Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0039200 Rhododendron simsii HOM05D007686 ORTHO05D009709 1.3e-112 411.4 642 100.0
CSS0050065 Camellia sinensis var. sinensis HOM05D007686 ORTHO05D009709 5.2e-21 107.1 60 85.0
MD13G1103100 Malus domestica HOM05D007686 ORTHO05D009709 3.4e-20 104.4 60 81.7
Prupe.1G242700 Prunus persica HOM05D007686 ORTHO05D009709 2.9e-19 101.3 60 80.0
MD16G1103300 Malus domestica HOM05D007686 ORTHO05D009709 3.7e-19 100.9 57 82.5
Gohir.A04G137000 Gossypium hirsutum HOM05D007686 ORTHO05D009709 4.9e-19 100.5 59 79.7
ECA233G6157 Erigeron canadensis HOM05D007686 ORTHO05D009709 1.1e-18 99.4 59 79.7
TWI18G1075 Tripterygium wilfordii HOM05D007686 ORTHO05D009709 1.1e-18 99.4 60 78.3
CiPaw.05G168000 Carya illinoinensis HOM05D007686 ORTHO05D009709 2.4e-18 98.2 60 76.7
Ciclev10031251m.g Citrus clementina HOM05D007686 ORTHO05D009709 2.4e-18 98.2 58 81.0
Gohir.D04G180200 Gossypium hirsutum HOM05D007686 ORTHO05D009709 3.2e-18 97.8 59 78.0
Gorai.012G173300 Gossypium raimondii HOM05D007686 ORTHO05D009709 4.1e-18 97.4 59 78.0
HanXRQChr08g0208401 Helianthus annuus HOM05D007686 ORTHO05D009709 5.4e-18 97.1 60 78.3
Dinv14741 Davidia involucrata HOM05D007686 ORTHO05D009709 7.0e-18 96.7 60 76.7
DCAR_031167 Daucus carota HOM05D002540 ORTHO05D002672 2.7e-17 94.7 60 71.7
PGR119G1810 Punica granatum HOM05D007686 ORTHO05D009709 3.5e-17 94.4 59 72.9
Eucgr.H02473 Eucalyptus grandis HOM05D007686 ORTHO05D009709 4.6e-17 94.0 60 73.3
Potri.008G185000 Populus trichocarpa HOM05D007686 ORTHO05D009709 4.6e-17 94.0 58 75.9
Solyc06g008190.1 Solanum lycopersicum HOM05D007686 ORTHO05D009709 4.6e-17 94.0 60 73.3
Sopen06g003050 Solanum pennellii HOM05D007686 ORTHO05D009709 4.6e-17 94.0 60 73.3
CANSAT01G2773 Cannabis sativa HOM05D007686 ORTHO05D009709 6.0e-17 93.6 58 75.9
FAN12G1967 Fragaria x ananassa HOM05D007686 ORTHO05D009709 6.0e-17 93.6 58 74.1
RcHm_v2.0_Chr4g0432731 Rosa chinensis HOM05D007686 ORTHO05D009709 7.8e-17 93.2 59 72.9
SGA_v2.0_scaffold100G29576 Striga asiatica HOM05D007686 ORTHO05D009709 7.8e-17 93.2 60 65.0
Migut.K00622 Erythranthe guttata HOM05D007686 ORTHO05D009709 1.0e-16 92.8 60 68.3
Lalb_Chr07g0185471 Lupinus albus HOM05D007686 ORTHO05D009709 3.0e-16 91.3 60 70.0
Lj3P1060G37 Lonicera japonica HOM05D007686 ORTHO05D009709 5.1e-16 90.5 60 73.3
Sabra08G0140000 Salix brachista HOM05D007686 ORTHO05D009709 6.6e-16 90.1 58 72.4
TWI36G0128 Tripterygium wilfordii HOM05D007686 ORTHO05D009709 6.6e-16 90.1 58 72.4
MSTRG.555 Avicennia marina HOM05D007686 ORTHO05D009709 1.5e-15 89.0 58 67.2
GSVIVG01000559001 Vitis vinifera HOM05D007686 ORTHO05D009709 1.5e-15 89.0 57 75.4
arahy.Tifrunner.gnm1.ann1.BXJH78 Arachis hypogaea HOM05D007686 ORTHO05D009709 1.9e-15 88.6 60 65.0
Cpa.g.sc33.48 Carica papaya HOM05D007686 ORTHO05D009709 1.9e-15 88.6 58 72.4
QL03p056833 Quercus lobata HOM05D007686 ORTHO05D009709 3.3e-15 87.8 52 80.8
QL93p1848_0021 Quercus lobata HOM05D007686 ORTHO05D009709 3.3e-15 87.8 52 80.8
Hma1.2p1_0815F.1_g222720 Hydrangea macrophylla HOM05D007686 ORTHO05D009709 4.3e-15 87.4 56 73.2
Thecc.02G263700 Theobroma cacao HOM05D007686 ORTHO05D009709 1.6e-14 85.5 59 67.8
Manes.13G022000 Manihot esculenta HOM05D007686 ORTHO05D009709 2.1e-14 85.1 59 66.1
Psat7g058760 Pisum sativum HOM05D007686 ORTHO05D009709 2.1e-14 85.1 59 64.4
Glyma.05G173932 Glycine max HOM05D007686 ORTHO05D009709 3.6e-14 84.3 58 65.5
Nitab4.5_0000067g0230 Nicotiana tabacum HOM05D007686 ORTHO05D009709 4.7e-14 84.0 47 80.9
