Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0040900 Rhododendron simsii HOM05D005436 ORTHO05D006215 1.7e-162 576.2 356 100.0
CSS0002796 Camellia sinensis var. sinensis HOM05D005436 ORTHO05D006215 2.0e-102 376.7 365 73.2
Actinidia27803 Actinidia chinensis HOM05D005436 ORTHO05D006215 1.3e-101 374.0 356 74.4
Manes.13G025400 Manihot esculenta HOM05D005436 ORTHO05D006215 1.4e-100 370.5 355 73.0
TAR629G0589 Trochodendron aralioides HOM05D005436 ORTHO05D006215 9.7e-94 347.8 358 68.7
TAR629G3419 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.7e-93 347.1 364 68.4
HanXRQChr08g0208111 Helianthus annuus HOM05D005436 ORTHO05D006215 2.2e-93 346.7 362 69.9
PGR119G1276 Punica granatum HOM05D005436 ORTHO05D006215 2.2e-93 346.7 304 79.3
EL10Ac6g13796 Beta vulgaris HOM05D005436 ORTHO05D006215 5.3e-92 342.0 355 67.3
COL.COLO4_24251 Corchorus olitorius HOM05D005436 ORTHO05D006215 9.1e-92 341.3 359 69.6
Atru.chr11.2113 Acer truncatum HOM05D005436 ORTHO05D006215 2.0e-91 340.1 355 68.7
Atru.chr11.2128 Acer truncatum HOM05D005436 ORTHO05D006215 2.0e-91 340.1 355 68.7
Potri.010G045300 Populus trichocarpa HOM05D005436 ORTHO05D006215 3.5e-91 339.3 355 69.6
CsaV3_2G024910 Cucumis sativus L. HOM05D005436 ORTHO05D006215 4.5e-91 339.0 372 67.2
Lsat_1_v5_gn_8_150780 Lactuca sativa HOM05D005436 ORTHO05D006215 1.0e-90 337.8 355 70.4
Lj3A1057T77 Lonicera japonica HOM05D005436 ORTHO05D006215 1.7e-90 337.0 353 70.5
Manes.12G023900 Manihot esculenta HOM05D005436 ORTHO05D006215 2.2e-90 336.7 315 75.2
Thecc.02G258400 Theobroma cacao HOM05D005436 ORTHO05D006215 3.8e-90 335.9 355 69.0
MSTRG.2420 Avicennia marina HOM05D005436 ORTHO05D006215 8.5e-90 334.7 356 69.7
Gorai.009G335800 Gossypium raimondii HOM05D005436 ORTHO05D006215 1.1e-89 334.3 355 70.4
CiPaw.05G183100 Carya illinoinensis HOM05D005436 ORTHO05D006215 1.5e-89 334.0 356 68.8
Nitab4.5_0004301g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.5e-89 334.0 356 69.1
Cfa009203 Carpinus fangiana HOM05D005436 ORTHO05D006215 1.9e-89 333.6 353 68.3
AUR62005449 Chenopodium quinoa HOM05D005436 ORTHO05D006215 2.5e-89 333.2 355 67.9
Gohir.A05G312700 Gossypium hirsutum HOM05D005436 ORTHO05D006215 5.5e-89 332.0 355 69.9
MSTRG.7922 Avicennia marina HOM05D005436 ORTHO05D006215 9.4e-89 331.3 351 69.5
Eucgr.H02509 Eucalyptus grandis HOM05D005436 ORTHO05D006215 1.2e-88 330.9 314 74.8
Duzib251G0682 Durio zibethinus HOM05D005436 ORTHO05D006215 1.6e-88 330.5 355 68.5
Migut.E00197 Erythranthe guttata HOM05D005436 ORTHO05D006215 1.6e-88 330.5 358 68.2
Sabra10G0023000 Salix brachista HOM05D005436 ORTHO05D006215 4.7e-88 328.9 353 68.3
QL03p058434 Quercus lobata HOM05D005436 ORTHO05D006215 8.0e-88 328.2 353 68.6
Oeu001711.1 Olea europaea HOM05D005436 ORTHO05D006215 1.4e-87 327.4 355 67.3
Ah.03g133110 Amaranthus hybridus HOM05D005436 ORTHO05D006215 1.8e-87 327.0 355 66.2
Ciclev10032010m.g Citrus clementina HOM05D005436 ORTHO05D006215 1.2e-86 324.3 355 67.3
Hund25385 Selenicereus undatus HOM05D005436 ORTHO05D006215 1.2e-86 324.3 356 66.3
Gohir.D01G151000 Gossypium hirsutum HOM05D005436 ORTHO05D006215 1.5e-86 323.9 342 70.5
