Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0075200 Rhododendron simsii HOM05D003672 ORTHO05D004121 0.0e+00 1425.2 730 100.0
Rhsim12G0074700 Rhododendron simsii HOM05D003672 ORTHO05D004121 0.0e+00 1363.6 738 96.2
vmacro01315 Vaccinium macrocarpon HOM05D003672 ORTHO05D004121 4.3e-221 771.9 731 63.7
CSS0037619 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D004121 9.4e-152 541.6 767 48.8
Actinidia31938 Actinidia chinensis HOM05D003672 ORTHO05D004121 1.3e-140 504.6 754 46.4
Dinv34068 Davidia involucrata HOM05D003672 ORTHO05D004121 4.2e-136 489.6 782 45.5
TAR629G1848 Trochodendron aralioides HOM05D003672 ORTHO05D004121 1.5e-96 358.2 801 37.0
Nn3g17451 Nelumbo nucifera HOM05D003672 ORTHO05D004121 7.8e-90 335.9 802 37.2
TAR629G0952 Trochodendron aralioides HOM05D003672 ORTHO05D004121 2.6e-85 320.9 749 36.2
Nn4g23428 Nelumbo nucifera HOM05D003672 ORTHO05D004121 1.7e-84 318.2 804 34.6
GSVIVG01012221001 Vitis vinifera HOM05D003672 ORTHO05D004121 2.9e-84 317.4 750 37.3
Dinv22781 Davidia involucrata HOM05D003672 ORTHO05D004121 4.9e-84 316.6 798 35.0
Prupe.5G205200 Prunus persica HOM05D003672 ORTHO05D004121 4.9e-76 290.0 785 33.1
Atru.chr9.577 Acer truncatum HOM05D003672 ORTHO05D004121 1.4e-75 288.5 774 34.5
Hma1.2p1_0060F.1_g033090 Hydrangea macrophylla HOM05D003672 ORTHO05D004121 4.6e-74 283.5 784 34.2
Actinidia18990 Actinidia chinensis HOM05D003672 ORTHO05D004121 2.3e-73 281.2 774 34.1
Actinidia35037 Actinidia chinensis HOM05D003672 ORTHO05D004121 3.9e-73 280.4 767 33.9
Ciclev10019089m.g Citrus clementina HOM05D003672 ORTHO05D004121 1.8e-70 271.6 794 32.2
MD14G1212000 Malus domestica HOM05D003672 ORTHO05D004121 5.8e-69 266.5 692 34.0
Thecc.03G101900 Theobroma cacao HOM05D003672 ORTHO05D004121 5.8e-69 266.5 800 32.5
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 1.7e-68 265.0 765 32.0
FAN08G3423 Fragaria x ananassa HOM05D003672 ORTHO05D004121 2.7e-66 257.7 826 31.6
Rhsim12G0148200 Rhododendron simsii HOM05D003672 ORTHO05D004121 4.6e-66 256.9 759 32.3
Potri.015G057600 Populus trichocarpa HOM05D003672 ORTHO05D004121 6.1e-66 256.5 801 31.7
Duzib084G0362 Durio zibethinus HOM05D003672 ORTHO05D004121 1.5e-64 251.9 784 33.4
FvH4_5g13830 Fragaria vesca HOM05D003672 ORTHO05D004121 1.9e-64 251.5 819 31.9
FAN18G3332 Fragaria x ananassa HOM05D003672 ORTHO05D004121 2.5e-64 251.1 819 31.6
Nitab4.5_0001485g0140 Nicotiana tabacum HOM05D003672 ORTHO05D004121 2.5e-64 251.1 755 32.5
RcHm_v2.0_Chr7g0183101 Rosa chinensis HOM05D003672 ORTHO05D004121 5.7e-64 250.0 781 31.4
PSO478G1233 Papaver somniferum HOM05D003672 ORTHO05D004121 7.4e-64 249.6 712 32.7
