Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0075300 Rhododendron simsii HOM05D016728 ORTHO05D338590 1.1e-129 466.8 266 100.0
Rhsim11G0131000 Rhododendron simsii HOM05D003935 ORTHO05D005096 8.7e-47 191.4 145 71.7
Rhsim02G0185900 Rhododendron simsii HOM05D016728 ORTHO05D340288 8.7e-39 164.9 168 73.8
Rhsim11G0033000 Rhododendron simsii HOM05D016728 ORTHO05D340219 8.8e-23 111.7 161 42.9
Rhsim09G0190400 Rhododendron simsii HOM05D003935 ORTHO05D005096 5.3e-20 102.4 102 62.7
vmacro09915 Vaccinium macrocarpon HOM05D003935 ORTHO05D005096 3.4e-19 99.8 102 60.8
Dinv06578 Davidia involucrata HOM05D003935 ORTHO05D005096 8.5e-18 95.1 102 58.8
Actinidia24986 Actinidia chinensis HOM05D003935 ORTHO05D005096 1.1e-17 94.7 102 58.8
Actinidia01047 Actinidia chinensis HOM05D003935 ORTHO05D005096 1.9e-17 94.0 102 56.9
CSS0046772 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 2.5e-17 93.6 102 58.8
Dinv16851 Davidia involucrata HOM05D003935 ORTHO05D005096 4.2e-17 92.8 102 57.8
Eucgr.K00175 Eucalyptus grandis HOM05D003935 ORTHO05D005096 4.2e-17 92.8 102 56.9
Hma1.2p1_0432F.1_g151940 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 4.2e-17 92.8 102 56.9
Actinidia13591 Actinidia chinensis HOM05D003935 ORTHO05D005096 5.5e-17 92.4 102 56.9
Nitab4.5_0001358g0020 Nicotiana tabacum HOM05D003935 ORTHO05D005096 1.6e-16 90.9 103 54.4
Haze_21276 Corylus avellana HOM05D003935 ORTHO05D005096 3.6e-16 89.7 93 55.9
Rhsim11G0033500 Rhododendron simsii HOM05D016728 ORTHO05D339964 3.6e-16 89.7 162 37.0
Cpa.g.sc16.168 Carica papaya HOM05D003935 ORTHO05D005096 4.7e-16 89.4 101 55.4
CSS0045715 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 6.1e-16 89.0 102 57.8
Nitab4.5_0001267g0110 Nicotiana tabacum HOM05D003935 ORTHO05D005096 6.1e-16 89.0 102 52.9
SGA_v2.0_scaffold44G16558 Striga asiatica HOM05D003935 ORTHO05D005096 8.0e-16 88.6 102 52.9
Hma1.2p1_1132F.1_g260170 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 1.0e-15 88.2 101 54.5
TWI14G1423 Tripterygium wilfordii HOM05D003935 ORTHO05D005096 1.4e-15 87.8 102 53.9
Nitab4.5_0000262g0090 Nicotiana tabacum HOM05D003935 ORTHO05D005096 1.8e-15 87.4 93 60.2
Sc10g0008570 Simmondsia chinensis HOM05D003935 ORTHO05D005096 1.8e-15 87.4 102 54.9
Potri.001G126500 Populus trichocarpa HOM05D003935 ORTHO05D005096 2.3e-15 87.0 103 52.4
PGR142G1672 Punica granatum HOM05D003935 ORTHO05D005096 2.3e-15 87.0 102 52.9
Sopen06g010820 Solanum pennellii HOM05D003935 ORTHO05D005096 2.3e-15 87.0 102 53.9
PGSC0003DMG400021594 Solanum tuberosum HOM05D003935 ORTHO05D005096 2.3e-15 87.0 102 53.9
TAR374G1483 Trochodendron aralioides HOM05D003935 ORTHO05D005096 2.3e-15 87.0 101 53.5
Peaxi162Scf00304g01342 Petunia axillaris HOM05D003935 ORTHO05D005096 3.0e-15 86.7 102 53.9
Rhsim06G0236800 Rhododendron simsii HOM05D003935 ORTHO05D005096 3.0e-15 86.7 96 56.2
Cfa012922 Carpinus fangiana HOM05D003935 ORTHO05D005096 3.9e-15 86.3 102 52.9
