Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0063600 Rhododendron simsii HOM05D004646 ORTHO05D005829 1.2e-267 926.0 478 100.0
Dinv16641 Davidia involucrata HOM05D004646 ORTHO05D005829 2.1e-115 420.2 448 54.5
vmacro01257 Vaccinium macrocarpon HOM05D004646 ORTHO05D005829 3.9e-114 416.0 356 66.0
CSS0046070 Camellia sinensis var. sinensis HOM05D004646 ORTHO05D005829 5.1e-114 415.6 431 55.9
Actinidia31896 Actinidia chinensis HOM05D004646 ORTHO05D005829 3.4e-110 402.9 431 55.9
Hma1.2p1_0795F.1_g218775 Hydrangea macrophylla HOM05D004646 ORTHO05D005829 4.1e-103 379.4 446 50.4
Thecc.02G347000 Theobroma cacao HOM05D004646 ORTHO05D005829 9.0e-103 378.3 445 51.2
CiPaw.05G135800 Carya illinoinensis HOM05D004646 ORTHO05D005829 6.1e-99 365.5 441 49.4
COL.COLO4_23008 Corchorus olitorius HOM05D004646 ORTHO05D005829 6.1e-99 365.5 442 49.3
Nn3g17224 Nelumbo nucifera HOM05D004646 ORTHO05D005829 8.7e-98 361.7 381 52.5
QL03p064307 Quercus lobata HOM05D004646 ORTHO05D005829 1.1e-97 361.3 394 52.8
Sc14g0008260 Simmondsia chinensis HOM05D004646 ORTHO05D005829 3.3e-97 359.8 379 52.8
Duzib251G0705 Durio zibethinus HOM05D004646 ORTHO05D005829 4.3e-97 359.4 441 48.8
Gorai.012G187500 Gossypium raimondii HOM05D004646 ORTHO05D005829 4.3e-97 359.4 443 49.9
Cfa008987 Carpinus fangiana HOM05D004646 ORTHO05D005829 7.4e-97 358.6 412 49.5
CsaV3_5G032630 Cucumis sativus L. HOM05D004646 ORTHO05D005829 9.7e-97 358.2 413 50.1
Cc11_g13050 Coffea canephora HOM05D004646 ORTHO05D005829 1.3e-96 357.8 396 50.8
Manes.05G100900 Manihot esculenta HOM05D004646 ORTHO05D005829 1.3e-96 357.8 423 49.4
ClCG05G024330 Citrullus lanatus HOM05D004646 ORTHO05D005829 1.6e-96 357.5 412 49.3
AUR62028786 Chenopodium quinoa HOM05D004646 ORTHO05D005829 2.8e-96 356.7 431 49.4
Gohir.A04G147800 Gossypium hirsutum HOM05D004646 ORTHO05D005829 3.7e-96 356.3 441 49.2
Gohir.D04G192100 Gossypium hirsutum HOM05D004646 ORTHO05D005829 3.7e-96 356.3 443 50.1
Phvul.L004046 Phaseolus vulgaris HOM05D004646 ORTHO05D005829 3.7e-96 356.3 429 47.8
Phvul.011G179800 Phaseolus vulgaris HOM05D004646 ORTHO05D005829 4.8e-96 355.9 422 48.1
arahy.Tifrunner.gnm1.ann1.K6CIAB Arachis hypogaea HOM05D004646 ORTHO05D005829 8.2e-96 355.1 405 50.1
MELO3C012090.2 Cucumis melo HOM05D004646 ORTHO05D005829 1.1e-95 354.8 413 49.4
Atru.chr11.1794 Acer truncatum HOM05D004646 ORTHO05D005829 1.4e-95 354.4 413 50.1
Eucgr.B03438 Eucalyptus grandis HOM05D004646 ORTHO05D005829 1.4e-95 354.4 406 50.5
ECA233G2883 Erigeron canadensis HOM05D004646 ORTHO05D005829 1.8e-95 354.0 402 50.7
VMungo1127G0944 Vigna mungo HOM05D004646 ORTHO05D005829 1.8e-95 354.0 429 48.3
Lalb_Chr09g0329301 Lupinus albus HOM05D004646 ORTHO05D005829 3.1e-95 353.2 428 47.7
GSVIVG01019995001 Vitis vinifera HOM05D004646 ORTHO05D005829 3.1e-95 353.2 419 50.8
CANSAT64G1881 Cannabis sativa HOM05D004646 ORTHO05D005829 5.3e-95 352.4 376 51.9