Cfa019341 Carpinus fangiana HOM05D003672 ORTHO05D004121 1.3e-63 248.8 792 33.3
Manes.06G084700 Manihot esculenta HOM05D003672 ORTHO05D004121 2.2e-63 248.1 762 31.8
Nitab4.5_0009401g0050 Nicotiana tabacum HOM05D003672 ORTHO05D004121 2.2e-63 248.1 766 33.0
QL10p019524 Quercus lobata HOM05D003672 ORTHO05D004121 6.3e-63 246.5 800 32.0
GSVIVG01007866001 Vitis vinifera HOM05D003672 ORTHO05D004121 6.3e-63 246.5 784 30.9
Duzib205G1655 Durio zibethinus HOM05D003672 ORTHO05D004121 8.2e-63 246.1 793 30.4
FAN13G1740 Fragaria x ananassa HOM05D003672 ORTHO05D004121 5.3e-62 243.4 825 31.0
PSO017G3206 Papaver somniferum HOM05D003672 ORTHO05D004121 9.0e-62 242.7 713 32.0
COL.COLO4_06856 Corchorus olitorius HOM05D003672 ORTHO05D004121 2.6e-61 241.1 798 30.8
Haze_07732 Corylus avellana HOM05D003672 ORTHO05D004121 2.6e-61 241.1 875 31.1
QL03p074101 Quercus lobata HOM05D003672 ORTHO05D004121 2.9e-60 237.7 614 34.0
CANSAT80G1081 Cannabis sativa HOM05D003672 ORTHO05D004121 3.8e-60 237.3 807 30.7
arahy.Tifrunner.gnm1.ann1.N0JE3Z Arachis hypogaea HOM05D003672 ORTHO05D004121 8.5e-60 236.1 768 32.3
Sopen03g034170 Solanum pennellii HOM05D003672 ORTHO05D004121 8.5e-60 236.1 764 32.3
arahy.Tifrunner.gnm1.ann1.SKH1UB Arachis hypogaea HOM05D003672 ORTHO05D004121 1.4e-59 235.3 767 31.8
Lj5C102T25 Lonicera japonica HOM05D003672 ORTHO05D004121 1.9e-59 235.0 759 32.4
Lj1g0027425 Lotus japonicus HOM05D003672 ORTHO05D004121 1.9e-59 235.0 781 32.5
Peaxi162Scf00201g00329 Petunia axillaris HOM05D003672 ORTHO05D004121 9.4e-59 232.6 762 31.2
Cc00_g14840 Coffea canephora HOM05D003672 ORTHO05D004121 1.6e-58 231.9 776 29.6
MELO3C017225.2 Cucumis melo HOM05D003672 ORTHO05D004121 1.6e-58 231.9 793 29.5
Aqoxy1G00151 Aquilegia oxysepala HOM05D003672 ORTHO05D004121 3.9e-57 227.3 781 30.5
Oeu044870.1 Olea europaea HOM05D003672 ORTHO05D004121 3.9e-57 227.3 754 30.1
Cpa.g.sc94.57 Carica papaya HOM05D003672 ORTHO05D004121 6.7e-57 226.5 788 29.9
Sabra15G0083600 Salix brachista HOM05D003672 ORTHO05D004121 8.8e-57 226.1 794 29.6
Manes.14G085800 Manihot esculenta HOM05D003672 ORTHO05D004121 1.1e-56 225.7 774 29.7
Solyc03g115100.4 Solanum lycopersicum HOM05D003672 ORTHO05D004121 1.1e-56 225.7 764 31.9
DCAR_023172 Daucus carota HOM05D003672 ORTHO05D004121 1.5e-56 225.3 776 29.8
Sed0002350 Sechium edule HOM05D003672 ORTHO05D004121 2.0e-56 224.9 767 29.5
TWI60G1197 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 2.5e-56 224.6 773 31.0
Ca_14345_v3 Cicer arietinum L. HOM05D003672 ORTHO05D004121 7.4e-56 223.0 806 30.1
vmacro16495 Vaccinium macrocarpon HOM05D003672 ORTHO05D004121 3.7e-55 220.7 766 30.7
