Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0074900 Rhododendron simsii HOM05D001391 ORTHO05D005432 5.3e-204 714.1 364 100.0
vmacro01316 Vaccinium macrocarpon HOM05D001391 ORTHO05D005432 5.6e-121 438.3 326 74.5
Actinidia16169 Actinidia chinensis HOM05D001391 ORTHO05D005432 4.2e-116 422.2 319 71.5
CSS0007431 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 6.0e-115 418.3 324 69.4
CSS0028231 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 6.0e-115 418.3 324 69.4
Oeu048144.1 Olea europaea HOM05D001391 ORTHO05D005432 1.8e-111 406.8 308 71.1
Lj3C1030G23 Lonicera japonica HOM05D001391 ORTHO05D005432 7.6e-110 401.4 305 70.5
CiPaw.06G092300 Carya illinoinensis HOM05D001391 ORTHO05D005432 2.9e-109 399.4 308 69.2
SGA_v2.0_scaffold16G07780 Striga asiatica HOM05D001391 ORTHO05D005432 3.8e-109 399.1 322 67.7
GSVIVG01012214001 Vitis vinifera HOM05D001391 ORTHO05D005432 8.4e-109 397.9 306 69.0
DCAR_007192 Daucus carota HOM05D001391 ORTHO05D005432 1.9e-108 396.7 314 68.2
QL03p071791 Quercus lobata HOM05D001391 ORTHO05D005432 2.4e-108 396.4 311 68.5
QL03p072323 Quercus lobata HOM05D001391 ORTHO05D005432 2.4e-108 396.4 311 68.5
Dinv34072 Davidia involucrata HOM05D001391 ORTHO05D005432 3.2e-108 396.0 299 71.2
Sopen05g007170 Solanum pennellii HOM05D001391 ORTHO05D005432 5.4e-108 395.2 296 71.3
QL03p071836 Quercus lobata HOM05D001391 ORTHO05D005432 9.3e-108 394.4 311 68.2
QL03p072246 Quercus lobata HOM05D001391 ORTHO05D005432 1.6e-107 393.7 307 69.1
QL06p022506 Quercus lobata HOM05D001391 ORTHO05D005432 1.6e-107 393.7 307 69.1
QL03p071994 Quercus lobata HOM05D001391 ORTHO05D005432 4.6e-107 392.1 311 68.5
QL03p071709 Quercus lobata HOM05D001391 ORTHO05D005432 3.0e-106 389.4 331 63.7
unitig_22.g6493 Utricularia gibba HOM05D001391 ORTHO05D005432 6.6e-106 388.3 319 65.5
THA.LOC104824058 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 3.3e-105 386.0 314 64.6
HanXRQChr15g0477081 Helianthus annuus HOM05D001391 ORTHO05D005432 7.3e-105 384.8 305 67.9
MD13G1063100 Malus domestica HOM05D001391 ORTHO05D005432 7.3e-105 384.8 302 68.2
Prupe.1G286500 Prunus persica HOM05D001391 ORTHO05D005432 9.6e-105 384.4 327 64.5
Sabra10G0120500 Salix brachista HOM05D001391 ORTHO05D005432 2.8e-104 382.9 309 67.3
QL03p072348 Quercus lobata HOM05D001391 ORTHO05D005432 3.6e-104 382.5 298 68.5
Lj4g0006249 Lotus japonicus HOM05D001391 ORTHO05D005432 6.2e-104 381.7 307 66.1
MD16G1061600 Malus domestica HOM05D001391 ORTHO05D005432 6.2e-104 381.7 302 67.5
Lalb_Chr05g0219941 Lupinus albus HOM05D001391 ORTHO05D005432 8.1e-104 381.3 321 63.9
Eucgr.B03154 Eucalyptus grandis HOM05D001391 ORTHO05D005432 1.1e-103 380.9 298 67.8
