Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0077600 Rhododendron simsii HOM05D004550 ORTHO05D005340 3.2e-122 441.8 227 100.0
CSS0021997 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 2.8e-102 375.6 225 84.0
CSS0045485 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 2.4e-101 372.5 225 83.6
Actinidia31956 Actinidia chinensis HOM05D004550 ORTHO05D005340 4.4e-100 368.2 227 81.5
vmacro01339 Vaccinium macrocarpon HOM05D004550 ORTHO05D005340 6.4e-99 364.4 310 66.1
Dinv34106 Davidia involucrata HOM05D004550 ORTHO05D005340 1.5e-95 353.2 224 79.9
Cfa008917 Carpinus fangiana HOM05D004550 ORTHO05D005340 1.2e-89 333.6 226 76.1
QL03p070023 Quercus lobata HOM05D004550 ORTHO05D005340 7.8e-89 330.9 226 74.8
Hma1.2p1_0354F.1_g133690 Hydrangea macrophylla HOM05D004550 ORTHO05D005340 3.0e-88 328.9 225 75.1
CiPaw.06G089400 Carya illinoinensis HOM05D004550 ORTHO05D005340 3.9e-88 328.6 227 72.7
Nitab4.5_0000334g0090 Nicotiana tabacum HOM05D004550 ORTHO05D005340 2.5e-87 325.9 226 72.1
TAR629G0577 Trochodendron aralioides HOM05D004550 ORTHO05D005340 4.3e-87 325.1 225 71.6
Migut.L01230 Erythranthe guttata HOM05D004550 ORTHO05D005340 7.3e-87 324.3 227 73.6
Nitab4.5_0011843g0010 Nicotiana tabacum HOM05D004550 ORTHO05D005340 1.4e-85 320.1 226 71.2
Atru.chr11.1702 Acer truncatum HOM05D004550 ORTHO05D005340 4.0e-85 318.5 226 72.6
CAN.G1200.3 Capsicum annuum HOM05D004550 ORTHO05D005340 1.2e-84 317.0 225 70.7
CiPaw.05G128700 Carya illinoinensis HOM05D004550 ORTHO05D005340 5.8e-84 314.7 227 69.6
MSTRG.7770 Avicennia marina HOM05D004550 ORTHO05D005340 9.9e-84 313.9 227 71.4
PGSC0003DMG400028333 Solanum tuberosum HOM05D004550 ORTHO05D005340 2.9e-83 312.4 226 69.0
Solyc05g012710.4 Solanum lycopersicum HOM05D004550 ORTHO05D005340 3.8e-83 312.0 226 69.5
Sopen05g007540 Solanum pennellii HOM05D004550 ORTHO05D005340 1.1e-82 310.5 226 69.0
Cc11_g12470 Coffea canephora HOM05D004550 ORTHO05D005340 1.4e-82 310.1 226 71.2
GSVIVG01001334001 Vitis vinifera HOM05D004550 ORTHO05D005340 1.4e-82 310.1 227 70.0
Duzib268G1083 Durio zibethinus HOM05D004550 ORTHO05D005340 1.9e-82 309.7 226 68.6
Duzib251G0963 Durio zibethinus HOM05D004550 ORTHO05D005340 2.4e-82 309.3 227 70.5
Actinidia19927 Actinidia chinensis HOM05D004550 ORTHO05D005340 5.4e-82 308.1 208 76.4
DCAR_030983 Daucus carota HOM05D004550 ORTHO05D005340 5.4e-82 308.1 226 70.4
Gohir.D12G165500 Gossypium hirsutum HOM05D004550 ORTHO05D005340 7.1e-82 307.8 226 69.0
Gorai.008G178200 Gossypium raimondii HOM05D004550 ORTHO05D005340 7.1e-82 307.8 226 69.0
Nn3g17356 Nelumbo nucifera HOM05D004550 ORTHO05D005340 9.3e-82 307.4 225 67.1
Peaxi162Scf00364g00223 Petunia axillaris HOM05D004550 ORTHO05D005340 1.3e-80 303.5 225 68.0