MSTRG.22965 Avicennia marina HOM05D003672 ORTHO05D004121 6.9e-54 216.5 781 31.5
Eucgr.B00592 Eucalyptus grandis HOM05D003672 ORTHO05D004121 2.6e-53 214.5 785 30.7
AUR62008531 Chenopodium quinoa HOM05D003672 ORTHO05D004121 4.5e-53 213.8 752 30.2
PGR083G2392 Punica granatum HOM05D003672 ORTHO05D004121 4.5e-53 213.8 765 29.9
Haze_11907 Corylus avellana HOM05D003672 ORTHO05D004121 7.7e-53 213.0 584 32.0
Gohir.D07G073000 Gossypium hirsutum HOM05D003672 ORTHO05D004121 1.0e-52 212.6 771 30.2
Glyma.06G203700 Glycine max HOM05D003672 ORTHO05D004121 3.8e-52 210.7 766 30.2
PGSC0003DMG400024637 Solanum tuberosum HOM05D003672 ORTHO05D004121 3.8e-52 210.7 764 31.2
Glyma.04G162600 Glycine max HOM05D003672 ORTHO05D004121 5.0e-52 210.3 762 30.3
Gohir.A07G068500 Gossypium hirsutum HOM05D003672 ORTHO05D004121 5.0e-52 210.3 772 30.2
SalBow7G3172 Salvia bowleyana HOM05D003672 ORTHO05D004121 6.5e-52 209.9 778 30.5
Gorai.001G077200 Gossypium raimondii HOM05D003672 ORTHO05D004121 1.1e-51 209.1 771 30.2
AUR62021559 Chenopodium quinoa HOM05D003672 ORTHO05D004121 1.4e-51 208.8 749 30.4
Oeu061164.2 Olea europaea HOM05D003672 ORTHO05D004121 3.2e-51 207.6 782 29.4
ClCG06G015630 Citrullus lanatus HOM05D003672 ORTHO05D004121 5.5e-51 206.8 778 28.0
Migut.D01656 Erythranthe guttata HOM05D003672 ORTHO05D004121 2.1e-50 204.9 755 29.0
Gorai.008G199200 Gossypium raimondii HOM05D003672 ORTHO05D004121 2.7e-50 204.5 771 30.7
Lalb_Chr13g0302861 Lupinus albus HOM05D003672 ORTHO05D004121 3.6e-50 204.1 780 30.0
Dinv17414 Davidia involucrata HOM05D003672 ORTHO05D004121 1.4e-49 202.2 777 30.1
Medtr3g025870 Medicago truncatula HOM05D003672 ORTHO05D004121 2.3e-49 201.4 780 30.0
Phvul.010G007200 Phaseolus vulgaris HOM05D003672 ORTHO05D004121 3.9e-49 200.7 755 29.5
THA.LOC104819401 Tarenaya hassleriana HOM05D003672 ORTHO05D004121 8.8e-49 199.5 774 27.9
EL10Ac5g11131 Beta vulgaris HOM05D003672 ORTHO05D004121 2.0e-48 198.4 741 30.0
Gohir.A12G182700 Gossypium hirsutum HOM05D003672 ORTHO05D004121 2.6e-48 198.0 778 29.8
CiPaw.12G008500 Carya illinoinensis HOM05D003672 ORTHO05D004121 3.3e-48 197.6 805 30.6
VMungo0331G1159 Vigna mungo HOM05D003672 ORTHO05D004121 1.3e-47 195.7 756 30.0
Gohir.D12G185800 Gossypium hirsutum HOM05D003672 ORTHO05D004121 2.8e-47 194.5 667 31.2
MBI16_g38067_MAGBIO Magnolia biondii HOM05D003672 ORTHO05D004121 8.2e-47 193.0 800 28.5
CsaV3_1G002930 Cucumis sativus L. HOM05D003672 ORTHO05D004121 1.1e-46 192.6 773 28.1
Psat2g037720 Pisum sativum HOM05D003672 ORTHO05D004121 4.1e-46 190.7 756 28.0
Hund09914 Selenicereus undatus HOM05D003672 ORTHO05D004121 5.3e-46 190.3 777 29.3
