Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0055400 Rhododendron simsii HOM05D001576 ORTHO05D000401 1.5e-162 576.2 312 100.0
Rhsim03G0149900 Rhododendron simsii HOM05D001576 ORTHO05D000401 8.3e-89 331.3 267 67.8
Rhsim01G0041500 Rhododendron simsii HOM05D001576 ORTHO05D000401 2.1e-68 263.5 266 58.6
Rhsim07G0047500 Rhododendron simsii HOM05D009487 ORTHO05D011434 4.3e-45 186.0 231 53.7
Rhsim12G0056400 Rhododendron simsii HOM05D000012 ORTHO05D000856 5.7e-13 79.3 47 85.1
Rhsim12G0056000 Rhododendron simsii HOM05D000012 ORTHO05D000856 9.7e-13 78.6 47 85.1
FvH4_7g13271 Fragaria vesca HOM05D001576 ORTHO05D000401 2.2e-12 77.4 257 27.2
FvH4_3g29014 Fragaria vesca HOM05D001576 ORTHO05D000401 1.4e-11 74.7 196 29.6
vmacro01226 Vaccinium macrocarpon HOM05D000012 ORTHO05D000856 1.8e-11 74.3 47 78.7
SGA_v2.0_scaffold234G43617 Striga asiatica HOM05D008413 ORTHO05D000401 6.9e-11 72.4 256 25.8
SGA_v2.0_scaffold208G41998 Striga asiatica HOM05D008413 ORTHO05D000401 2.6e-10 70.5 264 27.7
PSO541G5389 Papaver somniferum HOM05D008413 ORTHO05D000401 5.9e-10 69.3 306 24.2
PSO675G5967 Papaver somniferum HOM05D008413 ORTHO05D000401 1.7e-09 67.8 264 23.9
Atru.chr1.2141 Acer truncatum HOM05D008413 ORTHO05D000401 2.9e-09 67.0 215 27.4
CiPaw.01G092600 Carya illinoinensis HOM05D001576 ORTHO05D000401 2.9e-09 67.0 205 27.3
PSO478G0274 Papaver somniferum HOM05D008413 ORTHO05D000401 2.9e-09 67.0 306 24.8
CiPaw.07G048000 Carya illinoinensis HOM05D001576 ORTHO05D000401 5.0e-09 66.2 194 28.4
Eucgr.B03404 Eucalyptus grandis HOM05D000012 ORTHO05D000856 6.5e-09 65.9 47 61.7
QL11p028487 Quercus lobata HOM05D001576 ORTHO05D000401 6.5e-09 65.9 198 28.8
CiPaw.01G283500 Carya illinoinensis HOM05D001576 ORTHO05D000401 8.5e-09 65.5 194 28.4
CiPaw.11G197100 Carya illinoinensis HOM05D001576 ORTHO05D000401 8.5e-09 65.5 194 28.4
CiPaw.14G108500 Carya illinoinensis HOM05D001576 ORTHO05D000401 8.5e-09 65.5 194 28.4
Os06g0635500 Oryza sativa ssp. japonica HOM05D001576 ORTHO05D000401 8.5e-09 65.5 194 30.9
CiPaw.03G043000 Carya illinoinensis HOM05D001576 ORTHO05D000401 1.4e-08 64.7 194 28.9
CiPaw.07G052000 Carya illinoinensis HOM05D001576 ORTHO05D000401 1.4e-08 64.7 194 28.9
CiPaw.08G044500 Carya illinoinensis HOM05D001576 ORTHO05D000401 1.4e-08 64.7 194 28.9
CiPaw.10G012800 Carya illinoinensis HOM05D001576 ORTHO05D000401 1.4e-08 64.7 194 28.9
CiPaw.15G027200 Carya illinoinensis HOM05D001576 ORTHO05D000401 1.4e-08 64.7 196 29.1
Haze_12077 Corylus avellana HOM05D002100 ORTHO05D002310 1.4e-08 64.7 47 61.7
QL09p040841 Quercus lobata HOM05D001576 ORTHO05D000401 1.9e-08 64.3 213 28.2
CiPaw.14G029000 Carya illinoinensis HOM05D001576 ORTHO05D000401 2.5e-08 63.9 194 28.4