Migut.F00500 Erythranthe guttata HOM05D003935 ORTHO05D005096 3.9e-15 86.3 102 52.9
Nn6g33882 Nelumbo nucifera HOM05D003935 ORTHO05D005096 3.9e-15 86.3 101 54.5
Manes.06G132800 Manihot esculenta HOM05D003935 ORTHO05D005096 5.2e-15 85.9 102 52.0
Rhsim01G0073400 Rhododendron simsii HOM05D003935 ORTHO05D005096 5.2e-15 85.9 95 56.8
Solyc06g034160.3 Solanum lycopersicum HOM05D003935 ORTHO05D005096 5.2e-15 85.9 102 52.9
Nitab4.5_0000448g0060 Nicotiana tabacum HOM05D003935 ORTHO05D005096 8.8e-15 85.1 102 54.9
Aqoxy7G00829 Aquilegia oxysepala HOM05D003935 ORTHO05D005096 1.1e-14 84.7 102 51.0
CiPaw.07G237000 Carya illinoinensis HOM05D003935 ORTHO05D005096 1.1e-14 84.7 102 51.0
MSTRG.27208 Avicennia marina HOM05D003935 ORTHO05D005096 1.5e-14 84.3 102 52.9
CAN.G330.5 Capsicum annuum HOM05D003935 ORTHO05D005096 2.0e-14 84.0 102 52.9
Lalb_Chr01g0000281 Lupinus albus HOM05D003935 ORTHO05D005096 2.0e-14 84.0 102 52.0
Lalb_Chr19g0126281 Lupinus albus HOM05D003935 ORTHO05D005096 2.0e-14 84.0 102 52.0
Sabra01G0097600 Salix brachista HOM05D003935 ORTHO05D005096 2.6e-14 83.6 103 49.5
Lj1C977G12 Lonicera japonica HOM05D003935 ORTHO05D005096 3.3e-14 83.2 102 52.9
Gorai.004G165200 Gossypium raimondii HOM05D003935 ORTHO05D005096 5.7e-14 82.4 100 53.0
Psat7g207040 Pisum sativum HOM05D003935 ORTHO05D005096 5.7e-14 82.4 102 51.0
PSO063G2499 Papaver somniferum HOM05D003935 ORTHO05D005096 7.4e-14 82.0 103 50.5
PSO782G0781 Papaver somniferum HOM05D003935 ORTHO05D005096 7.4e-14 82.0 103 50.5
Sabra03G0073800 Salix brachista HOM05D003935 ORTHO05D005096 7.4e-14 82.0 103 52.4
Gohir.A08G137866 Gossypium hirsutum HOM05D003935 ORTHO05D005096 9.7e-14 81.6 100 53.0
Gohir.D08G159150 Gossypium hirsutum HOM05D003935 ORTHO05D005096 9.7e-14 81.6 100 53.0
Oeu031400.2 Olea europaea HOM05D003935 ORTHO05D005096 9.7e-14 81.6 101 51.5
GSVIVG01018224001 Vitis vinifera HOM05D003935 ORTHO05D005096 1.3e-13 81.3 101 51.5
Potri.003G107000 Populus trichocarpa HOM05D003935 ORTHO05D005096 1.7e-13 80.9 103 51.5
CANSAT21G2109 Cannabis sativa HOM05D003935 ORTHO05D005096 2.2e-13 80.5 102 49.0
CDE04G2838 Ceratophyllum demersum HOM05D003935 ORTHO05D005096 2.2e-13 80.5 93 53.8
Duzib138G0818 Durio zibethinus HOM05D003935 ORTHO05D005096 2.2e-13 80.5 101 52.5
AUR62015457 Chenopodium quinoa HOM05D003935 ORTHO05D005096 2.8e-13 80.1 99 50.5
Duzib133G0969 Durio zibethinus HOM05D003935 ORTHO05D005096 2.8e-13 80.1 101 50.5
MSTRG.8834 Avicennia marina HOM05D003935 ORTHO05D005096 3.7e-13 79.7 102 48.0
QL02p025668 Quercus lobata HOM05D003935 ORTHO05D005096 3.7e-13 79.7 102 51.0
THA.LOC104801570 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 3.7e-13 79.7 101 52.5
Medtr4g036265 Medicago truncatula HOM05D003935 ORTHO05D005096 4.8e-13 79.3 102 49.0
THA.LOC104819415 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 4.8e-13 79.3 102 51.0
Thecc.01G388100 Theobroma cacao HOM05D003935 ORTHO05D005096 4.8e-13 79.3 100 51.0
EL10Ac3g05885 Beta vulgaris HOM05D003935 ORTHO05D005096 6.3e-13 79.0 102 52.9
