Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0057400 Rhododendron simsii HOM05D004218 ORTHO05D004938 3.5e-197 691.4 349 100.0
vmacro01228 Vaccinium macrocarpon HOM05D004218 ORTHO05D004938 5.1e-164 581.3 375 81.3
CSS0011407 Camellia sinensis var. sinensis HOM05D004218 ORTHO05D004938 2.4e-161 572.4 347 84.1
Actinidia31179 Actinidia chinensis HOM05D004218 ORTHO05D004938 3.2e-158 562.0 345 82.6
Lj6A794T99 Lonicera japonica HOM05D004218 ORTHO05D004938 5.1e-156 554.7 346 81.2
Hma1.2p1_1545F.1_g289920 Hydrangea macrophylla HOM05D004218 ORTHO05D004938 2.4e-153 545.8 347 79.8
Cfa009032 Carpinus fangiana HOM05D004218 ORTHO05D004938 6.9e-153 544.3 347 79.8
QL03p065637 Quercus lobata HOM05D004218 ORTHO05D004938 9.4e-150 533.9 345 79.1
Dinv34202 Davidia involucrata HOM05D004218 ORTHO05D004938 2.7e-149 532.3 322 83.5
TAR374G0431 Trochodendron aralioides HOM05D004218 ORTHO05D004938 4.7e-149 531.6 347 78.4
GSVIVG01020072001 Vitis vinifera HOM05D004218 ORTHO05D004938 2.6e-147 525.8 347 77.8
Nn3g17132 Nelumbo nucifera HOM05D004218 ORTHO05D004938 7.4e-147 524.2 347 78.1
Prupe.1G268000 Prunus persica HOM05D004218 ORTHO05D004938 7.4e-147 524.2 344 77.6
Ciclev10031724m.g Citrus clementina HOM05D004218 ORTHO05D004938 2.8e-146 522.3 348 77.0
MD16G1078500 Malus domestica HOM05D004218 ORTHO05D004938 1.8e-145 519.6 345 75.9
Eucgr.G02550 Eucalyptus grandis HOM05D004218 ORTHO05D004938 4.5e-144 515.0 347 75.5
Cpa.g.sc5.274 Carica papaya HOM05D004218 ORTHO05D004938 1.0e-143 513.8 347 76.9
Thecc.02G354900 Theobroma cacao HOM05D004218 ORTHO05D004938 1.3e-143 513.5 343 76.7
COL.COLO4_07925 Corchorus olitorius HOM05D004218 ORTHO05D004938 8.5e-143 510.8 347 76.4
Duzib248G0205 Durio zibethinus HOM05D004218 ORTHO05D004938 4.2e-142 508.4 317 79.8
MSTRG.7824 Avicennia marina HOM05D004218 ORTHO05D004938 1.0e-140 503.8 344 73.3
Dinv24956 Davidia involucrata HOM05D004218 ORTHO05D004938 1.8e-140 503.1 315 81.3
Gohir.D13G068200 Gossypium hirsutum HOM05D004218 ORTHO05D004938 2.3e-140 502.7 339 76.4
RcHm_v2.0_Chr4g0440591 Rosa chinensis HOM05D004218 ORTHO05D004938 3.0e-140 502.3 344 75.0
TWI18G0549 Tripterygium wilfordii HOM05D004218 ORTHO05D004938 3.0e-140 502.3 342 74.9
CAN.G279.12 Capsicum annuum HOM05D004218 ORTHO05D004938 8.8e-140 500.7 340 73.8
Sopen05g003030 Solanum pennellii HOM05D004218 ORTHO05D004938 2.6e-139 499.2 340 73.8
Lj2g0000105 Lotus japonicus HOM05D004218 ORTHO05D004938 4.4e-139 498.4 334 74.6
CANSAT64G2557 Cannabis sativa HOM05D004218 ORTHO05D004938 5.7e-139 498.0 338 74.9
Manes.05G096800 Manihot esculenta HOM05D004218 ORTHO05D004938 7.5e-139 497.7 338 75.7
Cc11_g13440 Coffea canephora HOM05D004218 ORTHO05D004938 9.7e-139 497.3 339 74.6
Gorai.013G077700 Gossypium raimondii HOM05D004218 ORTHO05D004938 9.7e-139 497.3 339 75.8
PGSC0003DMG400017643 Solanum tuberosum HOM05D004218 ORTHO05D004938 9.7e-139 497.3 343 73.5