QL04p003192 Quercus lobata HOM05D001576 ORTHO05D000401 2.5e-08 63.9 191 30.9
TWI23G0007 Tripterygium wilfordii HOM05D001576 ORTHO05D000401 2.5e-08 63.9 230 34.3
TWI34G0641 Tripterygium wilfordii HOM05D001576 ORTHO05D000401 3.2e-08 63.5 230 34.3
Atru.chr1.1934 Acer truncatum HOM05D008413 ORTHO05D000401 5.5e-08 62.8 217 27.6
CiPaw.02G050500 Carya illinoinensis HOM05D001576 ORTHO05D000401 5.5e-08 62.8 201 25.4
CiPaw.08G115400 Carya illinoinensis HOM05D001576 ORTHO05D000401 5.5e-08 62.8 102 32.4
CiPaw.09G172800 Carya illinoinensis HOM05D001576 ORTHO05D000401 5.5e-08 62.8 195 27.7
CiPaw.14G032000 Carya illinoinensis HOM05D001576 ORTHO05D000401 7.2e-08 62.4 195 27.2
Hma1.2p1_0324F.1_g125640 Hydrangea macrophylla HOM05D001576 ORTHO05D000401 7.2e-08 62.4 248 25.4
PSO017G6541 Papaver somniferum HOM05D008413 ORTHO05D000401 7.2e-08 62.4 188 25.5
QL04p000022 Quercus lobata HOM05D001576 ORTHO05D000401 7.2e-08 62.4 191 30.4
CSS0000195 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 9.3e-08 62.0 210 27.6
CSS0003077 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 9.3e-08 62.0 210 27.6
CSS0009093 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 9.3e-08 62.0 210 27.6
CSS0019281 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 9.3e-08 62.0 210 27.6
CSS0021750 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 9.3e-08 62.0 210 27.6
CSS0039293 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 9.3e-08 62.0 210 27.6
CSS0042573 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 9.3e-08 62.0 210 27.6
vmacro07382 Vaccinium macrocarpon HOM05D009738 ORTHO05D011821 9.3e-08 62.0 197 27.9
Aqoxy1G02949 Aquilegia oxysepala HOM05D001576 ORTHO05D000401 1.2e-07 61.6 254 31.5
CiPaw.02G091600 Carya illinoinensis HOM05D001576 ORTHO05D000401 1.2e-07 61.6 186 28.5
SGA_v2.0_scaffold85G26643 Striga asiatica HOM05D008413 ORTHO05D000401 1.2e-07 61.6 266 25.2
CSS0012008 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 1.6e-07 61.2 268 32.1
CSS0041711 Camellia sinensis var. sinensis HOM05D000012 ORTHO05D000856 1.6e-07 61.2 47 61.7
CiPaw.01G146900 Carya illinoinensis HOM05D001576 ORTHO05D000401 1.6e-07 61.2 102 31.4
CiPaw.14G031000 Carya illinoinensis HOM05D001576 ORTHO05D000401 1.6e-07 61.2 194 25.8
CSS0004495 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 2.1e-07 60.8 141 31.9
PSO384G2190 Papaver somniferum HOM05D008413 ORTHO05D000401 2.7e-07 60.5 255 29.8
QL03p006855 Quercus lobata HOM05D001576 ORTHO05D000401 2.7e-07 60.5 116 30.2
QL03p071586 Quercus lobata HOM05D001576 ORTHO05D000401 2.7e-07 60.5 254 26.0
QL06p039590 Quercus lobata HOM05D001576 ORTHO05D000401 2.7e-07 60.5 116 30.2