PGSC0003DMG400031270 Solanum tuberosum HOM05D004646 ORTHO05D005829 1.2e-94 351.3 422 49.8
Ciclev10032082m.g Citrus clementina HOM05D004646 ORTHO05D005829 1.5e-94 350.9 402 49.5
Lj4g0000065 Lotus japonicus HOM05D004646 ORTHO05D005829 4.5e-94 349.4 379 50.4
Potri.008G147600 Populus trichocarpa HOM05D004646 ORTHO05D005829 4.5e-94 349.4 370 50.8
Sed0009585 Sechium edule HOM05D004646 ORTHO05D005829 5.9e-94 349.0 393 50.1
Psat4g134400 Pisum sativum HOM05D004646 ORTHO05D005829 7.7e-94 348.6 379 50.1
Sopen05g003380 Solanum pennellii HOM05D004646 ORTHO05D005829 7.7e-94 348.6 421 50.4
Solyc05g007500.4 Solanum lycopersicum HOM05D004646 ORTHO05D005829 1.0e-93 348.2 404 50.7
PGR102G1495 Punica granatum HOM05D004646 ORTHO05D005829 2.2e-93 347.1 367 52.6
MSTRG.7804 Avicennia marina HOM05D004646 ORTHO05D005829 5.0e-93 345.9 402 50.0
Glyma.18G119400 Glycine max HOM05D004646 ORTHO05D005829 6.5e-93 345.5 427 47.1
Peaxi162Scf00541g00118 Petunia axillaris HOM05D004646 ORTHO05D005829 8.5e-93 345.1 404 51.5
arahy.Tifrunner.gnm1.ann1.9WQ92K Arachis hypogaea HOM05D004646 ORTHO05D005829 1.1e-92 344.7 405 49.1
CAN.G58.23 Capsicum annuum HOM05D004646 ORTHO05D005829 1.1e-92 344.7 375 52.5
Lsat_1_v5_gn_8_53300 Lactuca sativa HOM05D004646 ORTHO05D005829 1.1e-92 344.7 374 51.9
Sabra08G0112200 Salix brachista HOM05D004646 ORTHO05D005829 2.5e-92 343.6 378 49.5
PSO832G2587 Papaver somniferum HOM05D004646 ORTHO05D005829 5.5e-92 342.4 378 51.1
PSO063G0788 Papaver somniferum HOM05D004646 ORTHO05D005829 9.4e-92 341.7 378 50.8
Lalb_Chr05g0220381 Lupinus albus HOM05D004646 ORTHO05D005829 1.2e-91 341.3 445 45.8
HanXRQChr12g0362151 Helianthus annuus HOM05D004646 ORTHO05D005829 2.7e-91 340.1 374 50.5
Medtr8g467540 Medicago truncatula HOM05D004646 ORTHO05D005829 2.7e-91 340.1 417 47.5
Nitab4.5_0001503g0160 Nicotiana tabacum HOM05D004646 ORTHO05D005829 2.7e-91 340.1 442 48.4
MD13G1072600 Malus domestica HOM05D004646 ORTHO05D005829 3.6e-91 339.7 448 46.4
CDE09G0693 Ceratophyllum demersum HOM05D004646 ORTHO05D005829 4.6e-91 339.3 350 52.6
Oeu055120.1 Olea europaea HOM05D004646 ORTHO05D005829 4.6e-91 339.3 375 51.5
THA.LOC104801795 Tarenaya hassleriana HOM05D004646 ORTHO05D005829 6.1e-91 339.0 379 49.3
MD16G1073400 Malus domestica HOM05D004646 ORTHO05D005829 7.9e-91 338.6 447 46.8
Prupe.1G273600 Prunus persica HOM05D004646 ORTHO05D005829 1.0e-90 338.2 414 47.1
SalBow2G3250 Salvia bowleyana HOM05D004646 ORTHO05D005829 1.0e-90 338.2 390 49.7
Glyma.08G300800 Glycine max HOM05D004646 ORTHO05D005829 2.3e-90 337.0 359 51.0
Hund25246 Selenicereus undatus HOM05D004646 ORTHO05D005829 4.3e-89 332.8 397 48.4
Sp1g12620 Schrenkiella parvula HOM05D004646 ORTHO05D005829 9.7e-89 331.6 381 48.6
EL10Ac6g13196 Beta vulgaris HOM05D004646 ORTHO05D005829 1.3e-88 331.3 448 47.3
A08p32030 Brassica napus HOM05D004646 ORTHO05D005829 1.3e-88 331.3 351 51.6
