Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0076700 Rhododendron simsii HOM05D002318 ORTHO05D008744 2.7e-197 691.8 345 100.0
vmacro01330 Vaccinium macrocarpon HOM05D002318 ORTHO05D008744 5.4e-158 561.2 374 76.7
Actinidia19922 Actinidia chinensis HOM05D002318 ORTHO05D008744 4.1e-129 465.3 341 69.5
CSS0013540 Camellia sinensis var. sinensis HOM05D002318 ORTHO05D008744 4.6e-125 451.8 345 70.1
Thecc.02G336500 Theobroma cacao HOM05D002318 ORTHO05D008744 1.8e-121 439.9 342 66.1
TAR622G0636 Trochodendron aralioides HOM05D002318 ORTHO05D004713 9.1e-121 437.6 338 66.3
CiPaw.05G128000 Carya illinoinensis HOM05D002318 ORTHO05D008744 2.0e-120 436.4 346 66.8
Nitab4.5_0000334g0260 Nicotiana tabacum HOM05D002318 ORTHO05D008744 4.5e-120 435.3 343 66.5
Atru.chr11.1690 Acer truncatum HOM05D002318 ORTHO05D008744 1.3e-119 433.7 339 64.3
Sopen05g007450 Solanum pennellii HOM05D002318 ORTHO05D008744 6.5e-119 431.4 344 66.0
Haze_11934 Corylus avellana HOM05D002318 ORTHO05D008744 1.9e-118 429.9 342 64.9
Oeu021096.1 Olea europaea HOM05D002318 ORTHO05D008744 1.9e-118 429.9 346 65.9
Duzib268G0798 Durio zibethinus HOM05D002318 ORTHO05D008744 4.2e-118 428.7 343 64.1
Cfa008908 Carpinus fangiana HOM05D002318 ORTHO05D008744 7.2e-118 427.9 346 64.7
GSVIVG01012177001 Vitis vinifera HOM05D002318 ORTHO05D008744 1.2e-117 427.2 348 64.4
PGSC0003DMG401028329 Solanum tuberosum HOM05D002318 ORTHO05D008744 2.1e-117 426.4 344 65.1
PGSC0003DMG402022110 Solanum tuberosum HOM05D002318 ORTHO05D008744 2.1e-117 426.4 344 65.1
Lsat_1_v5_gn_8_48101 Lactuca sativa HOM05D002318 ORTHO05D004713 3.6e-117 425.6 338 63.3
COL.COLO4_27936 Corchorus olitorius HOM05D002318 ORTHO05D008744 1.0e-116 424.1 343 65.3
RcHm_v2.0_Chr4g0438871 Rosa chinensis HOM05D002318 ORTHO05D008744 6.7e-116 421.4 345 64.1
Ciclev10032054m.g Citrus clementina HOM05D002318 ORTHO05D008744 8.8e-116 421.0 340 64.1
QL03p070830 Quercus lobata HOM05D002318 ORTHO05D008744 1.5e-115 420.2 345 64.6
CAN.G1340.13 Capsicum annuum HOM05D002318 ORTHO05D008744 2.0e-115 419.9 344 64.2
Aqoxy3G03551 Aquilegia oxysepala HOM05D002318 ORTHO05D008744 7.4e-115 417.9 341 64.2
Cc11_g12380 Coffea canephora HOM05D002318 ORTHO05D008744 9.7e-115 417.5 343 63.6
Potri.010G161600 Populus trichocarpa HOM05D002318 ORTHO05D008744 2.2e-114 416.4 316 65.8
FAN07G2980 Fragaria x ananassa HOM05D002318 ORTHO05D004713 2.8e-114 416.0 345 63.5
Gorai.013G091200 Gossypium raimondii HOM05D002318 ORTHO05D008744 2.8e-114 416.0 343 62.1
HanXRQChr12g0362851 Helianthus annuus HOM05D002318 ORTHO05D008744 1.4e-113 413.7 341 63.6
Migut.L01223 Erythranthe guttata HOM05D002318 ORTHO05D008744 1.8e-113 413.3 346 61.3