Os06g0117800 Oryza sativa ssp. japonica HOM05D022687 ORTHO05D037261 3.6e-07 60.1 221 26.7
PSO541G0947 Papaver somniferum HOM05D008413 ORTHO05D000401 3.6e-07 60.1 159 27.7
PGR102G1986 Punica granatum HOM05D000012 ORTHO05D000856 3.6e-07 60.1 47 63.8
RhsimUnG0078100 Rhododendron simsii HOM05D009738 ORTHO05D011821 3.6e-07 60.1 271 31.7
CSS0006274 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 4.6e-07 59.7 206 27.7
CSS0015368 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 4.6e-07 59.7 199 29.1
Hma1.2p1_3143F.1_g333100 Hydrangea macrophylla HOM05D000012 ORTHO05D016402 4.6e-07 59.7 47 63.8
Prupe.1G172500 Prunus persica HOM05D001576 ORTHO05D000401 4.6e-07 59.7 198 27.8
Aqoxy3G02110 Aquilegia oxysepala HOM05D001576 ORTHO05D000401 6.1e-07 59.3 254 31.1
Aqoxy6G02363 Aquilegia oxysepala HOM05D001576 ORTHO05D000401 6.1e-07 59.3 252 30.2
CiPaw.12G041600 Carya illinoinensis HOM05D001576 ORTHO05D000401 6.1e-07 59.3 201 25.9
FAN09G0033 Fragaria x ananassa HOM05D007743 ORTHO05D004645 6.1e-07 59.3 262 24.4
QL10p048988 Quercus lobata HOM05D001576 ORTHO05D000401 6.1e-07 59.3 198 29.3
Aqoxy5G02988 Aquilegia oxysepala HOM05D001576 ORTHO05D000401 7.9e-07 58.9 254 23.6
Cfa009045 Carpinus fangiana HOM05D000012 ORTHO05D000856 7.9e-07 58.9 47 59.6
Cfa009046 Carpinus fangiana HOM05D000012 ORTHO05D000856 7.9e-07 58.9 47 59.6
QL02p009469 Quercus lobata HOM05D001576 ORTHO05D000401 7.9e-07 58.9 148 29.1
QL09p033218 Quercus lobata HOM05D001576 ORTHO05D000401 7.9e-07 58.9 131 29.0
MSTRG.7833 Avicennia marina HOM05D000012 ORTHO05D000856 1.0e-06 58.5 47 59.6
BolC1t03605H Brassica oleracea HOM05D000589 ORTHO05D000401 1.0e-06 58.5 109 31.2
CiPaw.01G075100 Carya illinoinensis HOM05D001576 ORTHO05D000401 1.0e-06 58.5 194 26.3
CiPaw.12G107800 Carya illinoinensis HOM05D001576 ORTHO05D000401 1.0e-06 58.5 83 32.5
TWI60G0823 Tripterygium wilfordii HOM05D001576 ORTHO05D010240 1.0e-06 58.5 260 25.4
GSVIVG01020084001 Vitis vinifera HOM05D000012 ORTHO05D000856 1.0e-06 58.5 47 63.8
CiPaw.13G129900 Carya illinoinensis HOM05D001576 ORTHO05D000401 1.3e-06 58.2 200 27.5
ATR0665G639 Amborella trichopoda HOM05D000012 ORTHO05D000856 1.8e-06 57.8 47 57.4
CSS0005302 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 1.8e-06 57.8 199 29.1
CSS0014799 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 1.8e-06 57.8 199 29.1
CSS0042927 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 1.8e-06 57.8 210 27.1
CANSAT01G3197 Cannabis sativa HOM05D001576 ORTHO05D010219 1.8e-06 57.8 243 23.9
FAN05G2464 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.8e-06 57.8 257 23.3
FAN08G2536 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.8e-06 57.8 257 23.3