Thhalv10008130m.g Eutrema salsugineum HOM05D004646 ORTHO05D005829 2.2e-88 330.5 413 47.0
Aqoxy3G03371 Aquilegia oxysepala HOM05D004646 ORTHO05D005829 8.2e-88 328.6 436 46.8
A06p10240 Brassica napus HOM05D004646 ORTHO05D005829 8.2e-88 328.6 376 48.1
BraA06t24207Z Brassica rapa HOM05D004646 ORTHO05D005829 8.2e-88 328.6 376 48.1
FAN17G1826 Fragaria x ananassa HOM05D004646 ORTHO05D005829 1.4e-87 327.8 372 49.2
C05p12020 Brassica napus HOM05D004646 ORTHO05D005829 4.1e-87 326.2 377 48.3
BolC5t29957H Brassica oleracea HOM05D004646 ORTHO05D005829 4.1e-87 326.2 377 48.3
FAN12G2979 Fragaria x ananassa HOM05D004646 ORTHO05D005829 5.3e-87 325.9 359 49.3
SGA_v2.0_scaffold53G19364 Striga asiatica HOM05D004646 ORTHO05D005829 2.0e-86 323.9 382 49.7
unitig_747.g21177 Utricularia gibba HOM05D004646 ORTHO05D005829 2.0e-86 323.9 376 48.7
Aa31LG1G790 Aethionema arabicum HOM05D004646 ORTHO05D005829 2.6e-86 323.6 350 49.7
FAN07G2721 Fragaria x ananassa HOM05D004646 ORTHO05D005829 3.4e-86 323.2 428 44.6
ATR0564G518 Amborella trichopoda HOM05D004646 ORTHO05D005829 1.7e-85 320.9 358 48.0
FvH4_4g31430 Fragaria vesca HOM05D004646 ORTHO05D005829 1.7e-85 320.9 359 48.7
Carub.0001s1395 Capsella rubella HOM05D004646 ORTHO05D005829 2.9e-85 320.1 417 45.1
RcHm_v2.0_Chr4g0439911 Rosa chinensis HOM05D004646 ORTHO05D005829 5.0e-85 319.3 431 44.8
BcaB03g13106 Brassica carinata HOM05D004646 ORTHO05D005829 8.5e-85 318.5 425 44.7
C08p16560 Brassica napus HOM05D004646 ORTHO05D005829 8.5e-85 318.5 351 49.6
BcaC07g38729 Brassica carinata HOM05D004646 ORTHO05D005829 2.5e-84 317.0 351 49.3
BraA08t35124Z Brassica rapa HOM05D004646 ORTHO05D005829 2.5e-84 317.0 356 48.6
BolC8t49284H Brassica oleracea HOM05D004646 ORTHO05D005829 3.2e-84 316.6 351 49.0
AT1G14270 Arabidopsis thaliana HOM05D004646 ORTHO05D005829 1.2e-83 314.7 376 46.5
Zm00001eb312490 Zea mays HOM05D004646 ORTHO05D005829 3.6e-83 313.2 450 45.8
AL1G26150 Arabidopsis lyrata HOM05D004646 ORTHO05D005829 7.9e-83 312.0 418 43.5
Migut.L01300 Erythranthe guttata HOM05D004646 ORTHO05D005829 7.4e-81 305.4 368 47.3
Zm00001eb041360 Zea mays HOM05D004646 ORTHO05D005829 3.7e-80 303.1 445 43.6
Hund05883 Selenicereus undatus HOM05D004646 ORTHO05D005829 4.8e-80 302.8 332 52.1
Cpa.g.sc128.19 Carica papaya HOM05D004646 ORTHO05D005829 9.1e-79 298.5 325 52.3
HPP92_027580 Vanilla planifolia HOM05D004646 ORTHO05D005829 2.2e-77 293.9 356 46.3
AUR62005771 Chenopodium quinoa HOM05D004646 ORTHO05D005829 1.9e-76 290.8 431 42.9
DCAR_027410 Daucus carota HOM05D004646 ORTHO05D005829 3.2e-76 290.0 429 44.1
Haze_12017 Corylus avellana HOM05D004646 ORTHO05D005829 4.0e-74 283.1 288 53.1
Nitab4.5_0011071g0010 Nicotiana tabacum HOM05D004646 ORTHO05D005829 1.3e-72 278.1 435 42.5
MBI05_g08286_MAGBIO Magnolia biondii HOM05D004646 ORTHO05D005829 2.8e-72 276.9 450 40.9
