Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0061600 Rhododendron simsii HOM05D005097 ORTHO05D006186 4.8e-85 317.8 157 100.0
CSS0049826 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 4.5e-35 151.8 157 58.0
Dinv34170 Davidia involucrata HOM05D005097 ORTHO05D006186 2.9e-34 149.1 163 57.1
Hma1.2p1_0265F.1_g106660 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 4.0e-31 138.7 162 53.7
CiPaw.06G083100 Carya illinoinensis HOM05D005097 ORTHO05D006186 2.6e-30 136.0 185 50.3
QL03p064734 Quercus lobata HOM05D005097 ORTHO05D006186 8.2e-29 131.0 184 48.4
Cfa009001 Carpinus fangiana HOM05D005097 ORTHO05D006186 4.1e-28 128.6 178 50.0
Haze_12031 Corylus avellana HOM05D005097 ORTHO05D006186 4.1e-28 128.6 181 49.7
Actinidia07840 Actinidia chinensis HOM05D005097 ORTHO05D006186 2.0e-27 126.3 101 64.4
Hma1.2p1_0598F.1_g186730 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 2.7e-27 125.9 172 50.0
TAR629G2181 Trochodendron aralioides HOM05D005097 ORTHO05D006186 1.0e-26 124.0 171 49.7
Cc11_g13240 Coffea canephora HOM05D005097 ORTHO05D006186 6.5e-26 121.3 166 48.2
Prupe.1G272000 Prunus persica HOM05D005097 ORTHO05D006186 5.5e-25 118.2 191 44.0
CSS0023945 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 1.6e-24 116.7 159 49.7
CiPaw.05G137400 Carya illinoinensis HOM05D005097 ORTHO05D006186 3.6e-24 115.5 185 47.0
Gorai.005G140300 Gossypium raimondii HOM05D005097 ORTHO05D006186 8.0e-24 114.4 181 48.6
Gohir.D13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 1.4e-23 113.6 188 43.6
Gorai.013G084000 Gossypium raimondii HOM05D005097 ORTHO05D006186 1.4e-23 113.6 188 43.6
FAN07G0101 Fragaria x ananassa HOM05D005097 ORTHO05D006186 1.8e-23 113.2 168 44.6
Gohir.A03G099800 Gossypium hirsutum HOM05D005097 ORTHO05D006186 1.8e-23 113.2 178 49.4
COL.COLO4_22981 Corchorus olitorius HOM05D005097 ORTHO05D006186 3.0e-23 112.5 182 45.1
Gohir.A13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 4.0e-23 112.1 194 44.3
Cpa.g.c36484 Carica papaya HOM05D005097 ORTHO05D006186 6.8e-23 111.3 172 48.3
Gohir.D02G124700 Gossypium hirsutum HOM05D005097 ORTHO05D006186 8.8e-23 110.9 181 47.0
Atru.chr11.1825 Acer truncatum HOM05D005097 ORTHO05D006186 1.5e-22 110.2 179 46.4
Thecc.02G349700 Theobroma cacao HOM05D005097 ORTHO05D006186 1.5e-22 110.2 194 43.8
FAN17G3076 Fragaria x ananassa HOM05D005097 ORTHO05D006186 3.4e-22 109.0 168 46.4
Duzib251G0564 Durio zibethinus HOM05D005097 ORTHO05D006186 4.4e-22 108.6 186 45.2
CiPaw.05G214900 Carya illinoinensis HOM05D005097 ORTHO05D006186 1.7e-21 106.7 140 48.6
Manes.05G099600 Manihot esculenta HOM05D005097 ORTHO05D006186 2.2e-21 106.3 182 46.2
SalBow2G3468 Salvia bowleyana HOM05D005097 ORTHO05D006186 3.7e-21 105.5 163 42.9
TAR371G0839 Trochodendron aralioides HOM05D005097 ORTHO05D006186 8.3e-21 104.4 159 44.7
Ciclev10032896m.g Citrus clementina HOM05D005097 ORTHO05D006186 1.4e-20 103.6 175 44.6
Oeu013625.1 Olea europaea HOM05D005097 ORTHO05D006186 1.4e-20 103.6 171 42.1
MSTRG.689 Avicennia marina HOM05D005097 ORTHO05D006186 1.8e-20 103.2 186 40.3