PSO724G0460 Papaver somniferum HOM05D007686 ORTHO05D009709 4.7e-14 84.0 61 65.6
TPR.G6255 Trifolium pratense HOM05D007686 ORTHO05D009709 4.7e-14 84.0 59 66.1
Glyma.08G131100 Glycine max HOM05D007686 ORTHO05D009709 1.8e-13 82.0 59 62.7
Medtr8g089700 Medicago truncatula HOM05D007686 ORTHO05D009709 1.8e-13 82.0 54 68.5
Lj4g0016926 Lotus japonicus HOM05D007686 ORTHO05D009709 2.3e-13 81.6 53 69.8
MBI17_g12881_MAGBIO Magnolia biondii HOM05D007686 ORTHO05D009709 2.3e-13 81.6 62 61.3
Manes.13G021400 Manihot esculenta HOM05D007686 ORTHO05D009709 2.3e-13 81.6 59 62.7
AUR62011787 Chenopodium quinoa HOM05D007686 ORTHO05D009709 4.0e-13 80.9 59 64.4
CsaV3_5G030960 Cucumis sativus L. HOM05D007686 ORTHO05D009709 4.0e-13 80.9 58 65.5
FvH4_4g25420 Fragaria vesca HOM05D007686 ORTHO05D009709 4.0e-13 80.9 47 76.6
Atru.chr11.2166 Acer truncatum HOM05D007686 ORTHO05D009709 5.2e-13 80.5 49 79.6
Sc06g0009620 Simmondsia chinensis HOM05D007686 ORTHO05D009709 6.8e-13 80.1 52 73.1
Nitab4.5_0001839g0010 Nicotiana tabacum HOM05D007686 ORTHO05D009709 8.9e-13 79.7 47 76.6
PSO135G0590 Papaver somniferum HOM05D007686 ORTHO05D009709 8.9e-13 79.7 60 63.3
Phvul.002G258900 Phaseolus vulgaris HOM05D007686 ORTHO05D009709 8.9e-13 79.7 66 56.1
SHI17831 Sapria himalayana HOM05D007686 ORTHO05D009709 1.2e-12 79.3 61 67.2
EL10Ac7g16785 Beta vulgaris HOM05D007686 ORTHO05D009709 2.0e-12 78.6 57 64.9
ClCG05G025900 Citrullus lanatus HOM05D007686 ORTHO05D009709 2.0e-12 78.6 58 62.1
Ca_17785_v3 Cicer arietinum L. HOM05D007686 ORTHO05D009709 4.4e-12 77.4 54 64.8
Sed0013465 Sechium edule HOM05D007686 ORTHO05D009709 4.4e-12 77.4 58 62.1
CDE05G1633 Ceratophyllum demersum HOM05D000570 ORTHO05D001174 2.2e-11 75.1 54 64.8
AT1G13040 Arabidopsis thaliana HOM05D007686 ORTHO05D009709 2.9e-11 74.7 51 70.6
AL1G24690 Arabidopsis lyrata HOM05D007686 ORTHO05D009709 4.9e-11 73.9 51 70.6
Aqoxy2G03020 Aquilegia oxysepala HOM05D007686 ORTHO05D009709 1.9e-10 72.0 55 61.8
Sp1g11590 Schrenkiella parvula HOM05D007686 ORTHO05D009709 1.9e-10 72.0 51 68.6
Carub.0001s1279 Capsella rubella HOM05D007686 ORTHO05D009709 2.4e-10 71.6 51 68.6
BcaC05g25091 Brassica carinata HOM05D007686 ORTHO05D009709 7.1e-10 70.1 49 67.3
A06p08670 Brassica napus HOM05D002540 ORTHO05D002672 7.1e-10 70.1 49 67.3
BolC5t29774H Brassica oleracea HOM05D007686 ORTHO05D009709 7.1e-10 70.1 49 67.3
BraA06t24064Z Brassica rapa HOM05D007686 ORTHO05D009709 7.1e-10 70.1 49 67.3
THA.LOC104805275 Tarenaya hassleriana HOM05D007686 ORTHO05D009709 7.1e-10 70.1 48 68.8
Aa31LG1G1760 Aethionema arabicum HOM05D007686 ORTHO05D009709 1.6e-09 68.9 50 66.0
C05p10280 Brassica napus HOM05D002540 ORTHO05D002672 1.6e-09 68.9 49 65.3
TAR383G0079 Trochodendron aralioides HOM05D007686 ORTHO05D009709 1.6e-09 68.9 45 71.1
CARHR013370 Cardamine hirsuta HOM05D007686 ORTHO05D009709 2.1e-09 68.6 49 69.4
C08p15790 Brassica napus HOM05D002540 ORTHO05D002672 7.8e-09 66.6 49 67.3
BolC8t49205H Brassica oleracea HOM05D002540 ORTHO05D002672 7.8e-09 66.6 49 67.3
Thhalv10007381m.g Eutrema salsugineum HOM05D007686 ORTHO05D009709 1.3e-08 65.9 49 65.3
Os07g0688100 Oryza sativa ssp. japonica HOM05D007686 ORTHO05D009709 1.3e-08 65.9 71 43.7
Zm00001eb331140 Zea mays HOM05D007686 ORTHO05D009709 1.3e-08 65.9 62 48.4
A08p32500 Brassica napus HOM05D007686 ORTHO05D009709 2.3e-08 65.1 49 65.3
BraA08t35174Z Brassica rapa HOM05D007686 ORTHO05D009709 2.3e-08 65.1 49 65.3
HPP92_012781 Vanilla planifolia HOM05D007686 ORTHO05D009709 8.1e-06 56.6 35 74.3


User provided reference genes

Program Settings