QL03p063033 Quercus lobata HOM05D004646 ORTHO05D005829 6.3e-72 275.8 276 55.1
BcaC05g25320 Brassica carinata HOM05D004646 ORTHO05D005829 8.2e-72 275.4 334 47.3
Migut.L01298 Erythranthe guttata HOM05D004646 ORTHO05D005829 1.8e-71 274.2 413 42.1
FAN22G0666 Fragaria x ananassa HOM05D004646 ORTHO05D005829 2.2e-69 267.3 324 46.3
Lj2g0013736 Lotus japonicus HOM05D004646 ORTHO05D005829 1.6e-67 261.2 413 39.0
TPR.G31818 Trifolium pratense HOM05D004646 ORTHO05D005829 1.8e-66 257.7 262 50.4
Migut.L01299 Erythranthe guttata HOM05D004646 ORTHO05D005829 3.7e-64 250.0 360 42.2
Lj2g0003230 Lotus japonicus HOM05D004646 ORTHO05D005829 7.0e-63 245.7 430 37.2
VMungo0251G2645 Vigna mungo HOM05D004646 ORTHO05D005829 5.9e-62 242.7 253 50.2
TAR371G0666 Trochodendron aralioides HOM05D004646 ORTHO05D005829 1.5e-57 228.0 301 44.5
arahy.Tifrunner.gnm1.ann1.33WNW9 Arachis hypogaea HOM05D004646 ORTHO05D005829 7.5e-57 225.7 380 36.8
Mapoly0033s0092 Marchantia polymorpha HOM05D004646 ORTHO05D005829 1.2e-54 218.4 374 35.6
CARHR014690 Cardamine hirsuta HOM05D004646 ORTHO05D005829 2.6e-49 200.7 163 56.4
Nn4g23150 Nelumbo nucifera HOM05D004646 ORTHO05D005829 4.4e-49 199.9 258 46.1
Pp3c21_22610 Physcomitrium patens HOM05D004646 ORTHO05D005829 1.2e-46 191.8 448 33.7
SMO007G0001 Selaginella moellendorffii HOM05D004646 ORTHO05D005829 3.9e-45 186.8 325 37.2
SMO200G0049 Selaginella moellendorffii HOM05D004646 ORTHO05D005829 3.9e-45 186.8 325 37.2
AagrBONN_evm.TU.Sc2ySwM_228.1869 Anthoceros agrestis HOM05D004646 ORTHO05D005829 5.0e-45 186.4 348 34.2
CBR_g52133 Chara braunii HOM05D004646 ORTHO05D005829 1.1e-44 185.3 350 35.4
TAR629G0643 Trochodendron aralioides HOM05D004646 ORTHO05D005829 1.9e-44 184.5 383 31.9
QL03p063041 Quercus lobata HOM05D004646 ORTHO05D005829 9.5e-44 182.2 400 36.0
Nn1g09141 Nelumbo nucifera HOM05D004646 ORTHO05D005829 2.1e-43 181.0 381 33.3
CDE04G3684 Ceratophyllum demersum HOM05D004646 ORTHO05D005829 6.6e-37 159.5 335 32.2
PSO767G0002 Papaver somniferum HOM05D004646 ORTHO05D005829 2.5e-36 157.5 383 28.5
QL03p064300 Quercus lobata HOM05D004646 ORTHO05D005829 1.1e-34 152.1 301 37.5
Ca_07115_v3 Cicer arietinum L. HOM05D004646 ORTHO05D005829 5.8e-33 146.4 104 60.6
FAN09G3389 Fragaria x ananassa HOM05D004646 ORTHO05D005829 8.6e-29 132.5 98 61.2
MBI19_g09320_MAGBIO Magnolia biondii HOM05D004646 ORTHO05D005829 8.6e-29 132.5 225 34.2
PSO384G3479 Papaver somniferum HOM05D004646 ORTHO05D005829 1.1e-28 132.1 383 27.2
FAN23G2906 Fragaria x ananassa HOM05D004646 ORTHO05D005829 1.2e-27 128.6 106 57.5
arahy.Tifrunner.gnm1.ann1.J8CRVY Arachis hypogaea HOM05D004646 ORTHO05D005829 1.5e-25 121.7 152 42.1
QL03p063036 Quercus lobata HOM05D004646 ORTHO05D005829 8.4e-24 115.9 69 82.6
TPR.G8663 Trifolium pratense HOM05D004646 ORTHO05D005829 7.1e-23 112.8 71 77.5
Ca_27800_v3 Cicer arietinum L. HOM05D004646 ORTHO05D005829 9.2e-23 112.5 67 82.1