FAN22G0952 Fragaria x ananassa HOM05D005097 ORTHO05D006186 1.8e-20 103.2 168 44.0
Lsat_1_v5_gn_3_52761 Lactuca sativa HOM05D005097 ORTHO05D006186 1.8e-20 103.2 163 46.6
MBI05_g00383_MAGBIO Magnolia biondii HOM05D005097 ORTHO05D006186 1.8e-20 103.2 154 48.1
SalBow2G0279 Salvia bowleyana HOM05D005097 ORTHO05D006186 1.8e-20 103.2 163 42.3
Oeu027980.1 Olea europaea HOM05D005097 ORTHO05D006186 2.4e-20 102.8 169 43.8
RcHm_v2.0_Chr4g0440081 Rosa chinensis HOM05D005097 ORTHO05D006186 7.0e-20 101.3 185 42.2
Manes.01G187400 Manihot esculenta HOM05D005097 ORTHO05D006186 2.0e-19 99.8 191 42.9
MSTRG.13412 Avicennia marina HOM05D005097 ORTHO05D006186 2.7e-19 99.4 179 42.5
Phvul.003G067200 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 2.7e-19 99.4 165 44.8
TAR622G0694 Trochodendron aralioides HOM05D005097 ORTHO05D006186 3.5e-19 99.0 165 45.5
Ca_04768_v3 Cicer arietinum L. HOM05D005097 ORTHO05D006186 4.5e-19 98.6 180 41.1
FAN12G0365 Fragaria x ananassa HOM05D005097 ORTHO05D006186 4.5e-19 98.6 171 42.1
MSTRG.7812 Avicennia marina HOM05D005097 ORTHO05D006186 7.7e-19 97.8 196 39.3
MD16G1075200 Malus domestica HOM05D005097 ORTHO05D006186 1.7e-18 96.7 190 40.5
Glyma.01G045200 Glycine max HOM05D005097 ORTHO05D006186 2.3e-18 96.3 172 41.3
Eucgr.G02516 Eucalyptus grandis HOM05D005097 ORTHO05D006186 2.9e-18 95.9 184 42.9
Nn4g23108 Nelumbo nucifera HOM05D005097 ORTHO05D006186 3.8e-18 95.5 169 40.8
Migut.L01312 Erythranthe guttata HOM05D005097 ORTHO05D006186 5.0e-18 95.1 179 42.5
EL10Ac6g13179 Beta vulgaris HOM05D005097 ORTHO05D006186 1.1e-17 94.0 164 46.3
Migut.E00105 Erythranthe guttata HOM05D005097 ORTHO05D006186 1.9e-17 93.2 181 39.8
Lj2g0000799 Lotus japonicus HOM05D005097 ORTHO05D006186 7.2e-17 91.3 172 41.9
Ah.03g135230 Amaranthus hybridus HOM05D005097 ORTHO05D006186 1.2e-16 90.5 170 45.3
Eucgr.G02514 Eucalyptus grandis HOM05D005097 ORTHO05D006186 1.2e-16 90.5 166 44.0
Glyma.08G299000 Glycine max HOM05D005097 ORTHO05D006186 1.2e-16 90.5 180 42.2
Sed0019373 Sechium edule HOM05D005097 ORTHO05D006186 1.6e-16 90.1 153 44.4
Glyma.18G121900 Glycine max HOM05D005097 ORTHO05D006186 2.1e-16 89.7 179 40.8
Peaxi162Scf00541g00067 Petunia axillaris HOM05D005097 ORTHO05D006186 2.1e-16 89.7 179 40.2
Thhalv10019695m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 2.8e-16 89.4 172 40.1
Nitab4.5_0002151g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 2.8e-16 89.4 167 44.9
Oeu045409.1 Olea europaea HOM05D005097 ORTHO05D006186 3.6e-16 89.0 181 38.1
Oeu054897.1 Olea europaea HOM05D005097 ORTHO05D006186 4.7e-16 88.6 177 39.5
Solyc05g007240.1 Solanum lycopersicum HOM05D005097 ORTHO05D006186 6.1e-16 88.2 176 43.2
Sopen05g003200 Solanum pennellii HOM05D005097 ORTHO05D006186 6.1e-16 88.2 174 43.1
VMungo1215G0414 Vigna mungo HOM05D005097 ORTHO05D006186 6.1e-16 88.2 185 41.1
Aqoxy3G03339 Aquilegia oxysepala HOM05D005097 ORTHO05D006186 8.0e-16 87.8 127 42.5
Sc04g0008280 Simmondsia chinensis HOM05D005097 ORTHO05D006186 1.8e-15 86.7 150 46.7