Thecc.02G338200 Theobroma cacao HOM05D004550 ORTHO05D005340 1.3e-80 303.5 227 68.7
Gohir.A12G162200 Gossypium hirsutum HOM05D004550 ORTHO05D005340 2.3e-80 302.8 226 68.1
Ciclev10032704m.g Citrus clementina HOM05D004550 ORTHO05D005340 6.7e-80 301.2 226 69.9
TWI31G0520 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 6.7e-80 301.2 226 68.6
Prupe.1G281100 Prunus persica HOM05D004550 ORTHO05D005340 1.5e-79 300.1 227 68.7
Eucgr.B03186 Eucalyptus grandis HOM05D004550 ORTHO05D005340 4.3e-79 298.5 228 67.1
Nn4g23307 Nelumbo nucifera HOM05D004550 ORTHO05D005340 4.3e-79 298.5 227 67.8
FAN07G0354 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.3e-78 297.0 226 67.7
FAN17G0531 Fragaria x ananassa HOM05D004550 ORTHO05D005340 2.1e-78 296.2 226 67.7
RcHm_v2.0_Chr4g0438981 Rosa chinensis HOM05D004550 ORTHO05D005340 6.2e-78 294.7 226 68.1
FvH4_4g30590 Fragaria vesca HOM05D004550 ORTHO05D005340 2.4e-77 292.7 226 67.3
VMungo1215G2831 Vigna mungo HOM05D004550 ORTHO05D005340 3.1e-77 292.4 231 67.1
Manes.05G107100 Manihot esculenta HOM05D004550 ORTHO05D005340 1.2e-76 290.4 228 65.4
Phvul.002G090800 Phaseolus vulgaris HOM05D004550 ORTHO05D005340 1.5e-76 290.0 231 66.2
TWI79G1514 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 2.0e-76 289.7 226 68.6
ClCG09G021950 Citrullus lanatus HOM05D004550 ORTHO05D005340 4.5e-76 288.5 227 65.6
MBI19_g03106_MAGBIO Magnolia biondii HOM05D004550 ORTHO05D005340 5.8e-76 288.1 227 65.6
PSO063G6186 Papaver somniferum HOM05D004550 ORTHO05D005340 1.3e-75 287.0 229 64.6
CsaV3_5G025150 Cucumis sativus L. HOM05D004550 ORTHO05D005340 2.9e-75 285.8 227 64.8
DCAR_007179 Daucus carota HOM05D004550 ORTHO05D005340 2.9e-75 285.8 226 65.0
Potri.010G162600 Populus trichocarpa HOM05D004550 ORTHO05D005340 2.9e-75 285.8 228 66.2
Glyma.02G112600 Glycine max HOM05D004550 ORTHO05D005340 3.8e-75 285.4 229 65.9
PGR102G3210 Punica granatum HOM05D004550 ORTHO05D005340 3.8e-75 285.4 228 65.8
Sed0017620 Sechium edule HOM05D004550 ORTHO05D005340 4.9e-75 285.0 227 64.8
Aqoxy3G03523 Aquilegia oxysepala HOM05D004550 ORTHO05D005340 1.4e-74 283.5 229 65.1
Lsat_1_v5_gn_8_46800 Lactuca sativa HOM05D004550 ORTHO05D005340 4.2e-74 282.0 228 65.8
FAN22G1576 Fragaria x ananassa HOM05D004550 ORTHO05D005340 7.1e-74 281.2 226 65.0
PSO063G5570 Papaver somniferum HOM05D004550 ORTHO05D005340 7.1e-74 281.2 229 62.9
Glyma.01G054200 Glycine max HOM05D004550 ORTHO05D005340 1.6e-73 280.0 229 64.6
Lalb_Chr17g0340931 Lupinus albus HOM05D004550 ORTHO05D005340 4.6e-73 278.5 231 65.4
FAN12G3802 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.0e-72 277.3 218 67.0
Potri.008G092300 Populus trichocarpa HOM05D004550 ORTHO05D005340 3.9e-72 275.4 228 64.0