COL.COLO4_12445 Corchorus olitorius HOM05D003935 ORTHO05D005096 6.3e-13 79.0 100 51.0
TPR.G3680 Trifolium pratense HOM05D003935 ORTHO05D005096 6.3e-13 79.0 102 49.0
CiPaw.14G023500 Carya illinoinensis HOM05D003935 ORTHO05D005096 8.2e-13 78.6 100 51.0
Rhsim06G0202300 Rhododendron simsii HOM05D016728 ORTHO05D340161 8.2e-13 78.6 193 38.3
Rhsim10G0210100 Rhododendron simsii HOM05D016728 ORTHO05D340350 8.2e-13 78.6 193 37.8
RhsimUnG0040500 Rhododendron simsii HOM05D016728 ORTHO05D340355 8.2e-13 78.6 193 37.8
Glyma.09G231000 Glycine max HOM05D003935 ORTHO05D005096 1.1e-12 78.2 102 49.0
Hund04562 Selenicereus undatus HOM05D003935 ORTHO05D005096 1.4e-12 77.8 95 49.5
Cc02_g04470 Coffea canephora HOM05D003935 ORTHO05D005096 2.4e-12 77.0 106 49.1
arahy.Tifrunner.gnm1.ann1.YZL4IN Arachis hypogaea HOM05D003935 ORTHO05D005096 3.1e-12 76.6 102 50.0
AUR62002246 Chenopodium quinoa HOM05D003935 ORTHO05D005096 3.1e-12 76.6 101 50.5
DCAR_020181 Daucus carota HOM05D003935 ORTHO05D005096 3.1e-12 76.6 102 50.0
Atru.chr1.845 Acer truncatum HOM05D003935 ORTHO05D005096 4.1e-12 76.3 101 48.5
CsaV3_6G008640 Cucumis sativus L. HOM05D003935 ORTHO05D005096 4.1e-12 76.3 102 48.0
Sp2g24700 Schrenkiella parvula HOM05D003935 ORTHO05D005096 4.1e-12 76.3 101 48.5
Sed0016106 Sechium edule HOM05D003935 ORTHO05D005096 4.1e-12 76.3 101 49.5
Thhalv10004633m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 7.0e-12 75.5 102 48.0
QL04p034713 Quercus lobata HOM05D003935 ORTHO05D005096 7.0e-12 75.5 101 52.5
Sp6g35250 Schrenkiella parvula HOM05D003935 ORTHO05D005096 7.0e-12 75.5 101 48.5
AL7G47000 Arabidopsis lyrata HOM05D003935 ORTHO05D003430 1.6e-11 74.3 101 47.5
ECA232G4201 Erigeron canadensis HOM05D003935 ORTHO05D005096 2.0e-11 73.9 101 46.5
Gohir.A07G148000 Gossypium hirsutum HOM05D003935 ORTHO05D005096 2.0e-11 73.9 101 48.5
Gohir.D07G154200 Gossypium hirsutum HOM05D003935 ORTHO05D005096 2.0e-11 73.9 101 48.5
Gorai.001G176400 Gossypium raimondii HOM05D003935 ORTHO05D005096 2.0e-11 73.9 101 48.5
AT5G61500 Arabidopsis thaliana HOM05D003935 ORTHO05D005096 2.6e-11 73.6 101 46.5
Carub.0008s2219 Capsella rubella HOM05D003935 ORTHO05D005096 2.6e-11 73.6 101 46.5
CARHR275270 Cardamine hirsuta HOM05D003935 ORTHO05D005096 2.6e-11 73.6 101 46.5
HanXRQChr15g0485951 Helianthus annuus HOM05D003935 ORTHO05D005096 2.6e-11 73.6 102 46.1
AL8G38190 Arabidopsis lyrata HOM05D003935 ORTHO05D005096 3.5e-11 73.2 101 46.5
ClCG06G002480 Citrullus lanatus HOM05D003935 ORTHO05D005096 3.5e-11 73.2 101 47.5
Thhalv10014155m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 3.5e-11 73.2 101 46.5
Lsat_1_v5_gn_5_9340 Lactuca sativa HOM05D003935 ORTHO05D005096 3.5e-11 73.2 102 46.1
MELO3C022280.2 Cucumis melo HOM05D003935 ORTHO05D005096 4.5e-11 72.8 101 46.5
Phvul.011G006500 Phaseolus vulgaris HOM05D003935 ORTHO05D005096 4.5e-11 72.8 95 47.4
Haze_02753 Corylus avellana HOM05D003935 ORTHO05D005096 5.9e-11 72.4 93 49.5