CiPaw.05G125000 Carya illinoinensis HOM05D003672 ORTHO05D004121 9.1e-46 189.5 663 28.7
QL03p074186 Quercus lobata HOM05D003672 ORTHO05D004121 9.1e-46 189.5 631 30.0
Hund02585 Selenicereus undatus HOM05D003672 ORTHO05D004121 1.5e-45 188.7 768 29.2
TPR.G12189 Trifolium pratense HOM05D003672 ORTHO05D004121 4.5e-45 187.2 778 29.0
Ah.02g114040 Amaranthus hybridus HOM05D003672 ORTHO05D004121 7.7e-45 186.4 773 29.2
AL8G37700 Arabidopsis lyrata HOM05D003672 ORTHO05D004121 7.7e-45 186.4 758 27.8
TWI15G0151 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 7.7e-45 186.4 784 29.0
TWI81G0716 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 1.7e-44 185.3 787 29.5
Potri.008G096100 Populus trichocarpa HOM05D003672 ORTHO05D004121 3.8e-44 184.1 648 32.1
ECA232G2426 Erigeron canadensis HOM05D003672 ORTHO05D004121 6.5e-44 183.3 741 30.1
Lalb_Chr07g0178301 Lupinus albus HOM05D003672 ORTHO05D004121 1.1e-43 182.6 685 29.1
Cc11_g11950 Coffea canephora HOM05D003672 ORTHO05D004121 1.5e-43 182.2 648 31.9
Ah.11g047770 Amaranthus hybridus HOM05D003672 ORTHO05D004121 3.2e-43 181.0 758 28.2
AT5G61040 Arabidopsis thaliana HOM05D003672 ORTHO05D004121 9.4e-43 179.5 763 28.2
BcaC06g33181 Brassica carinata HOM05D003672 ORTHO05D004121 2.7e-42 177.9 747 27.0
Sabra08G0072400 Salix brachista HOM05D003672 ORTHO05D004121 8.0e-42 176.4 617 31.9
CiPaw.11G053900 Carya illinoinensis HOM05D003672 ORTHO05D004121 1.5e-40 172.2 602 31.2
ATR0177G058 Amborella trichopoda HOM05D003672 ORTHO05D004121 7.4e-40 169.9 629 29.9
arahy.Tifrunner.gnm1.ann1.R6LVKU Arachis hypogaea HOM05D003672 ORTHO05D004121 7.4e-40 169.9 792 27.9
CAN.G1228.26 Capsicum annuum HOM05D003672 ORTHO05D004121 1.7e-39 168.7 430 37.0
BraA03t13796Z Brassica rapa HOM05D003672 ORTHO05D004121 2.2e-39 168.3 763 27.0
arahy.Tifrunner.gnm1.ann1.03S8MC Arachis hypogaea HOM05D003672 ORTHO05D004121 3.7e-39 167.5 797 27.9
BolC7t45002H Brassica oleracea HOM05D003672 ORTHO05D004121 8.2e-39 166.4 745 25.9
Sc12g0007260 Simmondsia chinensis HOM05D003672 ORTHO05D004121 7.0e-38 163.3 449 35.4
Carub.0008s2173 Capsella rubella HOM05D003672 ORTHO05D004121 1.2e-37 162.5 755 27.3
PGR102G2240 Punica granatum HOM05D003672 ORTHO05D004121 1.6e-37 162.2 624 30.6
Eucgr.B03149 Eucalyptus grandis HOM05D003672 ORTHO05D004121 3.5e-37 161.0 696 28.9
Thhalv10003875m.g Eutrema salsugineum HOM05D003672 ORTHO05D004121 2.9e-36 157.9 765 26.7
CARHR274750 Cardamine hirsuta HOM05D003672 ORTHO05D004121 1.5e-35 155.6 659 26.6
Oeu004585.2 Olea europaea HOM05D003672 ORTHO05D004121 1.9e-35 155.2 616 28.9
SGA_v2.0_scaffold25G10960 Striga asiatica HOM05D003672 ORTHO05D004121 1.9e-35 155.2 743 28.3