PGR102G1705 Punica granatum HOM05D001391 ORTHO05D005432 1.1e-103 380.9 299 67.6
ATR0064G010 Amborella trichopoda HOM05D001391 ORTHO05D005432 1.4e-103 380.6 307 64.2
COL.COLO4_27891 Corchorus olitorius HOM05D001391 ORTHO05D005432 1.4e-103 380.6 306 65.4
Ciclev10031905m.g Citrus clementina HOM05D001391 ORTHO05D005432 1.8e-103 380.2 300 66.3
MELO3C011425.2 Cucumis melo HOM05D001391 ORTHO05D005432 2.4e-103 379.8 319 63.0
Manes.01G028100 Manihot esculenta HOM05D001391 ORTHO05D005432 5.3e-103 378.6 295 68.8
Cc11_g12040 Coffea canephora HOM05D001391 ORTHO05D005432 6.9e-103 378.3 300 67.7
Atru.chr11.1633 Acer truncatum HOM05D001391 ORTHO05D005432 9.0e-103 377.9 308 65.3
CAN.G616.39 Capsicum annuum HOM05D001391 ORTHO05D005432 9.0e-103 377.9 296 69.6
CDE05G0079 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 9.0e-103 377.9 304 64.8
Duzib248G0196 Durio zibethinus HOM05D001391 ORTHO05D005432 9.0e-103 377.9 317 64.7
HanXRQChr12g0375271 Helianthus annuus HOM05D001391 ORTHO05D005432 1.2e-102 377.5 305 66.9
Thecc.02G331500 Theobroma cacao HOM05D001391 ORTHO05D005432 1.2e-102 377.5 306 66.3
TWI31G1273 Tripterygium wilfordii HOM05D001391 ORTHO05D005432 1.2e-102 377.5 305 66.2
ECA246G4329 Erigeron canadensis HOM05D001391 ORTHO05D005432 2.0e-102 376.7 305 65.9
Sed0003297 Sechium edule HOM05D001391 ORTHO05D005432 2.6e-102 376.3 319 62.7
Potri.010G158700 Populus trichocarpa HOM05D001391 ORTHO05D005432 3.4e-102 375.9 309 66.0
TAR629G1471 Trochodendron aralioides HOM05D001391 ORTHO05D005432 3.4e-102 375.9 305 64.9
TAR629G2660 Trochodendron aralioides HOM05D001391 ORTHO05D005432 3.4e-102 375.9 305 64.9
FAN07G1596 Fragaria x ananassa HOM05D001391 ORTHO05D005432 4.5e-102 375.6 318 64.2
RcHm_v2.0_Chr4g0438441 Rosa chinensis HOM05D001391 ORTHO05D005432 4.5e-102 375.6 300 67.3
THA.LOC104805193 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 4.5e-102 375.6 304 64.5
arahy.Tifrunner.gnm1.ann1.52K398 Arachis hypogaea HOM05D001391 ORTHO05D005432 5.8e-102 375.2 299 66.6
BcaB07g30667 Brassica carinata HOM05D001391 ORTHO05D005432 7.6e-102 374.8 328 61.3
A09p24460 Brassica napus HOM05D001391 ORTHO05D005432 7.6e-102 374.8 328 61.0
FvH4_4g30104 Fragaria vesca HOM05D001391 ORTHO05D005432 7.6e-102 374.8 317 64.4
Glyma.20G025600 Glycine max HOM05D001391 ORTHO05D005432 7.6e-102 374.8 298 66.8
BraA09t38039Z Brassica rapa HOM05D001391 ORTHO05D005432 9.9e-102 374.4 328 61.0
FAN17G2247 Fragaria x ananassa HOM05D001391 ORTHO05D002605 9.9e-102 374.4 322 63.7
BcaC04g21485 Brassica carinata HOM05D001391 ORTHO05D005432 2.2e-101 373.2 328 60.7
C09p31260 Brassica napus HOM05D001391 ORTHO05D005432 2.2e-101 373.2 328 60.7
BolC9t55982H Brassica oleracea HOM05D001391 ORTHO05D005432 2.2e-101 373.2 328 60.7
