Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0073500 Rhododendron simsii HOM05D004844 ORTHO05D006036 0.0e+00 1745.7 945 100.0
CSS0013036 Camellia sinensis var. sinensis HOM05D004844 ORTHO05D006036 0.0e+00 1176.0 963 72.4
Actinidia19906 Actinidia chinensis HOM05D004844 ORTHO05D006036 0.0e+00 1114.4 845 74.3
GSVIVG01012255001 Vitis vinifera HOM05D004844 ORTHO05D006036 9.9e-303 1043.5 914 65.8
Cfa008853 Carpinus fangiana HOM05D004844 ORTHO05D006036 5.4e-301 1037.7 934 64.8
Cc11_g11690 Coffea canephora HOM05D004844 ORTHO05D006036 2.5e-298 1028.9 916 65.4
Thecc.02G325500 Theobroma cacao HOM05D004844 ORTHO05D006036 3.9e-291 1005.0 934 61.6
TAR627G0787 Trochodendron aralioides HOM05D004844 ORTHO05D006036 5.3e-288 994.6 930 63.1
Gohir.D04G190100 Gossypium hirsutum HOM05D004844 ORTHO05D006036 2.0e-287 992.6 951 61.2
Cpa.g.sc1.164 Carica papaya HOM05D004844 ORTHO05D006036 2.9e-286 988.8 932 61.8
Dinv20143 Davidia involucrata HOM05D004844 ORTHO05D006036 6.4e-286 987.6 880 66.1
Gorai.012G185400 Gossypium raimondii HOM05D004844 ORTHO05D006036 3.2e-285 985.3 952 60.8
Gohir.A04G145600 Gossypium hirsutum HOM05D004844 ORTHO05D006036 6.0e-284 981.1 934 61.5
Nitab4.5_0011617g0010 Nicotiana tabacum HOM05D004844 ORTHO05D006036 8.7e-283 977.2 966 62.1
TWI79G0207 Tripterygium wilfordii HOM05D004844 ORTHO05D006036 1.1e-282 976.9 930 61.6
Potri.010G140100 Populus trichocarpa HOM05D004844 ORTHO05D006036 4.8e-281 971.5 939 61.4
COL.COLO4_27840 Corchorus olitorius HOM05D004844 ORTHO05D006036 1.8e-280 969.5 984 59.0
MBI19_g00156_MAGBIO Magnolia biondii HOM05D004844 ORTHO05D006036 2.0e-279 966.1 1040 56.9
DCAR_022184 Daucus carota HOM05D004844 ORTHO05D006036 1.3e-278 963.4 914 60.7
Ciclev10030646m.g Citrus clementina HOM05D004844 ORTHO05D006036 1.9e-277 959.5 937 59.4
CANSAT64G2735 Cannabis sativa HOM05D004844 ORTHO05D006036 6.0e-276 954.5 948 60.5
PGSC0003DMG400028356 Solanum tuberosum HOM05D004844 ORTHO05D006036 3.9e-275 951.8 926 61.0
Manes.17G024283 Manihot esculenta HOM05D004844 ORTHO05D006036 8.7e-275 950.7 936 59.4
Sabra10G0108200 Salix brachista HOM05D004844 ORTHO05D006036 5.6e-274 948.0 942 60.8
Nitab4.5_0000027g0110 Nicotiana tabacum HOM05D004844 ORTHO05D006036 4.8e-273 944.9 965 60.2
Nn4g23518 Nelumbo nucifera HOM05D004844 ORTHO05D006036 9.0e-272 940.6 958 59.4
PGR102G1068 Punica granatum HOM05D004844 ORTHO05D006036 3.8e-270 935.3 969 57.0
Sopen05g006740 Solanum pennellii HOM05D004844 ORTHO05D006036 4.9e-270 934.9 926 60.5
Sc04g0007400 Simmondsia chinensis HOM05D004844 ORTHO05D006036 8.4e-270 934.1 937 59.4