FAN22G1204 Fragaria x ananassa HOM05D004218 ORTHO05D004938 2.2e-138 496.1 336 76.2
Solyc05g007060.4 Solanum lycopersicum HOM05D004218 ORTHO05D004938 2.2e-138 496.1 343 73.2
DCAR_027386 Daucus carota HOM05D004218 ORTHO05D004938 2.8e-138 495.7 334 74.3
Migut.L01342 Erythranthe guttata HOM05D004218 ORTHO05D004938 3.7e-138 495.4 344 71.8
Phvul.002G066300 Phaseolus vulgaris HOM05D004218 ORTHO05D004938 1.2e-136 490.3 344 72.1
FAN12G1121 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.6e-136 490.0 351 73.2
Hund25269 Selenicereus undatus HOM05D004218 ORTHO05D004938 1.6e-136 490.0 348 71.3
CiPaw.05G139700 Carya illinoinensis HOM05D004218 ORTHO05D004938 2.2e-135 486.1 304 80.3
FAN17G0090 Fragaria x ananassa HOM05D004218 ORTHO05D004938 2.2e-135 486.1 344 73.8
SGA_v2.0_scaffold302G47864 Striga asiatica HOM05D004218 ORTHO05D004938 2.2e-135 486.1 347 71.5
PGR119G2468 Punica granatum HOM05D004218 ORTHO05D004938 5.0e-135 485.0 340 73.8
Lalb_Chr17g0340391 Lupinus albus HOM05D004218 ORTHO05D004938 8.5e-135 484.2 335 72.8
VMungo1215G2729 Vigna mungo HOM05D004218 ORTHO05D004938 1.5e-134 483.4 344 70.3
Aqoxy3G03270 Aquilegia oxysepala HOM05D004218 ORTHO05D004938 1.9e-134 483.0 341 72.1
CsaV3_6G036150 Cucumis sativus L. HOM05D004218 ORTHO05D004938 2.5e-134 482.6 335 73.1
Medtr5g038460 Medicago truncatula HOM05D004218 ORTHO05D004938 3.2e-134 482.3 345 70.1
Ca_04743_v3 Cicer arietinum L. HOM05D004218 ORTHO05D004938 2.7e-133 479.2 318 75.5
TPR.G13761 Trifolium pratense HOM05D004218 ORTHO05D004938 3.6e-133 478.8 333 71.2
Glyma.02G021600 Glycine max HOM05D004218 ORTHO05D004938 4.7e-133 478.4 344 70.3
PSO478G0406 Papaver somniferum HOM05D004218 ORTHO05D004938 1.8e-132 476.5 347 71.8
Sed0012992 Sechium edule HOM05D004218 ORTHO05D004938 1.8e-132 476.5 341 72.4
Gohir.A13G052700 Gossypium hirsutum HOM05D004218 ORTHO05D004938 2.3e-132 476.1 357 70.6
Lsat_1_v5_gn_8_54121 Lactuca sativa HOM05D004218 ORTHO05D004938 8.8e-132 474.2 334 71.9
CARHR006730 Cardamine hirsuta HOM05D004218 ORTHO05D004938 1.5e-131 473.4 346 69.4
AL1G17150 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 2.0e-131 473.0 346 69.1
PSO017G6443 Papaver somniferum HOM05D004218 ORTHO05D004938 3.4e-131 472.2 347 70.9
Carub.0001s0633 Capsella rubella HOM05D004218 ORTHO05D004938 5.7e-131 471.5 345 68.7
Thhalv10007958m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 5.7e-131 471.5 336 69.9
Potri.008G194800 Populus trichocarpa HOM05D004218 ORTHO05D004938 9.8e-131 470.7 350 71.4
Sabra08G0148000 Salix brachista HOM05D004218 ORTHO05D004938 1.3e-130 470.3 350 71.4
AT1G07040 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 1.7e-130 469.9 346 67.9
MELO3C026498.2 Cucumis melo HOM05D004218 ORTHO05D004938 2.2e-130 469.5 344 70.6
Peaxi162Scf00209g00319 Petunia axillaris HOM05D004218 ORTHO05D004938 6.3e-130 468.0 316 75.3