FAN26G1586 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.8e-06 57.8 257 23.3
FAN26G1874 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.8e-06 57.8 257 23.7
vmacro19427 Vaccinium macrocarpon HOM05D000012 ORTHO05D000856 2.3e-06 57.4 47 55.3
Carub.0002s1657 Capsella rubella HOM05D000012 ORTHO05D000856 3.0e-06 57.0 47 59.6
FAN18G3916 Fragaria x ananassa HOM05D007743 ORTHO05D004645 3.0e-06 57.0 273 23.4
Pp3c21_7780 Physcomitrium patens HOM05D007803 ORTHO05D009814 3.0e-06 57.0 86 31.4
BcaB03g15510 Brassica carinata HOM05D000012 ORTHO05D000856 3.9e-06 56.6 47 57.4
Haze_12994 Corylus avellana HOM05D001576 ORTHO05D000401 3.9e-06 56.6 104 31.7
Zm00001eb138070 Zea mays HOM05D001576 ORTHO05D000401 3.9e-06 56.6 118 30.5
FvH4_4g35800 Fragaria vesca HOM05D000012 ORTHO05D000856 5.1e-06 56.2 45 62.2
FAN08G2971 Fragaria x ananassa HOM05D007743 ORTHO05D004645 5.1e-06 56.2 257 23.0
FAN12G0018 Fragaria x ananassa HOM05D000012 ORTHO05D000856 5.1e-06 56.2 45 62.2
FAN17G0614 Fragaria x ananassa HOM05D000012 ORTHO05D000856 5.1e-06 56.2 45 62.2
FAN22G0031 Fragaria x ananassa HOM05D000012 ORTHO05D000856 5.1e-06 56.2 45 62.2
Gohir.A04G097700 Gossypium hirsutum HOM05D000012 ORTHO05D000856 5.1e-06 56.2 47 55.3
TWI75G0264 Tripterygium wilfordii HOM05D000012 ORTHO05D000856 5.1e-06 56.2 47 57.4
TWI75G1262 Tripterygium wilfordii HOM05D000012 ORTHO05D000856 5.1e-06 56.2 47 53.2
BcaC08g45862 Brassica carinata HOM05D000012 ORTHO05D000856 6.7e-06 55.8 47 57.4
C06p36540 Brassica napus HOM05D000012 ORTHO05D000856 6.7e-06 55.8 47 57.4
BolC6t38769H Brassica oleracea HOM05D000012 ORTHO05D000856 6.7e-06 55.8 47 57.4
CiPaw.14G121300 Carya illinoinensis HOM05D001576 ORTHO05D010219 6.7e-06 55.8 190 29.5
Gohir.D04G137400 Gossypium hirsutum HOM05D000012 ORTHO05D000856 6.7e-06 55.8 47 55.3
Gorai.012G121800 Gossypium raimondii HOM05D000012 ORTHO05D000856 6.7e-06 55.8 47 55.3
Nn3g17114 Nelumbo nucifera HOM05D000012 ORTHO05D000856 6.7e-06 55.8 47 57.4
QL06p052750 Quercus lobata HOM05D001576 ORTHO05D000401 6.7e-06 55.8 104 32.7
Sc04g0008490 Simmondsia chinensis HOM05D000012 ORTHO05D000856 6.7e-06 55.8 47 55.3
Cpa.g.sc5.283 Carica papaya HOM05D000012 ORTHO05D000856 8.7e-06 55.5 47 55.3
CiPaw.12G006100 Carya illinoinensis HOM05D001576 ORTHO05D000401 8.7e-06 55.5 189 25.4
Ca_04702_v3 Cicer arietinum L. HOM05D000012 ORTHO05D000856 8.7e-06 55.5 47 57.4
Thecc.02G233500 Theobroma cacao HOM05D000012 ORTHO05D000856 8.7e-06 55.5 47 57.4
TAR371G0431 Trochodendron aralioides HOM05D000012 ORTHO05D002455 8.7e-06 55.5 47 61.7
TAR371G0551 Trochodendron aralioides HOM05D000012 ORTHO05D000856 8.7e-06 55.5 47 61.7


User provided reference genes

Program Settings