Gohir.A01G159300 Gossypium hirsutum HOM05D005436 ORTHO05D006215 2.0e-86 323.6 318 74.5
THA.LOC104822162 Tarenaya hassleriana HOM05D005436 ORTHO05D006215 2.0e-86 323.6 356 67.7
Sp5g25750 Schrenkiella parvula HOM05D005436 ORTHO05D006215 2.6e-86 323.2 355 67.3
Gorai.002G187200 Gossypium raimondii HOM05D005436 ORTHO05D006215 4.4e-86 322.4 342 70.2
Carub.0002s1732 Capsella rubella HOM05D005436 ORTHO05D006215 5.7e-86 322.0 355 66.8
ClCG08G017720 Citrullus lanatus HOM05D005436 ORTHO05D006215 7.5e-86 321.6 370 65.7
AL2G30010 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 2.2e-85 320.1 357 66.1
MELO3C010688.2 Cucumis melo HOM05D005436 ORTHO05D006215 2.8e-85 319.7 399 49.9
PSO832G1925 Papaver somniferum HOM05D005436 ORTHO05D006215 2.8e-85 319.7 377 63.1
Nitab4.5_0000069g0320 Nicotiana tabacum HOM05D005436 ORTHO05D006215 3.7e-85 319.3 357 68.1
Sc14g0008720 Simmondsia chinensis HOM05D005436 ORTHO05D006215 3.1e-84 316.2 356 66.3
Prupe.1G243200 Prunus persica HOM05D005436 ORTHO05D006215 4.1e-84 315.8 353 66.3
Actinidia08140 Actinidia chinensis HOM05D005436 ORTHO05D006215 5.4e-84 315.5 307 75.2
vmacro01128 Vaccinium macrocarpon HOM05D005436 ORTHO05D006215 1.6e-83 313.9 297 78.1
TWI36G0572 Tripterygium wilfordii HOM05D005436 ORTHO05D006215 4.5e-83 312.4 352 67.0
MD13G1102600 Malus domestica HOM05D005436 ORTHO05D006215 1.0e-82 311.2 353 65.4
Lalb_Chr16g0381971 Lupinus albus HOM05D005436 ORTHO05D006215 3.8e-82 309.3 351 65.8
CDE07G1825 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 5.0e-82 308.9 358 62.6
Migut.L01484 Erythranthe guttata HOM05D005436 ORTHO05D006215 8.5e-82 308.1 292 75.3
SGA_v2.0_scaffold87G27081 Striga asiatica HOM05D005436 ORTHO05D006215 1.1e-81 307.8 351 66.1
SHI17740 Sapria himalayana HOM05D005436 ORTHO05D006215 4.2e-81 305.8 307 71.3
Sopen01g003470 Solanum pennellii HOM05D005436 ORTHO05D006215 1.2e-80 304.3 368 62.5
CANSAT01G1386 Cannabis sativa HOM05D005436 ORTHO05D006215 1.6e-80 303.9 355 58.0
A07p37030 Brassica napus HOM05D005436 ORTHO05D006215 2.7e-80 303.1 356 64.3
BraA07t31265Z Brassica rapa HOM05D005436 ORTHO05D006215 2.7e-80 303.1 364 63.5
CARHR063810 Cardamine hirsuta HOM05D005436 ORTHO05D006215 2.7e-80 303.1 355 64.2
PGSC0003DMG400016374 Solanum tuberosum HOM05D005436 ORTHO05D006215 2.7e-80 303.1 369 62.9
Solyc01g007930.4 Solanum lycopersicum HOM05D005436 ORTHO05D006215 6.1e-80 302.0 367 62.7
VMungo1215G1754 Vigna mungo HOM05D005436 ORTHO05D006215 6.1e-80 302.0 352 60.8
C06p44590 Brassica napus HOM05D005436 ORTHO05D006215 1.4e-79 300.8 356 64.3
Cpa.g.sc33.9 Carica papaya HOM05D005436 ORTHO05D006215 4.0e-79 299.3 306 69.0
ECA233G4095 Erigeron canadensis HOM05D005436 ORTHO05D006215 1.5e-78 297.4 298 70.1
unitig_744.g24291 Utricularia gibba HOM05D005436 ORTHO05D006215 2.6e-78 296.6 351 63.0
Thhalv10018848m.g Eutrema salsugineum HOM05D005436 ORTHO05D006215 4.4e-78 295.8 346 65.3
Sopen05g008220 Solanum pennellii HOM05D005436 ORTHO05D006215 5.7e-78 295.4 354 63.0
Glyma.01G026500 Glycine max HOM05D005436 ORTHO05D006215 7.5e-78 295.0 353 60.3
BolC6t39523H Brassica oleracea HOM05D005436 ORTHO05D006215 9.8e-78 294.7 357 63.6