MD16G1064900 Malus domestica HOM05D002318 ORTHO05D008744 4.1e-113 412.1 342 62.0
PGR119G0925 Punica granatum HOM05D002318 ORTHO05D008744 1.5e-112 410.2 343 59.8
Sc11g0002270 Simmondsia chinensis HOM05D002318 ORTHO05D008744 1.5e-112 410.2 344 61.6
Gohir.A13G079900 Gossypium hirsutum HOM05D002318 ORTHO05D008744 2.0e-112 409.8 343 61.5
Solyc05g012620.4 Solanum lycopersicum HOM05D002318 ORTHO05D008744 4.5e-112 408.7 281 73.3
FAN22G0051 Fragaria x ananassa HOM05D002318 ORTHO05D008744 7.7e-112 407.9 345 62.6
TWI75G0802 Tripterygium wilfordii HOM05D002318 ORTHO05D008744 1.0e-111 407.5 346 61.0
MBI16_g06774_MAGBIO Magnolia biondii HOM05D002318 ORTHO05D008744 1.7e-111 406.8 339 64.3
FAN17G2010 Fragaria x ananassa HOM05D002318 ORTHO05D008744 2.2e-111 406.4 356 61.5
Sabra10G0122900 Salix brachista HOM05D002318 ORTHO05D008744 3.8e-111 405.6 343 62.4
Cpa.g.sc1.87 Carica papaya HOM05D002318 ORTHO05D008744 1.1e-110 404.1 348 62.6
Peaxi162Scf00314g00023 Petunia axillaris HOM05D002318 ORTHO05D008744 1.1e-110 404.1 384 58.9
Phvul.002G069400 Phaseolus vulgaris HOM05D002318 ORTHO05D008744 1.4e-110 403.7 339 61.9
CANSAT54G0184 Cannabis sativa HOM05D002318 ORTHO05D008744 2.5e-110 402.9 320 65.3
Glyma.02G113500 Glycine max HOM05D002318 ORTHO05D008744 2.5e-110 402.9 339 62.5
Psat2g128360 Pisum sativum HOM05D002318 ORTHO05D008744 2.7e-109 399.4 337 62.9
TPR.G22412 Trifolium pratense HOM05D002318 ORTHO05D008744 2.7e-109 399.4 347 60.8
FAN12G0082 Fragaria x ananassa HOM05D002318 ORTHO05D008744 3.9e-108 395.6 345 61.7
THA.LOC104805183 Tarenaya hassleriana HOM05D002318 ORTHO05D008744 3.9e-108 395.6 348 61.5
VMungo1215G2584 Vigna mungo HOM05D002318 ORTHO05D008744 1.5e-107 393.7 355 60.8
Thhalv10004578m.g Eutrema salsugineum HOM05D002318 ORTHO05D008744 2.0e-107 393.3 342 61.1
CsaV3_6G032440 Cucumis sativus L. HOM05D002318 ORTHO05D008744 3.3e-107 392.5 343 58.3
DCAR_027449 Daucus carota HOM05D002318 ORTHO05D008744 4.4e-107 392.1 351 60.4
ATR0111G011 Amborella trichopoda HOM05D002318 ORTHO05D008744 2.2e-106 389.8 343 60.1
Lj2g0021077 Lotus japonicus HOM05D002318 ORTHO05D008744 2.2e-106 389.8 339 59.6
AL5G13100 Arabidopsis lyrata HOM05D002318 ORTHO05D008744 2.8e-106 389.4 342 61.7
AL5G13140 Arabidopsis lyrata HOM05D002318 ORTHO05D008744 2.8e-106 389.4 342 61.7
Lalb_Chr17g0340981 Lupinus albus HOM05D002318 ORTHO05D008744 4.8e-106 388.7 346 59.5
Carub.0005s0236 Capsella rubella HOM05D002318 ORTHO05D008744 8.2e-106 387.9 341 61.0
MELO3C011434.2 Cucumis melo HOM05D002318 ORTHO05D008744 8.2e-106 387.9 346 57.8
AT2G03390 Arabidopsis thaliana HOM05D002318 ORTHO05D008744 1.1e-105 387.5 342 60.8