PRCOL_00002500 Prasinoderma coloniale HOM05D004646 ORTHO05D005829 2.1e-22 111.3 353 28.9
ECA247G1057 Erigeron canadensis HOM05D004646 ORTHO05D000001 1.0e-21 109.0 69 78.3
RcHm_v2.0_Chr4g0413061 Rosa chinensis HOM05D004646 ORTHO05D005829 8.1e-19 99.4 76 55.3
arahy.Tifrunner.gnm1.ann1.PSIG0Y Arachis hypogaea HOM05D004646 ORTHO05D005829 2.4e-18 97.8 67 70.1
Cre06.g310050 Chlamydomonas reinhardtii HOM05D004646 ORTHO05D005829 2.6e-17 94.4 367 26.4
FAN12G3236 Fragaria x ananassa HOM05D004646 ORTHO05D005829 3.4e-17 94.0 171 43.9
FAN21G2061 Fragaria x ananassa HOM05D004646 ORTHO05D005829 4.4e-17 93.6 172 43.6
FAN04G0237 Fragaria x ananassa HOM05D004646 ORTHO05D005829 2.2e-16 91.3 123 49.6
FAN09G2429 Fragaria x ananassa HOM05D004646 ORTHO05D005829 4.9e-16 90.1 133 47.4
FAN17G1446 Fragaria x ananassa HOM05D004646 ORTHO05D005829 1.1e-15 89.0 133 46.6
ATR0307G135 Amborella trichopoda HOM05D004646 ORTHO05D005829 3.2e-15 87.4 72 59.7
ATR0307G023 Amborella trichopoda HOM05D004646 ORTHO05D005829 1.1e-10 72.4 95 40.0
VMungo0331G0231 Vigna mungo HOM05D004646 ORTHO05D012812 4.5e-09 67.0 45 62.2
DCAR_020292 Daucus carota HOM05D003816 ORTHO05D004410 2.2e-08 64.7 342 24.6
MD09G1249200 Malus domestica HOM05D005443 ORTHO05D009021 3.8e-08 63.9 216 30.1
PRCOL_00000126 Prasinoderma coloniale HOM05D003816 ORTHO05D004410 6.4e-08 63.2 154 31.2
unitig_0.g2849 Utricularia gibba HOM05D003816 ORTHO05D004410 2.1e-06 58.2 132 31.1
ClCG01G000780 Citrullus lanatus HOM05D003816 ORTHO05D004410 2.7e-06 57.8 151 28.5
Ciclev10017817m.g Citrus clementina HOM05D005443 ORTHO05D009021 2.7e-06 57.8 97 38.1
MSTRG.11945 Avicennia marina HOM05D003816 ORTHO05D004410 3.5e-06 57.4 151 29.8
Cpa.g.sc122.12 Carica papaya HOM05D003816 ORTHO05D004410 3.5e-06 57.4 137 30.7
AUR62010771 Chenopodium quinoa HOM05D003816 ORTHO05D004410 3.5e-06 57.4 151 28.5
AUR62019773 Chenopodium quinoa HOM05D003816 ORTHO05D004410 3.5e-06 57.4 151 28.5
MELO3C005852.2 Cucumis melo HOM05D003816 ORTHO05D004410 3.5e-06 57.4 151 28.5
CsaV3_5G000910 Cucumis sativus L. HOM05D003816 ORTHO05D004410 3.5e-06 57.4 151 28.5
EL10Ac5g12851 Beta vulgaris HOM05D003816 ORTHO05D004410 4.6e-06 57.0 151 27.8
unitig_88.g27629 Utricularia gibba HOM05D003816 ORTHO05D004410 4.6e-06 57.0 132 29.5
SHI07095 Sapria himalayana HOM05D003816 ORTHO05D004410 6.0e-06 56.6 145 29.0
Sed0004130 Sechium edule HOM05D003816 ORTHO05D004410 6.0e-06 56.6 151 27.8
Ah.12g052090 Amaranthus hybridus HOM05D003816 ORTHO05D004410 7.9e-06 56.2 151 27.8
Migut.A00701 Erythranthe guttata HOM05D003816 ORTHO05D004410 7.9e-06 56.2 132 31.1
MCO02G085 Micromonas commoda HOM05D004646 ORTHO05D269497 7.9e-06 56.2 382 22.5
Nitab4.5_0007898g0030 Nicotiana tabacum HOM05D003816 ORTHO05D004410 7.9e-06 56.2 132 32.6
Sed0000969 Sechium edule HOM05D003816 ORTHO05D004410 7.9e-06 56.2 151 27.8


User provided reference genes

Program Settings