arahy.Tifrunner.gnm1.ann1.G55KBL Arachis hypogaea HOM05D001391 ORTHO05D005432 4.9e-101 372.1 299 66.2
Ca_18800_v3 Cicer arietinum L. HOM05D001391 ORTHO05D005432 4.9e-101 372.1 296 67.2
Solyc05g012340.4 Solanum lycopersicum HOM05D001391 ORTHO05D005432 4.9e-101 372.1 230 83.0
Zm00001eb393170 Zea mays HOM05D001391 ORTHO05D005432 8.4e-101 371.3 314 63.4
Medtr4g083100 Medicago truncatula HOM05D001391 ORTHO05D005432 1.9e-100 370.2 293 67.9
Sed0027135 Sechium edule HOM05D001391 ORTHO05D005432 1.9e-100 370.2 319 62.1
Psat7g134560 Pisum sativum HOM05D001391 ORTHO05D005432 2.4e-100 369.8 296 66.9
CANSAT64G0915 Cannabis sativa HOM05D001391 ORTHO05D005432 3.2e-100 369.4 301 64.8
Thhalv10004477m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 3.2e-100 369.4 313 62.0
AT2G03510 Arabidopsis thaliana HOM05D001391 ORTHO05D005432 5.4e-100 368.6 306 63.7
Aa31LG2G7090 Aethionema arabicum HOM05D001391 ORTHO05D005432 7.1e-100 368.2 312 62.8
AL5G13280 Arabidopsis lyrata HOM05D001391 ORTHO05D005432 1.2e-99 367.5 306 63.4
CARHR145860 Cardamine hirsuta HOM05D001391 ORTHO05D005432 1.2e-99 367.5 305 63.6
Sp2g14420 Schrenkiella parvula HOM05D001391 ORTHO05D005432 1.6e-99 367.1 313 61.0
RcHm_v2.0_Chr4g0438461 Rosa chinensis HOM05D001391 ORTHO05D005432 2.7e-99 366.3 294 66.3
Carub.0005s0265 Capsella rubella HOM05D001391 ORTHO05D005432 4.6e-99 365.5 306 63.1
PGSC0003DMG400028375 Solanum tuberosum HOM05D001391 ORTHO05D005432 4.6e-99 365.5 279 70.6
BcaC03g17224 Brassica carinata HOM05D001391 ORTHO05D005432 7.9e-99 364.8 303 63.4
C02p51560 Brassica napus HOM05D001391 ORTHO05D005432 7.9e-99 364.8 303 63.4
BolC2t11243H Brassica oleracea HOM05D001391 ORTHO05D005432 7.9e-99 364.8 303 63.4
AUR62003104 Chenopodium quinoa HOM05D001391 ORTHO05D005432 3.9e-98 362.5 305 63.6
TPR.G34031 Trifolium pratense HOM05D001391 ORTHO05D005432 6.7e-98 361.7 310 62.9
DCAR_030039 Daucus carota HOM05D001391 ORTHO05D005432 8.7e-98 361.3 279 68.8
Ah.02g126880 Amaranthus hybridus HOM05D001391 ORTHO05D005432 1.5e-97 360.5 299 64.2
Glyma.07G225600 Glycine max HOM05D001391 ORTHO05D005432 1.5e-97 360.5 252 73.4
Aqoxy3G03632 Aquilegia oxysepala HOM05D001391 ORTHO05D005432 1.9e-97 360.1 305 63.6
PSO017G5650 Papaver somniferum HOM05D001391 ORTHO05D005432 1.9e-97 360.1 337 58.2
Lj6C779T14 Lonicera japonica HOM05D001391 ORTHO05D005432 2.5e-97 359.8 347 60.5
CsaV3_6G032550 Cucumis sativus L. HOM05D001391 ORTHO05D005432 3.3e-97 359.4 300 64.7
VMungo0251G0716 Vigna mungo HOM05D001391 ORTHO05D005432 4.3e-97 359.0 324 61.1
EL10Ac6g14993 Beta vulgaris HOM05D001391 ORTHO05D005432 5.6e-97 358.6 309 62.8
Migut.L01194 Erythranthe guttata HOM05D001391 ORTHO05D005432 1.3e-96 357.5 305 64.9