SGA_v2.0_scaffold36G14423 Striga asiatica HOM05D004550 ORTHO05D005340 3.9e-72 275.4 230 65.2
CANSAT64G2188 Cannabis sativa HOM05D004550 ORTHO05D005340 6.7e-72 274.6 231 61.5
Ca_27938_v3 Cicer arietinum L. HOM05D004550 ORTHO05D005340 8.7e-72 274.2 228 65.8
COL.COLO4_27949 Corchorus olitorius HOM05D004550 ORTHO05D005340 8.7e-72 274.2 198 69.7
HanXRQChr12g0362721 Helianthus annuus HOM05D004550 ORTHO05D005340 1.9e-71 273.1 226 64.2
SGA_v2.0_scaffold16G07747 Striga asiatica HOM05D004550 ORTHO05D005340 2.5e-71 272.7 235 65.1
TAR371G1135 Trochodendron aralioides HOM05D004550 ORTHO05D005340 4.3e-71 271.9 202 69.8
Haze_11945 Corylus avellana HOM05D004550 ORTHO05D005340 9.6e-71 270.8 182 75.3
Oeu021093.1 Olea europaea HOM05D004550 ORTHO05D005340 1.6e-70 270.0 180 75.6
Cpa.g.sc1.80 Carica papaya HOM05D004550 ORTHO05D005340 2.1e-70 269.6 206 66.5
Medtr5g043020 Medicago truncatula HOM05D004550 ORTHO05D005340 2.1e-70 269.6 228 63.6
Sabra08G0069100 Salix brachista HOM05D004550 ORTHO05D005340 2.1e-70 269.6 277 54.9
Thhalv10019103m.g Eutrema salsugineum HOM05D004550 ORTHO05D005340 3.7e-70 268.9 228 63.6
MELO3C002974.2 Cucumis melo HOM05D004550 ORTHO05D005340 6.2e-70 268.1 257 56.8
ECA233G5814 Erigeron canadensis HOM05D004550 ORTHO05D005340 1.1e-69 267.3 219 64.8
unitig_21.g20859 Utricularia gibba HOM05D004550 ORTHO05D005340 1.1e-69 267.3 228 62.7
Lj2g0016497 Lotus japonicus HOM05D004550 ORTHO05D005340 1.8e-69 266.5 229 62.4
Sp5g24440 Schrenkiella parvula HOM05D004550 ORTHO05D005340 1.8e-69 266.5 229 63.8
arahy.Tifrunner.gnm1.ann1.M1L69X Arachis hypogaea HOM05D004550 ORTHO05D005340 2.4e-69 266.2 230 62.2
CARHR062270 Cardamine hirsuta HOM05D004550 ORTHO05D005340 6.9e-69 264.6 225 64.4
Sc04g0007790 Simmondsia chinensis HOM05D004550 ORTHO05D005340 1.5e-68 263.5 229 61.1
HanXRQChr08g0210541 Helianthus annuus HOM05D004550 ORTHO05D005340 5.8e-68 261.5 225 64.0
HanXRQChr08g0211031 Helianthus annuus HOM05D004550 ORTHO05D005340 5.8e-68 261.5 225 64.0
GSVIVG01011473001 Vitis vinifera HOM05D004550 ORTHO05D005340 7.6e-68 261.2 228 60.5
BolC2t08705H Brassica oleracea HOM05D004550 ORTHO05D005340 2.2e-67 259.6 229 63.8
Sabra10G0123800 Salix brachista HOM05D001252 ORTHO05D005340 6.5e-67 258.1 202 66.3
FvH4_6g47773 Fragaria vesca HOM05D004550 ORTHO05D005340 1.1e-66 257.3 228 59.6
EL10Ac6g13282 Beta vulgaris HOM05D004550 ORTHO05D005340 1.9e-66 256.5 258 54.7
Aa31LG4G11470 Aethionema arabicum HOM05D004550 ORTHO05D005340 2.5e-66 256.1 219 63.5
RcHm_v2.0_Chr2g0166971 Rosa chinensis HOM05D004550 ORTHO05D005340 2.5e-66 256.1 230 59.6
arahy.Tifrunner.gnm1.ann1.F9ESEJ Arachis hypogaea HOM05D004550 ORTHO05D005340 3.2e-66 255.8 211 63.0