C07p44780 Brassica napus HOM05D003672 ORTHO05D004121 4.2e-35 154.1 747 26.1
CAN.G3169.1 Capsicum annuum HOM05D002946 ORTHO05D003299 2.7e-34 151.4 463 31.5
SalBow2G2767 Salvia bowleyana HOM05D003672 ORTHO05D004121 1.8e-33 148.7 746 26.0
Lsat_1_v5_gn_4_111040 Lactuca sativa HOM05D003672 ORTHO05D004121 2.3e-33 148.3 656 27.7
Carub.0006s0690 Capsella rubella HOM05D003672 ORTHO05D004121 8.8e-33 146.4 766 25.3
MBI16_g36263_MAGBIO Magnolia biondii HOM05D003672 ORTHO05D004121 1.2e-32 146.0 468 31.0
Zm00001eb029540 Zea mays HOM05D003672 ORTHO05D004121 7.5e-32 143.3 691 28.2
Glyma.05G021000 Glycine max HOM05D003672 ORTHO05D004121 1.7e-31 142.1 763 27.1
A03p46740 Brassica napus HOM05D003672 ORTHO05D004121 2.2e-31 141.7 763 26.1
Sp2g24340 Schrenkiella parvula HOM05D003672 ORTHO05D004121 3.7e-31 141.0 755 24.1
Lj5A435T21 Lonicera japonica HOM05D003672 ORTHO05D004121 6.3e-31 140.2 762 27.2
Manes.01G028000 Manihot esculenta HOM05D003672 ORTHO05D004121 1.1e-30 139.4 603 28.4
Os12g0576300 Oryza sativa ssp. japonica HOM05D003672 ORTHO05D004121 1.1e-30 139.4 610 26.7
Peaxi162Scf00175g00022 Petunia axillaris HOM05D003672 ORTHO05D004121 2.4e-30 138.3 352 33.8
VMungo1215G2632 Vigna mungo HOM05D003672 ORTHO05D004121 2.4e-30 138.3 435 34.3
HanXRQChr09g0270231 Helianthus annuus HOM05D003672 ORTHO05D004121 1.6e-29 135.6 615 28.8
Zm00001eb136280 Zea mays HOM05D003672 ORTHO05D004121 2.0e-29 135.2 467 29.6
CAN.G1228.24 Capsicum annuum HOM05D003672 ORTHO05D004121 2.7e-29 134.8 439 32.3
Atru.chr11.1624 Acer truncatum HOM05D003672 ORTHO05D004121 1.1e-27 129.4 343 34.1
Nitab4.5_0000231g0260 Nicotiana tabacum HOM05D003672 ORTHO05D004121 1.5e-27 129.0 383 32.4
HPP92_007830 Vanilla planifolia HOM05D003672 ORTHO05D004121 9.4e-27 126.3 623 25.7
AL6G18360 Arabidopsis lyrata HOM05D003672 ORTHO05D004121 1.2e-26 125.9 765 25.6
Phvul.003G184800 Phaseolus vulgaris HOM05D003672 ORTHO05D004121 1.6e-26 125.6 572 27.6
Lj4g0018287 Lotus japonicus HOM05D003672 ORTHO05D004121 3.6e-26 124.4 456 30.0
PGSC0003DMG400028369 Solanum tuberosum HOM05D003672 ORTHO05D004121 3.6e-26 124.4 331 32.9
Solyc05g012230.4 Solanum lycopersicum HOM05D003672 ORTHO05D004121 4.7e-26 124.0 327 34.3
Actinidia19914 Actinidia chinensis HOM05D000020 ORTHO05D000156 8.0e-26 123.2 120 60.8
Aa31LG3G18520 Aethionema arabicum HOM05D003672 ORTHO05D004121 2.3e-25 121.7 757 24.2
HanXRQChr16g0502451 Helianthus annuus HOM05D003672 ORTHO05D004121 8.8e-25 119.8 356 30.6
Nitab4.5_0009585g0010 Nicotiana tabacum HOM05D003672 ORTHO05D004121 9.8e-24 116.3 345 33.3