Lsat_1_v5_gn_3_53800 Lactuca sativa HOM05D001391 ORTHO05D005432 1.3e-96 357.5 305 64.6
Cpa.g.sc1.121 Carica papaya HOM05D001391 ORTHO05D005432 1.6e-96 357.1 249 73.5
PSO478G1327 Papaver somniferum HOM05D001391 ORTHO05D005432 3.7e-96 355.9 295 63.4
FAN22G1389 Fragaria x ananassa HOM05D001391 ORTHO05D005432 2.4e-95 353.2 299 64.9
Haze_11913 Corylus avellana HOM05D001391 ORTHO05D005432 3.1e-95 352.8 280 67.5
HPP92_020445 Vanilla planifolia HOM05D001391 ORTHO05D005432 4.0e-95 352.4 300 63.7
Nitab4.5_0001487g0070 Nicotiana tabacum HOM05D001391 ORTHO05D005432 5.8e-94 348.6 279 69.2
CSS0036366 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 8.4e-93 344.7 240 76.2
Gorai.013G093700 Gossypium raimondii HOM05D001391 ORTHO05D005432 8.4e-93 344.7 307 60.6
Sabra08G0071900 Salix brachista HOM05D001391 ORTHO05D005432 1.1e-92 344.4 346 59.2
Gohir.D13G081800 Gossypium hirsutum HOM05D001391 ORTHO05D005432 1.9e-92 343.6 352 55.7
SMO364G0146 Selaginella moellendorffii HOM05D001391 ORTHO05D005432 1.9e-92 343.6 300 60.7
Nitab4.5_0000231g0390 Nicotiana tabacum HOM05D001391 ORTHO05D005432 1.6e-91 340.5 276 68.5
QL03p071961 Quercus lobata HOM05D001391 ORTHO05D005432 3.5e-91 339.3 311 61.1
QL03p071737 Quercus lobata HOM05D001391 ORTHO05D005432 6.0e-91 338.6 303 62.0
Zm00001eb020150 Zea mays HOM05D001391 ORTHO05D005432 3.0e-90 336.3 314 58.3
TAR622G0883 Trochodendron aralioides HOM05D001391 ORTHO05D005432 3.3e-89 332.8 330 56.7
Pp3c1_8060 Physcomitrium patens HOM05D001391 ORTHO05D005432 5.7e-89 332.0 294 58.5
Pp3c2_37740 Physcomitrium patens HOM05D001391 ORTHO05D005432 2.1e-88 330.1 294 58.5
AagrBONN_evm.TU.Sc2ySwM_228.3454 Anthoceros agrestis HOM05D001391 ORTHO05D005432 6.2e-88 328.6 295 58.6
Hund05837 Selenicereus undatus HOM05D001391 ORTHO05D005432 1.4e-87 327.4 305 59.3
CsaV3_6G033630 Cucumis sativus L. HOM05D001391 ORTHO05D005432 7.6e-86 321.6 307 59.6
CBR_g22084 Chara braunii HOM05D001391 ORTHO05D005432 5.5e-84 315.5 294 58.8
Dinv16729 Davidia involucrata HOM05D001391 ORTHO05D005432 9.3e-84 314.7 245 69.8
PSO478G2440 Papaver somniferum HOM05D001391 ORTHO05D005432 2.7e-83 313.2 289 59.2
Mapoly0041s0056 Marchantia polymorpha HOM05D001391 ORTHO05D005432 1.9e-81 307.0 293 55.3
Phvul.002G102100 Phaseolus vulgaris HOM05D001391 ORTHO05D005432 1.7e-77 293.9 247 65.2
AUR62007921 Chenopodium quinoa HOM05D001391 ORTHO05D005432 1.9e-76 290.4 250 60.8
ClCG08G010360 Citrullus lanatus HOM05D001391 ORTHO05D005432 1.3e-72 277.7 264 60.2
Thhalv10022792m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 8.2e-72 275.0 313 48.2
Thhalv10022979m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 8.2e-72 275.0 313 48.2