C02p26330 Brassica napus HOM05D004550 ORTHO05D005340 3.2e-66 255.8 229 62.9
BcaB05g24446 Brassica carinata HOM05D004550 ORTHO05D005340 4.2e-66 255.4 228 61.0
TPR.G30749 Trifolium pratense HOM05D004550 ORTHO05D005340 7.1e-66 254.6 223 61.4
Psat2g127440 Pisum sativum HOM05D004550 ORTHO05D005340 9.3e-66 254.2 228 60.1
Ah.03g134600 Amaranthus hybridus HOM05D004550 ORTHO05D005340 3.5e-65 252.3 230 58.7
Hund05856 Selenicereus undatus HOM05D004550 ORTHO05D005340 7.9e-65 251.1 228 59.6
Lalb_Chr04g0255821 Lupinus albus HOM05D004550 ORTHO05D005340 1.0e-64 250.8 230 59.6
Ah.02g129300 Amaranthus hybridus HOM05D004550 ORTHO05D005340 2.3e-64 249.6 246 55.7
AT1G69390 Arabidopsis thaliana HOM05D004550 ORTHO05D005340 5.1e-64 248.4 230 60.9
BolC6t39378H Brassica oleracea HOM05D004550 ORTHO05D005340 6.7e-64 248.1 230 62.2
A07p35690 Brassica napus HOM05D004550 ORTHO05D005340 8.7e-64 247.7 230 62.6
BraA07t31157Z Brassica rapa HOM05D004550 ORTHO05D005340 8.7e-64 247.7 230 62.6
AL2G28500 Arabidopsis lyrata HOM05D004550 ORTHO05D005340 1.1e-63 247.3 230 60.9
TAR374G1091 Trochodendron aralioides HOM05D004550 ORTHO05D005340 1.1e-63 247.3 176 69.9
C06p40530 Brassica napus HOM05D004550 ORTHO05D005340 1.9e-63 246.5 231 61.9
FAN05G1708 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.9e-63 246.5 224 59.4
Manes.05G087100 Manihot esculenta HOM05D004550 ORTHO05D005340 5.7e-63 245.0 174 70.1
Prupe.3G261900 Prunus persica HOM05D004550 ORTHO05D005340 2.2e-62 243.0 218 61.0
Carub.0002s1599 Capsella rubella HOM05D004550 ORTHO05D005340 2.8e-62 242.7 228 59.6
THA.LOC104822027 Tarenaya hassleriana HOM05D004550 ORTHO05D005340 1.8e-61 240.0 230 58.3
BcaB03g15897 Brassica carinata HOM05D004550 ORTHO05D005340 2.4e-61 239.6 231 60.2
PSO478G0019 Papaver somniferum HOM05D004550 ORTHO05D005340 2.4e-61 239.6 228 59.2
A02p15870 Brassica napus HOM05D004550 ORTHO05D005340 1.0e-59 234.2 158 74.7
Gohir.D02G127801 Gossypium hirsutum HOM05D004550 ORTHO05D005340 2.2e-59 233.0 226 56.6
Gorai.005G143600 Gossypium raimondii HOM05D004550 ORTHO05D005340 2.2e-59 233.0 226 56.6
MD09G1057200 Malus domestica HOM05D004550 ORTHO05D005340 6.5e-59 231.5 213 58.2
FAN14G0263 Fragaria x ananassa HOM05D004550 ORTHO05D005340 3.2e-58 229.2 166 68.1
HanXRQChr17g0545411 Helianthus annuus HOM05D004550 ORTHO05D005340 2.1e-57 226.5 226 55.8
CDE04G2021 Ceratophyllum demersum HOM05D004550 ORTHO05D005340 3.6e-57 225.7 245 52.2
AUR62005866 Chenopodium quinoa HOM05D004550 ORTHO05D005340 3.6e-57 225.7 228 55.3
Actinidia33237 Actinidia chinensis HOM05D004550 ORTHO05D005340 1.8e-56 223.4 150 78.0
BcaC03g15080 Brassica carinata HOM05D004550 ORTHO05D005340 1.5e-55 220.3 179 65.4