Aa31LG7G8130 Aethionema arabicum HOM05D004218 ORTHO05D004938 8.3e-130 467.6 343 68.5
BolC5t29284H Brassica oleracea HOM05D004218 ORTHO05D004938 3.1e-129 465.7 350 67.1
Sp1g05760 Schrenkiella parvula HOM05D004218 ORTHO05D004938 5.4e-129 464.9 341 68.3
AUR62026251 Chenopodium quinoa HOM05D004218 ORTHO05D004938 7.0e-129 464.5 350 68.9
Psat0s3244g0040 Pisum sativum HOM05D004218 ORTHO05D004938 9.1e-129 464.2 340 69.1
THA.LOC104822930 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 1.6e-128 463.4 346 67.9
Sc14g0008380 Simmondsia chinensis HOM05D004218 ORTHO05D004938 4.5e-128 461.8 349 68.8
A10p05580 Brassica napus HOM05D004218 ORTHO05D004938 7.7e-128 461.1 351 67.5
BraA10t42819Z Brassica rapa HOM05D004218 ORTHO05D004938 7.7e-128 461.1 351 67.5
ATR1120G161 Amborella trichopoda HOM05D004218 ORTHO05D004938 3.2e-126 455.7 339 68.7
HanXRQChr08g0209171 Helianthus annuus HOM05D004218 ORTHO05D004938 9.5e-126 454.1 313 71.6
arahy.Tifrunner.gnm1.ann1.VAP5EU Arachis hypogaea HOM05D004218 ORTHO05D004938 1.2e-125 453.8 346 68.2
ClCG08G009010 Citrullus lanatus HOM05D004218 ORTHO05D004938 3.6e-125 452.2 417 59.5
unitig_749.g13251 Utricularia gibba HOM05D004218 ORTHO05D004938 1.4e-124 450.3 346 67.3
Zm00001eb046510 Zea mays HOM05D004218 ORTHO05D004938 1.8e-124 449.9 349 65.6
Ah.01g005530 Amaranthus hybridus HOM05D004218 ORTHO05D004938 4.0e-124 448.7 317 72.2
EL10Ac6g13149 Beta vulgaris HOM05D004218 ORTHO05D004938 4.0e-124 448.7 338 69.5
Os10g0463800 Oryza sativa ssp. japonica HOM05D004218 ORTHO05D004938 2.6e-123 446.0 341 66.3
arahy.Tifrunner.gnm1.ann1.08CHDU Arachis hypogaea HOM05D004218 ORTHO05D004938 4.4e-123 445.3 346 66.8
ECA236G4940 Erigeron canadensis HOM05D004218 ORTHO05D004938 1.8e-121 439.9 326 70.6
CDE06G2220 Ceratophyllum demersum HOM05D004218 ORTHO05D004938 1.1e-118 430.6 334 66.5
HPP92_000630 Vanilla planifolia HOM05D004218 ORTHO05D004938 1.9e-118 429.9 344 63.1
Nitab4.5_0009649g0010 Nicotiana tabacum HOM05D004218 ORTHO05D004938 4.3e-118 428.7 340 66.8
C05p05130 Brassica napus HOM05D004218 ORTHO05D004938 1.7e-114 416.8 320 66.2
Nitab4.5_0009146g0020 Nicotiana tabacum HOM05D004218 ORTHO05D004938 7.0e-113 411.4 340 65.3
FAN07G0325 Fragaria x ananassa HOM05D004218 ORTHO05D004938 3.5e-112 409.1 266 78.6
SalBow2G1790 Salvia bowleyana HOM05D004218 ORTHO05D004938 3.9e-111 405.6 285 70.5
SalBow2G2061 Salvia bowleyana HOM05D004218 ORTHO05D004938 3.9e-111 405.6 285 70.5
SEGI_07096 Sequoiadendron giganteum HOM05D004218 ORTHO05D004938 5.2e-108 395.2 348 58.9
FvH4_4g31940 Fragaria vesca HOM05D004218 ORTHO05D004938 1.0e-103 380.9 255 74.5
Atru.chr11.1849 Acer truncatum HOM05D004218 ORTHO05D004938 1.3e-103 380.6 248 77.0
AUR62026441 Chenopodium quinoa HOM05D004218 ORTHO05D004938 4.1e-97 359.0 242 74.4
Pp3c14_9960 Physcomitrium patens HOM05D004218 ORTHO05D004938 3.0e-95 352.8 321 57.3