MBI16_g24179_MAGBIO Magnolia biondii HOM05D001391 ORTHO05D005432 2.5e-68 263.5 177 76.8
Nn4g23419 Nelumbo nucifera HOM05D001391 ORTHO05D005432 1.8e-66 257.3 307 51.5
Gohir.D12G164650 Gossypium hirsutum HOM05D001391 ORTHO05D005432 7.4e-65 251.9 197 68.5
Peaxi162Scf00175g00121 Petunia axillaris HOM05D001391 ORTHO05D005432 2.2e-64 250.4 213 62.9
HanXRQChr08g0223901 Helianthus annuus HOM05D001391 ORTHO05D005432 6.3e-64 248.8 191 71.2
Sc11g0002420 Simmondsia chinensis HOM05D001391 ORTHO05D005432 3.1e-63 246.5 243 55.1
Eucgr.B03155 Eucalyptus grandis HOM05D001391 ORTHO05D005432 1.2e-62 244.6 228 59.2
Nn3g17437 Nelumbo nucifera HOM05D001391 ORTHO05D005432 4.7e-59 232.6 176 70.5
Gorai.008G177300 Gossypium raimondii HOM05D001391 ORTHO05D005432 7.0e-55 218.8 165 70.9
Eucgr.B03159 Eucalyptus grandis HOM05D001391 ORTHO05D005432 1.7e-53 214.2 196 60.2
Thecc.02G331800 Theobroma cacao HOM05D001391 ORTHO05D005432 1.4e-47 194.5 171 58.5
Gohir.A13G082200 Gossypium hirsutum HOM05D001391 ORTHO05D005432 5.9e-46 189.1 174 56.9
CDE02G0606 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 2.9e-45 186.8 181 54.1
SEGI_41081 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 6.8e-42 175.6 131 67.9
SEGI_06703 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 8.8e-42 175.3 131 68.7
SEGI_37700 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.3e-37 160.6 122 65.6
Hma1.2p1_1826F.1_g304410 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 1.8e-34 151.0 130 63.8
Hma1.2p1_3404F.1_g335810 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 3.2e-31 140.2 118 68.6
QL03p071882 Quercus lobata HOM05D001391 ORTHO05D005432 2.0e-30 137.5 115 70.4
Hund25180 Selenicereus undatus HOM05D001391 ORTHO05D005432 8.6e-29 132.1 98 69.4
Hund25181 Selenicereus undatus HOM05D001391 ORTHO05D005432 1.5e-25 121.3 140 46.4
Gohir.A13G082366 Gossypium hirsutum HOM05D001391 ORTHO05D005432 1.0e-21 108.6 88 67.0
SEGI_28419 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.7e-21 107.8 86 61.6
BcaB07g30295 Brassica carinata HOM05D001391 ORTHO05D005432 1.5e-17 94.7 79 70.9
QL01p050911 Quercus lobata HOM05D001391 ORTHO05D005432 7.8e-14 82.4 73 67.1
Mapoly0004s0019 Marchantia polymorpha HOM05D001391 ORTHO05D005432 3.4e-09 67.0 245 24.9
Rhsim12G0103400 Rhododendron simsii HOM05D002135 ORTHO05D002134 2.4e-07 60.8 75 45.3
Peaxi162Scf00449g00823 Petunia axillaris HOM05D002135 ORTHO05D002134 3.5e-06 57.0 78 42.3
Aqoxy2G00111 Aquilegia oxysepala HOM05D002135 ORTHO05D002134 6.0e-06 56.2 76 42.1
DCAR_026475 Daucus carota HOM05D002135 ORTHO05D002134 7.8e-06 55.8 79 43.0


User provided reference genes

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