HPP92_018458 Vanilla planifolia HOM05D004550 ORTHO05D005340 1.3e-54 217.2 228 53.1
AUR62032858 Chenopodium quinoa HOM05D004550 ORTHO05D005340 2.8e-54 216.1 228 53.9
Os12g0498400 Oryza sativa ssp. japonica HOM05D004550 ORTHO05D005340 5.9e-52 208.4 214 54.2
MSTRG.729 Avicennia marina HOM05D004550 ORTHO05D005340 7.7e-52 208.0 132 79.5
MELO3C012132.2 Cucumis melo HOM05D004550 ORTHO05D005340 1.0e-51 207.6 226 51.3
ATR0730G201 Amborella trichopoda HOM05D004550 ORTHO05D005340 2.2e-51 206.5 175 64.0
Potri.004G121000 Populus trichocarpa HOM05D004550 ORTHO05D005340 5.5e-50 201.8 188 58.5
Sed0010995 Sechium edule HOM05D004550 ORTHO05D005340 1.8e-48 196.8 228 50.9
CsaV3_5G033110 Cucumis sativus L. HOM05D004550 ORTHO05D005340 3.0e-48 196.1 228 50.4
Sabra04G0067200 Salix brachista HOM05D004550 ORTHO05D005340 3.9e-48 195.7 186 55.4
ClCG05G023910 Citrullus lanatus HOM05D004550 ORTHO05D005340 6.5e-43 178.3 199 50.8
Thecc.02G337600 Theobroma cacao HOM05D004550 ORTHO05D005340 2.3e-40 169.9 109 77.1
Zm00001eb409620 Zea mays HOM05D004550 ORTHO05D005340 3.0e-40 169.5 125 66.4
SEGI_17925 Sequoiadendron giganteum HOM05D004550 ORTHO05D005340 4.0e-40 169.1 164 56.7
MD16G1066100 Malus domestica HOM05D004550 ORTHO05D005340 3.1e-37 159.5 100 80.0
Mapoly0021s0017 Marchantia polymorpha HOM05D004550 ORTHO05D005340 5.7e-31 138.7 174 47.7
Pp3c23_20800 Physcomitrium patens HOM05D004550 ORTHO05D005340 9.8e-31 137.9 141 54.6
Pp3c20_5010 Physcomitrium patens HOM05D004550 ORTHO05D005340 8.3e-30 134.8 130 56.9
SMO141G0150 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 1.4e-29 134.0 99 62.6
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 3.1e-29 132.9 133 54.9
Pp3c9_20530 Physcomitrium patens HOM05D004550 ORTHO05D005340 1.3e-27 127.5 132 52.3
SMO356G0701 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 1.1e-26 124.4 135 54.1
arahy.Tifrunner.gnm1.ann1.QAIU0T Arachis hypogaea HOM05D004550 ORTHO05D005340 1.8e-24 117.1 79 72.2
BcaC08g45895 Brassica carinata HOM05D004550 ORTHO05D005340 1.6e-20 104.0 68 76.5
C06p37000 Brassica napus HOM05D004550 ORTHO05D005340 6.1e-17 92.0 95 57.9
BolC6t38810H Brassica oleracea HOM05D004550 ORTHO05D005340 6.1e-17 92.0 95 57.9
BcaB03g15467 Brassica carinata HOM05D004550 ORTHO05D005340 1.0e-16 91.3 64 71.9
Potri.017G088401 Populus trichocarpa HOM05D004550 ORTHO05D005340 4.0e-16 89.4 68 60.3
PRCOL_00005365 Prasinoderma coloniale HOM05D004550 ORTHO05D005340 8.3e-14 81.6 132 34.8
MCO05G609 Micromonas commoda HOM05D004550 ORTHO05D005340 1.7e-11 73.9 104 40.4
Cre17.g720350 Chlamydomonas reinhardtii HOM05D004550 ORTHO05D005340 3.0e-11 73.2 94 39.4


User provided reference genes

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