AagrBONN_evm.TU.Sc2ySwM_362.1084 Anthoceros agrestis HOM05D004218 ORTHO05D004938 1.2e-93 347.4 298 57.7
BraA07t29096Z Brassica rapa HOM05D004218 ORTHO05D004938 8.1e-93 344.7 310 54.5
Thhalv10008275m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 4.0e-92 342.4 311 54.0
Mapoly0004s0239 Marchantia polymorpha HOM05D004218 ORTHO05D004938 4.0e-92 342.4 321 54.8
A07p13260 Brassica napus HOM05D004218 ORTHO05D004938 2.6e-91 339.7 310 53.9
BcaB03g14100 Brassica carinata HOM05D004218 ORTHO05D004938 7.6e-91 338.2 305 53.1
Psat0s917g0040 Pisum sativum HOM05D004218 ORTHO05D004938 2.9e-90 336.3 263 64.6
SMO118G0107 Selaginella moellendorffii HOM05D004218 ORTHO05D004938 1.4e-89 334.0 303 57.4
BcaB06g28798 Brassica carinata HOM05D004218 ORTHO05D004938 3.2e-89 332.8 311 53.4
BolC4t27868H Brassica oleracea HOM05D004218 ORTHO05D004938 4.1e-89 332.4 311 53.7
AL1G38500 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.6e-88 330.5 311 53.7
Thhalv10023603m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.7e-87 327.0 310 53.2
BcaC06g35101 Brassica carinata HOM05D004218 ORTHO05D004938 3.0e-87 326.2 311 51.8
A07p13210 Brassica napus HOM05D004218 ORTHO05D004938 3.0e-87 326.2 311 51.8
AL1G38480 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 5.1e-87 325.5 311 52.7
Thhalv10007811m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 5.1e-87 325.5 305 51.5
AT1G27020 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 1.1e-86 324.3 311 53.7
AL1G38490 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.5e-86 323.9 311 51.1
BraA07t29093Z Brassica rapa HOM05D004218 ORTHO05D004938 1.5e-86 323.9 311 51.4
Thhalv10008276m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 3.3e-86 322.8 309 52.1
BcaB03g11982 Brassica carinata HOM05D004218 ORTHO05D004938 7.3e-86 321.6 304 52.3
CARHR024900 Cardamine hirsuta HOM05D004218 ORTHO05D004938 7.3e-86 321.6 311 52.4
AT1G27030 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 1.2e-85 320.9 311 51.4
CARHR024890 Cardamine hirsuta HOM05D004218 ORTHO05D004938 1.2e-85 320.9 305 50.5
BcaC06g35098 Brassica carinata HOM05D004218 ORTHO05D004938 2.1e-85 320.1 286 54.5
THA.LOC104822097 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 2.8e-85 319.7 322 50.9
BraA08t34706Z Brassica rapa HOM05D004218 ORTHO05D004938 4.7e-85 318.9 311 51.4
Sp1g21780 Schrenkiella parvula HOM05D004218 ORTHO05D004938 1.4e-84 317.4 311 51.4
Sp1g21785 Schrenkiella parvula HOM05D004218 ORTHO05D004938 5.2e-84 315.5 311 51.8
A07p13220 Brassica napus HOM05D004218 ORTHO05D004938 9.0e-84 314.7 311 51.1
C07p19810 Brassica napus HOM05D004218 ORTHO05D004938 1.2e-83 314.3 311 51.1
BolC7t42494H Brassica oleracea HOM05D004218 ORTHO05D004938 1.2e-83 314.3 311 51.1
Sp1g21770 Schrenkiella parvula HOM05D004218 ORTHO05D004938 1.2e-83 314.3 304 51.6
BcaB03g14099 Brassica carinata HOM05D004218 ORTHO05D004938 2.6e-83 313.2 316 50.3