Ca_04907_v3 Cicer arietinum L. HOM05D002318 ORTHO05D008744 1.1e-105 387.5 344 60.2
Hund05860 Selenicereus undatus HOM05D002318 ORTHO05D008744 3.1e-105 386.0 343 59.5
Eucgr.G02464 Eucalyptus grandis HOM05D002318 ORTHO05D008744 9.1e-105 384.4 282 67.0
Sp2g14310 Schrenkiella parvula HOM05D002318 ORTHO05D008744 9.1e-105 384.4 348 61.5
AUR62043182 Chenopodium quinoa HOM05D002318 ORTHO05D008744 1.6e-104 383.6 348 60.6
BcaC06g34000 Brassica carinata HOM05D002318 ORTHO05D008744 3.5e-104 382.5 346 60.4
SalBow2G2755 Salvia bowleyana HOM05D002318 ORTHO05D008744 1.0e-103 380.9 341 58.4
arahy.Tifrunner.gnm1.ann1.T0481B Arachis hypogaea HOM05D002318 ORTHO05D008744 2.9e-103 379.4 338 59.8
CARHR145730 Cardamine hirsuta HOM05D002318 ORTHO05D008744 8.5e-103 377.9 278 69.1
arahy.Tifrunner.gnm1.ann1.T5ZGHX Arachis hypogaea HOM05D002318 ORTHO05D008744 1.1e-102 377.5 296 65.2
Aa31LG2G7170 Aethionema arabicum HOM05D002318 ORTHO05D008744 4.2e-102 375.6 352 59.7
C07p33850 Brassica napus HOM05D002318 ORTHO05D008744 7.2e-102 374.8 348 60.3
BraA06t27203Z Brassica rapa HOM05D002318 ORTHO05D008744 9.4e-102 374.4 348 60.6
BcaC06g31184 Brassica carinata HOM05D002318 ORTHO05D008744 1.2e-101 374.0 279 68.5
BolC7t43899H Brassica oleracea HOM05D002318 ORTHO05D008744 2.1e-101 373.2 348 60.1
Gohir.D13G079700 Gossypium hirsutum HOM05D002318 ORTHO05D008744 2.7e-101 372.9 343 57.7
ClCG08G010240 Citrullus lanatus HOM05D002318 ORTHO05D008744 2.0e-99 366.7 392 52.8
Ah.13g073950 Amaranthus hybridus HOM05D002318 ORTHO05D008744 3.3e-99 365.9 362 54.4
Medtr5g043480 Medicago truncatula HOM05D002318 ORTHO05D008744 3.3e-99 365.9 347 57.9
Dinv34114 Davidia involucrata HOM05D002318 ORTHO05D008744 1.3e-98 364.0 280 68.6
Hma1.2p1_0354F.1_g133650 Hydrangea macrophylla HOM05D002318 ORTHO05D008744 1.7e-98 363.6 293 64.5
EL10As3g23350 Beta vulgaris HOM05D002318 ORTHO05D008744 2.0e-96 356.7 375 52.0
CDE04G0061 Ceratophyllum demersum HOM05D002318 ORTHO05D008744 7.7e-96 354.8 272 65.8
ECA233G4874 Erigeron canadensis HOM05D002318 ORTHO05D008744 1.0e-95 354.4 324 57.7
AUR62038089 Chenopodium quinoa HOM05D002318 ORTHO05D008744 1.9e-94 350.1 348 56.6
Prupe.1G282000 Prunus persica HOM05D002318 ORTHO05D008744 2.7e-93 346.3 342 55.0
Os08g0172200 Oryza sativa ssp. japonica HOM05D002318 ORTHO05D008744 1.2e-91 340.9 274 62.8
unitig_22.g6902 Utricularia gibba HOM05D002318 ORTHO05D008744 6.3e-90 335.1 293 61.1
Lj6C782T15 Lonicera japonica HOM05D002318 ORTHO05D008744 1.7e-87 327.0 346 52.0
Manes.01G030400 Manihot esculenta HOM05D002318 ORTHO05D008744 5.0e-87 325.5 293 59.0