Solyc05g011990.4 Solanum lycopersicum HOM05D004844 ORTHO05D006036 4.2e-269 931.8 926 60.2
Eucgr.B03138 Eucalyptus grandis HOM05D004844 ORTHO05D006036 2.3e-267 926.0 941 59.4
Duzib251G0783 Durio zibethinus HOM05D004844 ORTHO05D006036 3.0e-267 925.6 956 58.8
CiPaw.06G094100 Carya illinoinensis HOM05D004844 ORTHO05D006036 3.9e-267 925.2 843 63.6
MD16G1058200 Malus domestica HOM05D004844 ORTHO05D006036 2.5e-266 922.5 937 57.5
CAN.G1021.26 Capsicum annuum HOM05D004844 ORTHO05D006036 5.7e-266 921.4 937 59.1
Aqoxy3G03719 Aquilegia oxysepala HOM05D004844 ORTHO05D006036 6.3e-265 917.9 945 57.9
Glyma.02G003100 Glycine max HOM05D004844 ORTHO05D006036 1.2e-263 913.7 941 56.7
Glyma.10G005700 Glycine max HOM05D004844 ORTHO05D006036 4.2e-261 905.2 942 57.9
Phvul.007G274500 Phaseolus vulgaris HOM05D004844 ORTHO05D006036 7.2e-261 904.4 922 57.8
SGA_v2.0_scaffold287G47183 Striga asiatica HOM05D004844 ORTHO05D006036 1.2e-260 903.7 947 58.6
THA.LOC104821991 Tarenaya hassleriana HOM05D004844 ORTHO05D006036 1.4e-259 900.2 966 57.6
Prupe.1G290900 Prunus persica HOM05D004844 ORTHO05D006036 2.2e-257 892.9 977 56.1
ECA233G1780 Erigeron canadensis HOM05D004844 ORTHO05D006036 6.9e-256 887.9 941 56.2
MSTRG.13461 Avicennia marina HOM05D004844 ORTHO05D006036 6.5e-254 881.3 932 57.3
HanXRQChr06g0168931 Helianthus annuus HOM05D004844 ORTHO05D006036 6.5e-254 881.3 934 56.9
AUR62003071 Chenopodium quinoa HOM05D004844 ORTHO05D006036 5.5e-253 878.2 926 56.2
AUR62007885 Chenopodium quinoa HOM05D004844 ORTHO05D006036 5.5e-253 878.2 919 56.0
Medtr1g064300 Medicago truncatula HOM05D004844 ORTHO05D006036 1.4e-251 873.6 946 55.3
Lj6A775T24 Lonicera japonica HOM05D004844 ORTHO05D006036 1.8e-251 873.2 971 56.3
Ah.03g138670 Amaranthus hybridus HOM05D004844 ORTHO05D006036 3.9e-251 872.1 929 55.0
EL10Ac6g14694 Beta vulgaris HOM05D004844 ORTHO05D006036 2.2e-249 866.3 936 55.8
RcHm_v2.0_Chr4g0437801 Rosa chinensis HOM05D004844 ORTHO05D006036 2.2e-249 866.3 980 54.6
Lsat_1_v5_gn_8_35620 Lactuca sativa HOM05D004844 ORTHO05D006036 2.8e-249 865.9 961 56.3
VMungo0720G2226 Vigna mungo HOM05D004844 ORTHO05D006036 3.7e-249 865.5 974 55.5
Medtr1g442830 Medicago truncatula HOM05D004844 ORTHO05D006036 3.1e-248 862.4 946 54.2
Migut.E00244 Erythranthe guttata HOM05D004844 ORTHO05D006036 1.2e-247 860.5 917 56.1
Peaxi162Scf00175g00927 Petunia axillaris HOM05D004844 ORTHO05D006036 1.4e-243 847.0 907 57.1
SalBow4G3252 Salvia bowleyana HOM05D004844 ORTHO05D006036 2.3e-243 846.3 1000 53.9