MSTRG.2351 Avicennia marina HOM05D005097 ORTHO05D006186 3.0e-15 85.9 156 40.4
CARHR025020 Cardamine hirsuta HOM05D005097 ORTHO05D006186 4.0e-15 85.5 168 41.1
DCAR_007146 Daucus carota HOM05D005097 ORTHO05D006186 5.2e-15 85.1 187 40.6
MD13G1074000 Malus domestica HOM05D005097 ORTHO05D006186 5.2e-15 85.1 129 41.9
SGA_v2.0_scaffold389G50580 Striga asiatica HOM05D005097 ORTHO05D006186 5.2e-15 85.1 171 38.6
PGSC0003DMG400023051 Solanum tuberosum HOM05D005097 ORTHO05D006186 8.9e-15 84.3 176 41.5
VMungo0251G1975 Vigna mungo HOM05D005097 ORTHO05D006186 8.9e-15 84.3 173 39.9
C06p43570 Brassica napus HOM05D005097 ORTHO05D006186 1.5e-14 83.6 179 37.4
CiPaw.13G150200 Carya illinoinensis HOM05D005097 ORTHO05D006186 1.5e-14 83.6 132 42.4
Eucgr.B03425 Eucalyptus grandis HOM05D005097 ORTHO05D006186 2.0e-14 83.2 167 38.9
A07p36180 Brassica napus HOM05D005097 ORTHO05D006186 4.4e-14 82.0 180 36.7
BraA07t31193Z Brassica rapa HOM05D005097 ORTHO05D006186 4.4e-14 82.0 180 36.7
BcaC08g46423 Brassica carinata HOM05D005097 ORTHO05D006186 9.8e-14 80.9 179 36.3
C06p36640 Brassica napus HOM05D005097 ORTHO05D006186 2.2e-13 79.7 176 36.9
BcaB03g14754 Brassica carinata HOM05D005097 ORTHO05D006186 2.8e-13 79.3 179 35.8
A08p27630 Brassica napus HOM05D005097 ORTHO05D006186 2.8e-13 79.3 172 39.0
BraA08t34700Z Brassica rapa HOM05D005097 ORTHO05D006186 2.8e-13 79.3 172 39.0
Phvul.002G088000 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 2.8e-13 79.3 185 37.8
PGR102G3149 Punica granatum HOM05D005097 ORTHO05D006186 3.7e-13 79.0 119 43.7
BcaC08g45866 Brassica carinata HOM05D005097 ORTHO05D006186 4.9e-13 78.6 176 36.9
A07p31380 Brassica napus HOM05D005097 ORTHO05D006186 4.9e-13 78.6 176 36.9
BolC6t38773H Brassica oleracea HOM05D005097 ORTHO05D006186 4.9e-13 78.6 176 36.9
BolC6t39429H Brassica oleracea HOM05D005097 ORTHO05D006186 4.9e-13 78.6 180 35.0
BraA07t30773Z Brassica rapa HOM05D005097 ORTHO05D006186 4.9e-13 78.6 176 36.9
Lsat_1_v5_gn_4_9981 Lactuca sativa HOM05D005097 ORTHO05D006186 4.9e-13 78.6 166 39.2
Nitab4.5_0007561g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 4.9e-13 78.6 179 44.1
BcaB05g24483 Brassica carinata HOM05D005097 ORTHO05D006186 6.3e-13 78.2 169 39.1
ClCG05G024410 Citrullus lanatus HOM05D005097 ORTHO05D006186 6.3e-13 78.2 176 39.2
THA.LOC104822921 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 6.3e-13 78.2 148 38.5
BcaB03g15503 Brassica carinata HOM05D005097 ORTHO05D006186 8.3e-13 77.8 176 36.4
BcaC03g15115 Brassica carinata HOM05D005097 ORTHO05D006186 8.3e-13 77.8 178 37.1
BolC2t08749H Brassica oleracea HOM05D005097 ORTHO05D006186 8.3e-13 77.8 178 37.1
Sp1g21860 Schrenkiella parvula HOM05D005097 ORTHO05D006186 8.3e-13 77.8 171 40.9
BcaC07g39258 Brassica carinata HOM05D005097 ORTHO05D006186 1.4e-12 77.0 175 38.3
C08p22680 Brassica napus HOM05D005097 ORTHO05D006186 1.4e-12 77.0 175 38.3
BolC8t49906H Brassica oleracea HOM05D005097 ORTHO05D006186 1.4e-12 77.0 175 38.3