Mapoly0001s0530 Marchantia polymorpha HOM05D002318 ORTHO05D008744 3.6e-85 319.3 271 58.7
SEGI_16280 Sequoiadendron giganteum HOM05D002318 ORTHO05D008744 3.0e-84 316.2 282 59.2
FvH4_4g30500 Fragaria vesca HOM05D002318 ORTHO05D008744 1.5e-83 313.9 280 60.0
Nn3g17371 Nelumbo nucifera HOM05D002318 ORTHO05D008744 2.6e-83 313.2 233 68.7
SGA_v2.0_scaffold16G07752 Striga asiatica HOM05D002318 ORTHO05D008744 5.0e-79 298.9 308 51.9
A06p43150 Brassica napus HOM05D002318 ORTHO05D008744 1.9e-78 297.0 302 58.6
Pp3c7_3960 Physcomitrium patens HOM05D002318 ORTHO05D008744 2.5e-78 296.6 253 57.3
Sed0004708 Sechium edule HOM05D002318 ORTHO05D008744 1.2e-77 294.3 280 56.1
CSS0007300 Camellia sinensis var. sinensis HOM05D002318 ORTHO05D008744 7.5e-75 285.0 227 69.2
AagrBONN_evm.TU.Sc2ySwM_117.1985 Anthoceros agrestis HOM05D002318 ORTHO05D008744 1.8e-73 280.4 262 53.4
Actinidia31948 Actinidia chinensis HOM05D002318 ORTHO05D008744 3.9e-71 272.7 286 54.2
Dinv16705 Davidia involucrata HOM05D002318 ORTHO05D004713 8.6e-71 271.6 230 67.8
PSO591G0040 Papaver somniferum HOM05D002318 ORTHO05D008744 1.4e-68 264.2 251 56.6
SMO115G0105 Selaginella moellendorffii HOM05D002318 ORTHO05D008744 4.7e-61 239.2 216 56.5
CBR_g27967 Chara braunii HOM05D002318 ORTHO05D008744 1.8e-60 237.3 264 47.7
FAN16G1553 Fragaria x ananassa HOM05D002318 ORTHO05D008744 6.4e-58 228.8 158 70.9
CSS0032009 Camellia sinensis var. sinensis HOM05D002318 ORTHO05D008744 3.3e-54 216.5 118 83.9
arahy.Tifrunner.gnm1.ann1.1U2S5X Arachis hypogaea HOM05D002318 ORTHO05D008744 1.1e-49 201.4 230 52.2
arahy.Tifrunner.gnm1.ann1.TF58FW Arachis hypogaea HOM05D002318 ORTHO05D008744 3.2e-49 199.9 230 51.7
Glyma.01G055000 Glycine max HOM05D002318 ORTHO05D008744 9.2e-49 198.4 188 61.2
Cre02.g113700 Chlamydomonas reinhardtii HOM05D002318 ORTHO05D008744 5.8e-43 179.1 278 40.3
PRCOL_00000845 Prasinoderma coloniale HOM05D002318 ORTHO05D008744 2.9e-42 176.8 281 39.1
Zm00001eb370310 Zea mays HOM05D002318 ORTHO05D008744 4.6e-40 169.5 222 45.9
Aa31sc734G30 Aethionema arabicum HOM05D002318 ORTHO05D008744 5.8e-35 152.5 179 54.2
CBR_g50304 Chara braunii HOM05D020303 ORTHO05D021299 5.3e-20 102.8 157 36.9
Glyma.01G054950 Glycine max HOM05D002318 ORTHO05D008744 3.2e-17 93.6 58 72.4
Os01g0764500 Oryza sativa ssp. japonica HOM05D002318 ORTHO05D008744 1.8e-15 87.8 64 60.9
Lsat_1_v5_gn_5_151580 Lactuca sativa HOM05D002318 ORTHO05D008744 3.6e-08 63.5 56 57.1
arahy.Tifrunner.gnm1.ann1.QV9UMR Arachis hypogaea HOM05D000001 ORTHO05D000003 4.6e-08 63.2 37 70.3
MD13G1066100 Malus domestica HOM05D002318 ORTHO05D008744 7.4e-06 55.8 76 40.8


User provided reference genes

Program Settings