Aa31LG7G8740 Aethionema arabicum HOM05D004844 ORTHO05D006036 3.9e-243 845.5 926 54.6
Lalb_Chr25g0284481 Lupinus albus HOM05D004844 ORTHO05D006036 1.5e-242 843.6 935 55.1
Lj6g0000403 Lotus japonicus HOM05D004844 ORTHO05D006036 5.7e-242 841.6 931 54.8
Ca_12009_v3 Cicer arietinum L. HOM05D004844 ORTHO05D006036 7.4e-242 841.3 967 54.8
Thhalv10018096m.g Eutrema salsugineum HOM05D004844 ORTHO05D006036 1.7e-241 840.1 934 55.2
MELO3C011408.2 Cucumis melo HOM05D004844 ORTHO05D006036 2.0e-239 833.2 940 54.6
FAN12G1456 Fragaria x ananassa HOM05D004844 ORTHO05D006036 2.6e-239 832.8 915 55.6
Psat1g047040 Pisum sativum HOM05D004844 ORTHO05D006036 2.6e-239 832.8 974 53.1
FAN17G0509 Fragaria x ananassa HOM05D004844 ORTHO05D006036 7.7e-239 831.2 918 55.4
FAN22G0359 Fragaria x ananassa HOM05D004844 ORTHO05D006036 1.7e-238 830.1 919 55.9
Sp5g24170 Schrenkiella parvula HOM05D004844 ORTHO05D006036 2.9e-238 829.3 936 53.8
PSO782G4088 Papaver somniferum HOM05D004844 ORTHO05D006036 4.0e-235 818.9 927 52.3
PSO063G4789 Papaver somniferum HOM05D004844 ORTHO05D006036 5.2e-235 818.5 923 52.8
Carub.0002s1569 Capsella rubella HOM05D004844 ORTHO05D006036 6.7e-235 818.1 929 53.3
arahy.Tifrunner.gnm1.ann1.Q1MRHA Arachis hypogaea HOM05D004844 ORTHO05D006036 1.5e-234 817.0 934 54.6
Atru.BG.298.p Acer truncatum HOM05D004844 ORTHO05D006036 2.0e-234 816.6 919 53.8
CARHR061950 Cardamine hirsuta HOM05D004844 ORTHO05D006036 5.7e-234 815.1 936 54.1
CsaV3_6G033830 Cucumis sativus L. HOM05D004844 ORTHO05D006036 9.7e-234 814.3 938 53.4
Sed0010809 Sechium edule HOM05D004844 ORTHO05D006036 1.3e-233 813.9 931 54.0
AL2G28120 Arabidopsis lyrata HOM05D004844 ORTHO05D006036 1.8e-232 810.1 928 54.1
arahy.Tifrunner.gnm1.ann1.H7MRPA Arachis hypogaea HOM05D004844 ORTHO05D006036 2.7e-231 806.2 971 53.1
arahy.Tifrunner.gnm1.ann1.79UB1D Arachis hypogaea HOM05D004844 ORTHO05D006036 3.5e-231 805.8 972 52.5
CDE10G1236 Ceratophyllum demersum HOM05D004844 ORTHO05D006036 2.2e-230 803.1 907 53.3
FvH4_4g29570 Fragaria vesca HOM05D004844 ORTHO05D006036 3.8e-230 802.4 914 53.8
AT1G69070 Arabidopsis thaliana HOM05D004844 ORTHO05D006036 2.5e-229 799.7 932 53.9
ClCG08G010550 Citrullus lanatus HOM05D004844 ORTHO05D006036 5.5e-229 798.5 944 53.5
C02p25790 Brassica napus HOM05D004844 ORTHO05D006036 2.7e-228 796.2 936 53.6
A02p15610 Brassica napus HOM05D004844 ORTHO05D006036 2.3e-227 793.1 944 52.3
BolC2t08648H Brassica oleracea HOM05D004844 ORTHO05D006036 1.4e-224 783.9 942 53.1
Os03g0598200 Oryza sativa ssp. japonica HOM05D004844 ORTHO05D006036 1.4e-224 783.9 940 52.1
