Gossypium hirsutum HOM05D008112 ORTHO05D010225 4.8e-09 64.7 104 44.2
Potri.010G124900 Populus trichocarpa HOM05D008112 ORTHO05D010225 4.8e-09 64.7 110 43.6
SGA_v2.0_scaffold124G33520 Striga asiatica HOM05D008112 ORTHO05D010225 6.3e-09 64.3 103 43.7
Glyma.08G262400 Glycine max HOM05D008112 ORTHO05D010225 8.2e-09 63.9 92 45.7
Glyma.20G115800 Glycine max HOM05D008112 ORTHO05D010225 8.2e-09 63.9 95 43.2
Atru.chr11.70 Acer truncatum HOM05D008112 ORTHO05D010225 1.1e-08 63.5 104 39.4
Glyma.10G274200 Glycine max HOM05D008112 ORTHO05D010225 1.4e-08 63.2 108 41.7
SalBow8G4149 Salvia bowleyana HOM05D008112 ORTHO05D010225 1.8e-08 62.8 102 41.2
Lalb_Chr06g0166071 Lupinus albus HOM05D008112 ORTHO05D010225 3.1e-08 62.0 86 47.7
Cpa.g.sc1.41 Carica papaya HOM05D008112 ORTHO05D010225 6.9e-08 60.8 93 40.9
TAR629G1885 Trochodendron aralioides HOM05D008112 ORTHO05D010225 6.9e-08 60.8 74 43.2
TPR.G1513 Trifolium pratense HOM05D008112 ORTHO05D010225 9.1e-08 60.5 104 38.5
Sed0024639 Sechium edule HOM05D008112 ORTHO05D010225 1.2e-07 60.1 100 36.0
Lalb_Chr02g0145981 Lupinus albus HOM05D008112 ORTHO05D010225 2.6e-07 58.9 113 38.9
Lj2g0015777 Lotus japonicus HOM05D008112 ORTHO05D010225 4.5e-07 58.2 89 43.8
Aa31LG2G6430 Aethionema arabicum HOM05D010264 ORTHO05D012423 1.0e-06 57.0 72 47.2
Thhalv10005195m.g Eutrema salsugineum HOM05D010264 ORTHO05D012423 1.0e-06 57.0 91 41.8
Lalb_Chr10g0100011 Lupinus albus HOM05D008112 ORTHO05D010225 1.0e-06 57.0 108 40.7
Sc11g0003420 Simmondsia chinensis HOM05D008112 ORTHO05D010225 1.7e-06 56.2 123 34.1
MELO3C012251.2 Cucumis melo HOM05D008112 ORTHO05D010225 2.9e-06 55.5 89 38.2
CiPaw.16G065000 Carya illinoinensis HOM05D008112 ORTHO05D010225 3.8e-06 55.1 109 32.1
ECA246G3993 Erigeron canadensis HOM05D008112 ORTHO05D010225 3.8e-06 55.1 100 37.0
MSTRG.840 Avicennia marina HOM05D008112 ORTHO05D010225 5.0e-06 54.7 111 32.4
Lj5g0021475 Lotus japonicus HOM05D008112 ORTHO05D010225 5.0e-06 54.7 96 41.7
Lalb_Chr17g0342121 Lupinus albus HOM05D008112 ORTHO05D010225 6.5e-06 54.3 91 44.0
Phvul.007G027300 Phaseolus vulgaris HOM05D008112 ORTHO05D010225 6.5e-06 54.3 79 44.3
BolC2t11328H Brassica oleracea HOM05D010264 ORTHO05D012423 8.5e-06 53.9 90 38.9


User provided reference genes

Program Settings