C09p68900 Brassica napus HOM05D003672 ORTHO05D004121 2.2e-23 115.2 637 25.0
BraA10t44910Z Brassica rapa HOM05D003672 ORTHO05D004121 2.8e-23 114.8 516 27.5
Thhalv10013089m.g Eutrema salsugineum HOM05D003672 ORTHO05D004121 3.7e-23 114.4 477 27.0
BolC9t59636H Brassica oleracea HOM05D003672 ORTHO05D004121 8.3e-23 113.2 644 25.0
Aa31LG11G2260 Aethionema arabicum HOM05D003672 ORTHO05D004121 4.1e-22 110.9 730 25.2
ClCG04G011810 Citrullus lanatus HOM05D003672 ORTHO05D004121 5.4e-22 110.5 607 24.9
HPP92_000460 Vanilla planifolia HOM05D003672 ORTHO05D004121 7.0e-22 110.2 484 29.1
BcaB08g37300 Brassica carinata HOM05D003672 ORTHO05D004121 9.1e-22 109.8 238 36.1
CANSAT39G0004 Cannabis sativa HOM05D003672 ORTHO05D004121 1.6e-21 109.0 215 37.7
MELO3C002028.2 Cucumis melo HOM05D003672 ORTHO05D004121 4.5e-21 107.5 605 25.3
Sopen05g007060 Solanum pennellii HOM05D003672 ORTHO05D004121 1.0e-20 106.3 323 31.6
AT5G08010 Arabidopsis thaliana HOM05D003672 ORTHO05D004121 1.3e-20 105.9 599 25.7
Lsat_1_v5_gn_8_46340 Lactuca sativa HOM05D003672 ORTHO05D004121 1.7e-20 105.5 600 25.8
CsaV3_1G005970 Cucumis sativus L. HOM05D003672 ORTHO05D004121 2.3e-20 105.1 610 25.9
SEGI_35614 Sequoiadendron giganteum HOM05D003672 ORTHO05D004121 2.1e-18 98.6 645 25.7
BcaB08g37298 Brassica carinata HOM05D003672 ORTHO05D004121 3.6e-18 97.8 458 26.2
A10p28610 Brassica napus HOM05D003672 ORTHO05D004121 3.6e-18 97.8 520 25.8
CDE04G0191 Ceratophyllum demersum HOM05D003672 ORTHO05D004121 4.0e-17 94.4 489 25.6
ECA233G1662 Erigeron canadensis HOM05D000677 ORTHO05D000727 1.5e-16 92.4 432 26.6
CDE07G1307 Ceratophyllum demersum HOM05D003672 ORTHO05D004121 3.4e-16 91.3 483 25.3
CARHR205170 Cardamine hirsuta HOM05D003672 ORTHO05D004121 1.3e-15 89.4 604 23.3
Ciclev10033781m.g Citrus clementina HOM05D003672 ORTHO05D004121 2.8e-15 88.2 316 28.2
SGA_v2.0_scaffold36G14460 Striga asiatica HOM05D003672 ORTHO05D004121 8.3e-15 86.7 159 43.4
SEGI_10408 Sequoiadendron giganteum HOM05D003672 ORTHO05D004121 1.4e-14 85.9 607 24.2
VMungo1215G3071 Vigna mungo HOM05D003672 ORTHO05D004121 3.2e-14 84.7 230 32.2
Sed0025785 Sechium edule HOM05D003672 ORTHO05D004121 2.0e-13 82.0 628 21.5
Sp6g34930 Schrenkiella parvula HOM05D003672 ORTHO05D004121 1.3e-12 79.3 478 23.8
Migut.L01189 Erythranthe guttata HOM05D003672 ORTHO05D004121 2.3e-12 78.6 381 28.6
unitig_749.g13432 Utricularia gibba HOM05D003672 ORTHO05D004121 7.3e-11 73.6 455 24.8
HanXRQChr12g0363081 Helianthus annuus HOM05D003672 ORTHO05D004121 1.0e-09 69.7 339 26.3
MSTRG.7745 Avicennia marina HOM05D003672 ORTHO05D004121 8.3e-07 60.1 92 42.4


User provided reference genes

Program Settings