Thhalv10008900m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 1.4e-12 77.0 173 38.2
Dinv16629 Davidia involucrata HOM05D001598 ORTHO05D002757 1.8e-12 76.6 175 37.1
Nn3g17188 Nelumbo nucifera HOM05D005097 ORTHO05D006186 1.8e-12 76.6 172 37.2
THA.LOC104822110 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 1.8e-12 76.6 154 39.6
ATR0564G527 Amborella trichopoda HOM05D005097 ORTHO05D006186 2.4e-12 76.3 162 38.3
A02p16130 Brassica napus HOM05D005097 ORTHO05D006186 2.4e-12 76.3 178 37.6
BraA02t06672Z Brassica rapa HOM05D005097 ORTHO05D006186 2.4e-12 76.3 178 37.6
ECA234G2746 Erigeron canadensis HOM05D005097 ORTHO05D006186 1.2e-11 73.9 162 40.1
PSO832G2020 Papaver somniferum HOM05D005097 ORTHO05D006186 1.6e-11 73.6 194 36.6
BcaB03g12015 Brassica carinata HOM05D005097 ORTHO05D006186 2.0e-11 73.2 165 38.2
Psat2g121760 Pisum sativum HOM05D005097 ORTHO05D006186 2.0e-11 73.2 183 37.2
Sp5g24880 Schrenkiella parvula HOM05D005097 ORTHO05D006186 3.5e-11 72.4 172 35.5
unitig_26.g10306 Utricularia gibba HOM05D005097 ORTHO05D006186 3.5e-11 72.4 144 42.4
Ah.02g131220 Amaranthus hybridus HOM05D005097 ORTHO05D006186 4.5e-11 72.0 163 41.7
PSO063G6767 Papaver somniferum HOM05D005097 ORTHO05D006186 4.5e-11 72.0 148 39.2
AL2G28940 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 5.9e-11 71.6 144 35.4
C02p26790 Brassica napus HOM05D005097 ORTHO05D006186 5.9e-11 71.6 178 36.5
Carub.0001s2406 Capsella rubella HOM05D005097 ORTHO05D006186 5.9e-11 71.6 178 38.2
AT1G26920 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 7.8e-11 71.2 117 41.0
Aa31LG7G8220 Aethionema arabicum HOM05D005097 ORTHO05D006186 1.0e-10 70.9 174 36.2
SalBow8G4444 Salvia bowleyana HOM05D005097 ORTHO05D006186 1.0e-10 70.9 161 37.9
DCAR_027404 Daucus carota HOM05D005097 ORTHO05D006186 1.7e-10 70.1 170 38.2
A09p40330 Brassica napus HOM05D005097 ORTHO05D006186 2.3e-10 69.7 174 36.2
BraA09t39531Z Brassica rapa HOM05D005097 ORTHO05D006186 2.3e-10 69.7 174 36.2
PGR119G1789 Punica granatum HOM05D005097 ORTHO05D006186 6.6e-10 68.2 163 39.3
BcaC05g26373 Brassica carinata HOM05D005097 ORTHO05D006186 8.6e-10 67.8 174 36.2
BolC5t31142H Brassica oleracea HOM05D005097 ORTHO05D006186 8.6e-10 67.8 174 36.2
unitig_747.g21176 Utricularia gibba HOM05D005097 ORTHO05D006186 8.6e-10 67.8 163 37.4
Carub.0002s1644 Capsella rubella HOM05D005097 ORTHO05D006186 3.3e-09 65.9 80 46.2
AL1G38630 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 4.3e-09 65.5 69 55.1
CARHR062830 Cardamine hirsuta HOM05D005097 ORTHO05D006186 5.6e-09 65.1 121 36.4
MELO3C012082.2 Cucumis melo HOM05D005097 ORTHO05D006186 7.3e-09 64.7 180 37.2
AUR62028807 Chenopodium quinoa HOM05D005097 ORTHO05D006186 1.6e-08 63.5 169 37.3
Aa31LG4G11040 Aethionema arabicum HOM05D005097 ORTHO05D006186 3.6e-08 62.4 153 34.0
AT1G69760 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 3.6e-08 62.4 79 46.8
unitig_8.g3466 Utricularia gibba HOM05D005097 ORTHO05D006186 1.4e-07 60.5 141 34.0


User provided reference genes

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