Aqoxy5G03784 Aquilegia oxysepala HOM05D005436 ORTHO05D006215 2.2e-77 293.5 354 62.7
Nitab4.5_0002631g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.4e-76 290.8 341 65.7
AT1G70590 Arabidopsis thaliana HOM05D005436 ORTHO05D006215 5.4e-76 288.9 358 62.6
PGSC0003DMG400018621 Solanum tuberosum HOM05D005436 ORTHO05D006215 5.4e-76 288.9 354 64.1
Solyc05g013410.3 Solanum lycopersicum HOM05D005436 ORTHO05D006215 7.0e-76 288.5 355 62.3
Lj2g0004338 Lotus japonicus HOM05D005436 ORTHO05D006215 1.6e-75 287.3 352 61.9
arahy.Tifrunner.gnm1.ann1.9TCE4B Arachis hypogaea HOM05D005436 ORTHO05D006215 4.5e-75 285.8 351 63.2
Dinv15239 Davidia involucrata HOM05D005436 ORTHO05D006215 7.7e-75 285.0 244 64.8
Aa31LG4G10370 Aethionema arabicum HOM05D005436 ORTHO05D006215 1.3e-74 284.3 360 61.9
DCAR_024434 Daucus carota HOM05D005436 ORTHO05D006215 1.7e-74 283.9 359 60.2
Glyma.02G038300 Glycine max HOM05D005436 ORTHO05D006215 2.9e-74 283.1 352 56.5
ATR0686G177 Amborella trichopoda HOM05D005436 ORTHO05D006215 1.1e-73 281.2 350 61.1
CAN.G282.54 Capsicum annuum HOM05D005436 ORTHO05D006215 1.5e-73 280.8 360 61.4
Nitab4.5_0000740g0060 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.9e-73 280.4 354 62.4
Medtr5g033210 Medicago truncatula HOM05D005436 ORTHO05D006215 1.2e-72 277.7 352 60.2
Sed0020021 Sechium edule HOM05D005436 ORTHO05D006215 4.0e-71 272.7 298 58.4
TAR371G0549 Trochodendron aralioides HOM05D005436 ORTHO05D006215 3.7e-69 266.2 255 58.4
Lalb_Chr09g0326141 Lupinus albus HOM05D005436 ORTHO05D006215 3.2e-68 263.1 351 58.7
RcHm_v2.0_Chr4g0432791 Rosa chinensis HOM05D005436 ORTHO05D006215 5.4e-68 262.3 353 61.2
Ca_04576_v3 Cicer arietinum L. HOM05D005436 ORTHO05D006215 7.0e-68 261.9 352 59.9
Gohir.D05G314200 Gossypium hirsutum HOM05D005436 ORTHO05D006215 2.0e-67 260.4 235 61.7
Phvul.002G150600 Phaseolus vulgaris HOM05D005436 ORTHO05D006215 4.6e-67 259.2 352 54.8
MBI10_g03014_MAGBIO Magnolia biondii HOM05D005436 ORTHO05D006215 5.0e-66 255.8 326 62.9
AUR62024292 Chenopodium quinoa HOM05D005436 ORTHO05D006215 1.1e-65 254.6 237 78.9
Nn4g22635 Nelumbo nucifera HOM05D005436 ORTHO05D006215 1.1e-65 254.6 252 56.3
arahy.Tifrunner.gnm1.ann1.RINP63 Arachis hypogaea HOM05D005436 ORTHO05D006215 2.5e-65 253.4 427 52.0
SEGI_41390 Sequoiadendron giganteum HOM05D005436 ORTHO05D006215 2.5e-65 253.4 316 62.0
Haze_12240 Corylus avellana HOM05D005436 ORTHO05D006215 2.1e-64 250.4 235 56.2
FvH4_4g25470 Fragaria vesca HOM05D005436 ORTHO05D006215 3.1e-63 246.5 354 57.6
HPP92_021381 Vanilla planifolia HOM05D005436 ORTHO05D006215 1.2e-62 244.6 352 58.2
FAN17G0814 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.6e-62 243.4 353 56.1
SalBow2G2235 Salvia bowleyana HOM05D005436 ORTHO05D006215 5.8e-62 242.3 316 62.7
FAN07G0404 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.2e-61 240.4 353 55.8
Potri.008G187200 Populus trichocarpa HOM05D005436 ORTHO05D006215 3.7e-61 239.6 195 63.1
unitig_21.g20870 Utricularia gibba HOM05D005436 ORTHO05D006215 1.4e-60 237.7 321 45.2
BcaB03g14825 Brassica carinata HOM05D005436 ORTHO05D006215 3.2e-60 236.5 207 62.3