BraA02t06622Z Brassica rapa HOM05D004844 ORTHO05D006036 5.9e-223 778.5 948 51.8
Zm00001eb049910 Zea mays HOM05D004844 ORTHO05D006036 3.8e-222 775.8 933 52.4
ATR0827G008 Amborella trichopoda HOM05D004844 ORTHO05D006036 5.7e-218 761.9 857 54.7
FAN07G0902 Fragaria x ananassa HOM05D004844 ORTHO05D006036 6.6e-214 748.4 956 51.2
BcaC03g15030 Brassica carinata HOM05D004844 ORTHO05D006036 6.2e-188 662.1 929 47.6
MD13G1058900 Malus domestica HOM05D004844 ORTHO05D006036 2.4e-187 660.2 817 50.8
AagrBONN_evm.TU.Sc2ySwM_228.4292 Anthoceros agrestis HOM05D004844 ORTHO05D006036 4.3e-181 639.4 955 44.9
Oeu019000.3 Olea europaea HOM05D004844 ORTHO05D006036 9.0e-171 605.1 688 56.8
Pp3c13_7740 Physcomitrium patens HOM05D004844 ORTHO05D006036 5.8e-170 602.4 964 43.4
TPR.G25170 Trifolium pratense HOM05D004844 ORTHO05D006036 2.6e-162 577.0 444 66.4
Mapoly0013s0047 Marchantia polymorpha HOM05D004844 ORTHO05D006036 8.4e-161 572.0 962 41.6
Glyma.18G236233 Glycine max HOM05D004844 ORTHO05D006036 9.7e-149 531.9 395 70.1
TAR627G1107 Trochodendron aralioides HOM05D004844 ORTHO05D006036 8.2e-140 502.3 611 55.5
Medtr1g442820 Medicago truncatula HOM05D004844 ORTHO05D006036 5.3e-139 499.6 577 52.2
Oeu063767.1 Olea europaea HOM05D004844 ORTHO05D006036 9.1e-139 498.8 518 59.7
Nitab4.5_0000027g0130 Nicotiana tabacum HOM05D004844 ORTHO05D006036 1.5e-138 498.0 615 53.0
CBR_g4135 Chara braunii HOM05D004844 ORTHO05D006036 1.6e-119 434.9 910 38.6
SEGI_27898 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 1.0e-105 389.0 490 53.7
unitig_62.g23699 Utricularia gibba HOM05D004844 ORTHO05D006036 7.8e-98 362.8 601 43.9
TAR623G1540 Trochodendron aralioides HOM05D004844 ORTHO05D006036 9.5e-88 329.3 265 68.3
Rhsim10G0117800 Rhododendron simsii HOM05D004844 ORTHO05D006036 6.8e-86 323.2 193 83.9
TAR623G0736 Trochodendron aralioides HOM05D004844 ORTHO05D006036 4.3e-72 277.3 327 55.4
Haze_11873 Corylus avellana HOM05D004844 ORTHO05D006036 1.2e-69 269.2 298 56.7
TAR623G0992 Trochodendron aralioides HOM05D004844 ORTHO05D006036 8.4e-68 263.1 329 54.7
HPP92_012262 Vanilla planifolia HOM05D004844 ORTHO05D008684 7.1e-67 260.0 262 54.6
TPR.G25179 Trifolium pratense HOM05D004844 ORTHO05D006036 2.1e-66 258.5 314 53.5
SEGI_03778 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 1.0e-65 256.1 409 48.7
PRCOL_00006390 Prasinoderma coloniale HOM05D004844 ORTHO05D006036 4.8e-63 247.3 978 28.3
SEGI_13774 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 8.1e-63 246.5 265 50.2
Glyma.18G236167 Glycine max HOM05D004844 ORTHO05D006036 7.6e-61 240.0 257 56.4