Thhalv10000255m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 2.6e-83 313.2 311 52.1
A08p27710 Brassica napus HOM05D004218 ORTHO05D004938 7.6e-83 311.6 311 50.2
Carub.0001s2395 Capsella rubella HOM05D004218 ORTHO05D004938 7.6e-83 311.6 305 50.2
BraA09t39542Z Brassica rapa HOM05D004218 ORTHO05D004938 8.4e-82 308.1 311 50.8
A09p40450 Brassica napus HOM05D004218 ORTHO05D004938 1.4e-81 307.4 311 50.5
Haze_12061 Corylus avellana HOM05D004218 ORTHO05D004938 6.0e-80 302.0 194 77.3
Carub.0001s2394 Capsella rubella HOM05D004218 ORTHO05D004938 3.9e-79 299.3 313 47.3
BraA07t29094Z Brassica rapa HOM05D004218 ORTHO05D004938 6.6e-79 298.5 307 48.9
BcaC07g39255 Brassica carinata HOM05D004218 ORTHO05D004938 1.1e-76 291.2 309 48.2
AL1G38470 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 2.0e-75 287.0 289 49.8
BcaC05g26350 Brassica carinata HOM05D004218 ORTHO05D004938 7.9e-72 275.0 311 48.2
BolC5t31091H Brassica oleracea HOM05D004218 ORTHO05D004938 6.7e-71 271.9 297 48.5
C05p23720 Brassica napus HOM05D004218 ORTHO05D004938 7.4e-70 268.5 290 48.6
C08p22580 Brassica napus HOM05D004218 ORTHO05D004938 3.1e-68 263.1 362 40.1
Glyma.01G042500 Glycine max HOM05D004218 ORTHO05D004938 1.5e-67 260.8 305 48.5
Lj6A794G97 Lonicera japonica HOM05D004218 ORTHO05D004938 6.0e-64 248.8 234 62.0
BcaC06g35100 Brassica carinata HOM05D004218 ORTHO05D004938 1.5e-62 244.2 258 48.8
BcaC05g24668 Brassica carinata HOM05D004218 ORTHO05D002942 6.7e-55 218.8 214 56.1
C07p19800 Brassica napus HOM05D004218 ORTHO05D004938 1.5e-54 217.6 199 53.8
BolC7t42493H Brassica oleracea HOM05D004218 ORTHO05D004938 1.5e-54 217.6 199 53.8
AL8G21080 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 2.5e-54 216.9 233 49.4
PRCOL_00000833 Prasinoderma coloniale HOM05D004218 ORTHO05D004938 7.4e-54 215.3 311 38.9
Cre07.g342800 Chlamydomonas reinhardtii HOM05D004218 ORTHO05D004938 1.1e-46 191.4 329 36.5
BolC7t42500H Brassica oleracea HOM05D004218 ORTHO05D004938 1.5e-38 164.5 142 52.1
BolC8t49896H Brassica oleracea HOM05D004218 ORTHO05D004938 6.3e-37 159.1 148 52.7
C07p19850 Brassica napus HOM05D004218 ORTHO05D004938 1.1e-36 158.3 142 50.7
BolC7t42503H Brassica oleracea HOM05D004218 ORTHO05D004938 1.1e-36 158.3 142 50.7
AL8G21090 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.7e-34 151.0 311 32.2
AUR62026443 Chenopodium quinoa HOM05D004218 ORTHO05D004938 7.2e-33 145.6 90 80.0
C07p19830 Brassica napus HOM05D004218 ORTHO05D004938 5.2e-31 139.4 154 50.6
C07p19840 Brassica napus HOM05D004218 ORTHO05D004938 1.3e-29 134.8 125 48.8
MCO10G201 Micromonas commoda HOM05D004218 ORTHO05D004938 5.2e-23 112.8 298 29.5
CAN.G683.6 Capsicum annuum HOM05D004218 ORTHO05D004938 6.3e-21 105.9 108 56.5
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 9.8e-14 82.0 58 70.7


User provided reference genes

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