FAN12G3651 Fragaria x ananassa HOM05D005436 ORTHO05D006215 4.1e-60 236.1 381 39.9
FAN22G0693 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.0e-54 217.2 353 53.8
GSVIVG01004082001 Vitis vinifera HOM05D005436 ORTHO05D006215 1.1e-47 194.9 194 80.9
Pp3c16_22820 Physcomitrium patens HOM05D005436 ORTHO05D006215 4.4e-46 189.5 347 51.3
Cc11_g15600 Coffea canephora HOM05D005436 ORTHO05D006215 5.4e-44 182.6 194 77.8
Peaxi162Scf00128g00005 Petunia axillaris HOM05D005436 ORTHO05D006215 6.0e-43 179.1 241 65.6
SMO334G0079 Selaginella moellendorffii HOM05D005436 ORTHO05D006215 6.6e-42 175.6 269 58.0
Psat2g092560 Pisum sativum HOM05D005436 ORTHO05D006215 1.5e-41 174.5 193 54.4
CAN.G227.3 Capsicum annuum HOM05D005436 ORTHO05D006215 1.9e-41 174.1 194 54.1
CDE04G1163 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 1.5e-38 164.5 219 41.6
RcHm_v2.0_Chr7g0240871 Rosa chinensis HOM05D005436 ORTHO05D006215 2.0e-38 164.1 212 46.2
AagrBONN_evm.TU.Sc2ySwM_344.5149 Anthoceros agrestis HOM05D005436 ORTHO05D006215 3.2e-36 156.8 283 53.0
Os04g0476000 Oryza sativa ssp. japonica HOM05D005436 ORTHO05D006215 4.3e-33 146.4 291 51.2
CBR_g41529 Chara braunii HOM05D005436 ORTHO05D006215 1.4e-31 141.4 126 56.3
TAR371G0328 Trochodendron aralioides HOM05D005436 ORTHO05D006215 8.4e-29 132.1 148 87.2
FAN18G0478 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.9e-28 131.0 194 41.2
FAN13G0137 Fragaria x ananassa HOM05D005436 ORTHO05D006215 6.0e-27 125.9 194 40.7
CAN.G227.4 Capsicum annuum HOM05D005436 ORTHO05D006215 5.1e-26 122.9 160 76.2
FAN08G0615 Fragaria x ananassa HOM05D005436 ORTHO05D006215 3.3e-25 120.2 183 40.4
TPR.G38771 Trifolium pratense HOM05D005436 ORTHO05D006215 9.0e-23 112.1 84 61.9
TAR633G1814 Trochodendron aralioides HOM05D005436 ORTHO05D006215 9.9e-22 108.6 128 87.5
FvH4_5g38910 Fragaria vesca HOM05D005436 ORTHO05D006215 3.8e-21 106.7 114 47.4
TAR314G0004 Trochodendron aralioides HOM05D005436 ORTHO05D006215 3.2e-20 103.6 81 63.0
TAR371G0429 Trochodendron aralioides HOM05D044080 ORTHO05D006215 2.7e-19 100.5 134 66.4
TPR.G38818 Trifolium pratense HOM05D005436 ORTHO05D006215 9.6e-17 92.0 64 70.3
RcHm_v2.0_Chr4g0436601 Rosa chinensis HOM05D005436 ORTHO05D006215 1.3e-16 91.7 84 57.1
TAR633G0170 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.1e-15 88.6 134 81.3
TAR314G0002 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.4e-12 78.2 127 79.5
AL3G40260 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 1.9e-09 67.8 56 60.7
RcHm_v2.0_Chr2g0120671 Rosa chinensis HOM05D009478 ORTHO05D010213 5.7e-09 66.2 43 60.5
FAN04G3213 Fragaria x ananassa HOM05D036052 ORTHO05D006215 4.1e-07 60.1 54 50.0
Zm00001eb344380 Zea mays HOM05D005436 ORTHO05D006215 4.1e-07 60.1 58 50.0
FAN09G1413 Fragaria x ananassa HOM05D036052 ORTHO05D006215 9.0e-07 58.9 51 51.0
Hma1.2p1_0870F.1_g230930 Hydrangea macrophylla HOM05D005436 ORTHO05D006215 1.5e-06 58.2 46 71.7
RcHm_v2.0_Chr1g0318701 Rosa chinensis HOM05D005436 ORTHO05D006215 1.5e-06 58.2 56 55.4


User provided reference genes

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