HPP92_012261 Vanilla planifolia HOM05D004844 ORTHO05D006036 1.2e-45 189.5 375 39.5
Cre06.g260850 Chlamydomonas reinhardtii HOM05D004844 ORTHO05D006036 1.6e-42 179.1 1132 24.6
AagrBONN_evm.TU.Sc2ySwM_362.1117 Anthoceros agrestis HOM05D004844 ORTHO05D006036 1.4e-35 156.0 326 40.8
EL10Ac3g06594 Beta vulgaris HOM05D004844 ORTHO05D006036 2.2e-31 142.1 99 67.7
Oeu048129.1 Olea europaea HOM05D004844 ORTHO05D006036 6.3e-31 140.6 337 40.7
EL10Ac6g14485 Beta vulgaris HOM05D004844 ORTHO05D006036 5.9e-29 134.0 114 59.6
Cfa022757 Carpinus fangiana HOM05D004844 ORTHO05D126324 8.5e-28 130.2 745 25.5
EL10Ac5g11674 Beta vulgaris HOM05D004844 ORTHO05D010835 2.5e-27 128.6 111 59.5
Rhsim10G0117900 Rhododendron simsii HOM05D004844 ORTHO05D006036 2.3e-25 122.1 83 84.3
MCO13G646 Micromonas commoda HOM05D004844 ORTHO05D006036 4.3e-24 117.9 683 23.7
unitig_62.g23698 Utricularia gibba HOM05D004844 ORTHO05D006036 5.7e-24 117.5 220 39.5
SEGI_26642 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 1.1e-19 103.2 135 43.7
BolC2t08646H Brassica oleracea HOM05D004844 ORTHO05D006036 1.9e-19 102.4 92 64.1
Rhsim04G0143200 Rhododendron simsii HOM05D004844 ORTHO05D006036 5.5e-19 100.9 62 85.5
SEGI_11983 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 7.2e-19 100.5 130 44.6
Actinidia04686 Actinidia chinensis HOM05D004844 ORTHO05D006036 9.4e-19 100.1 105 57.1
Actinidia04685 Actinidia chinensis HOM05D004844 ORTHO05D006036 1.6e-18 99.4 80 65.0
C02p25770 Brassica napus HOM05D004844 ORTHO05D006036 1.6e-18 99.4 92 63.0
SEGI_15727 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 3.0e-17 95.1 116 50.9
Actinidia04727 Actinidia chinensis HOM05D004844 ORTHO05D006036 3.3e-16 91.7 146 46.6
Dinv34035 Davidia involucrata HOM05D004844 ORTHO05D006036 1.1e-14 86.7 140 44.3
CAN.G1021.25 Capsicum annuum HOM05D004844 ORTHO05D006036 1.4e-14 86.3 206 32.0
Actinidia04726 Actinidia chinensis HOM05D004844 ORTHO05D006036 2.0e-13 82.4 43 90.7
MD13G1058800 Malus domestica HOM05D004844 ORTHO05D006036 6.5e-12 77.4 69 63.8
Rhsim10G0118000 Rhododendron simsii HOM05D005261 ORTHO05D006180 6.5e-12 77.4 94 58.5
Rhsim04G0142900 Rhododendron simsii HOM05D004844 ORTHO05D006036 1.1e-11 76.6 51 80.4
Actinidia27764 Actinidia chinensis HOM05D004844 ORTHO05D006036 5.5e-11 74.3 41 85.4
ATR0735G001 Amborella trichopoda HOM05D004844 ORTHO05D006036 1.8e-09 69.3 82 48.8
RcHm_v2.0_Chr1g0340811 Rosa chinensis HOM05D004844 ORTHO05D006036 8.8e-09 67.0 58 62.1


User provided reference genes

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