Ah.07g207480 Amaranthus hybridus HOM05D003935 ORTHO05D005096 1.0e-10 71.6 102 50.0
SalBow1G3743 Salvia bowleyana HOM05D003935 ORTHO05D005096 1.0e-10 71.6 102 48.0
arahy.Tifrunner.gnm1.ann1.2B4GQV Arachis hypogaea HOM05D003935 ORTHO05D005096 1.7e-10 70.9 95 48.4
BcaC06g33155 Brassica carinata HOM05D003935 ORTHO05D005096 1.7e-10 70.9 102 46.1
VMungo1127G0071 Vigna mungo HOM05D003935 ORTHO05D005096 1.7e-10 70.9 95 45.3
Lj3g0013928 Lotus japonicus HOM05D003935 ORTHO05D005096 2.2e-10 70.5 101 45.5
Prupe.2G123000 Prunus persica HOM05D003935 ORTHO05D005096 2.9e-10 70.1 101 50.5
Glyma.12G005700 Glycine max HOM05D003935 ORTHO05D005096 3.8e-10 69.7 102 47.1
BcaC06g33158 Brassica carinata HOM05D003935 ORTHO05D005096 6.5e-10 68.9 102 45.1
Rhsim03G0165100 Rhododendron simsii HOM05D003935 ORTHO05D005096 1.1e-09 68.2 102 46.1
RcHm_v2.0_Chr1g0346321 Rosa chinensis HOM05D003935 ORTHO05D005096 1.1e-09 68.2 100 49.0
C07p45210 Brassica napus HOM05D003935 ORTHO05D005096 2.5e-09 67.0 103 45.6
BolC7t45044H Brassica oleracea HOM05D003935 ORTHO05D005096 2.5e-09 67.0 103 45.6
Aa31LG11G1910 Aethionema arabicum HOM05D003935 ORTHO05D005096 3.2e-09 66.6 101 46.5
FAN06G4162 Fragaria x ananassa HOM05D003935 ORTHO05D005096 5.5e-09 65.9 104 46.2
FvH4_7g09530 Fragaria vesca HOM05D003935 ORTHO05D005096 7.2e-09 65.5 104 46.2
FAN03G1633 Fragaria x ananassa HOM05D003935 ORTHO05D005096 7.2e-09 65.5 104 46.2
FAN06G5089 Fragaria x ananassa HOM05D003935 ORTHO05D005096 7.2e-09 65.5 104 46.2
FAN10G2569 Fragaria x ananassa HOM05D003935 ORTHO05D005096 7.2e-09 65.5 104 46.2
FAN10G4028 Fragaria x ananassa HOM05D003935 ORTHO05D005096 7.2e-09 65.5 104 46.2
FAN01G1603 Fragaria x ananassa HOM05D003935 ORTHO05D005096 9.4e-09 65.1 104 46.2
HanXRQChr16g0512861 Helianthus annuus HOM05D003935 ORTHO05D005096 1.2e-08 64.7 102 43.1
arahy.Tifrunner.gnm1.ann1.16SP4W Arachis hypogaea HOM05D003935 ORTHO05D005096 2.7e-08 63.5 102 45.1
Rhsim03G0098100 Rhododendron simsii HOM05D016728 ORTHO05D340097 6.1e-08 62.4 99 42.4
Ciclev10005442m.g Citrus clementina HOM05D003935 ORTHO05D005096 8.0e-08 62.0 108 43.5
unitig_37.g12492 Utricularia gibba HOM05D003935 ORTHO05D005096 1.8e-07 60.8 94 45.7
ATR0057G070 Amborella trichopoda HOM05D003935 ORTHO05D005096 4.0e-07 59.7 103 43.7
MD02G1218100 Malus domestica HOM05D003935 ORTHO05D005096 6.7e-07 58.9 101 46.5
Ca_12623_v3 Cicer arietinum L. HOM05D003935 ORTHO05D005096 1.5e-06 57.8 57 59.6
Actinidia10778 Actinidia chinensis HOM05D003935 ORTHO05D005096 2.0e-06 57.4 89 48.3
arahy.Tifrunner.gnm1.ann1.9TCX0P Arachis hypogaea HOM05D003935 ORTHO05D005096 2.6e-06 57.0 102 43.1
BolC2t06285H Brassica oleracea HOM05D003935 ORTHO05D005096 3.3e-06 56.6 96 44.8
SEGI_20183 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 3.3e-06 56.6 101 38.6
BcaB05g21604 Brassica carinata HOM05D003935 ORTHO05D005096 4.4e-06 56.2 97 44.3


User provided reference genes

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