Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0035500 Rhododendron simsii HOM05D004675 ORTHO05D005631 5.1e-105 384.4 194 100.0
Thecc.02G273100 Theobroma cacao HOM05D004675 ORTHO05D005631 3.5e-98 361.7 208 88.5
CiPaw.06G062900 Carya illinoinensis HOM05D004675 ORTHO05D005631 4.6e-98 361.3 208 88.0
MD16G1109600 Malus domestica HOM05D004675 ORTHO05D005631 4.6e-98 361.3 208 88.5
Gohir.A03G129700 Gossypium hirsutum HOM05D004675 ORTHO05D005631 6.1e-98 360.9 208 88.5
CSS0008983 Camellia sinensis var. sinensis HOM05D004675 ORTHO05D005631 7.9e-98 360.5 207 87.9
COL.COLO4_23607 Corchorus olitorius HOM05D004675 ORTHO05D005631 7.9e-98 360.5 208 88.0
Duzib251G0102 Durio zibethinus HOM05D004675 ORTHO05D005631 7.9e-98 360.5 208 88.0
MD13G1109700 Malus domestica HOM05D004675 ORTHO05D005631 1.3e-97 359.8 208 88.0
Duzib268G1570 Durio zibethinus HOM05D004675 ORTHO05D005631 1.8e-97 359.4 208 87.5
vmacro01089 Vaccinium macrocarpon HOM05D004675 ORTHO05D005631 1.8e-97 359.4 218 85.3
Gohir.D02G155000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 2.3e-97 359.0 208 88.0
Gorai.005G172500 Gossypium raimondii HOM05D004675 ORTHO05D005631 2.3e-97 359.0 208 88.0
Potri.010G055100 Populus trichocarpa HOM05D004675 ORTHO05D005631 3.0e-97 358.6 208 87.5
RcHm_v2.0_Chr4g0431671 Rosa chinensis HOM05D004675 ORTHO05D005631 3.9e-97 358.2 206 88.3
Glyma.18G009900 Glycine max HOM05D004675 ORTHO05D005631 5.1e-97 357.8 208 87.0
Potri.008G179600 Populus trichocarpa HOM05D004675 ORTHO05D005631 5.1e-97 357.8 208 88.0
Duzib248G1503 Durio zibethinus HOM05D004675 ORTHO05D005631 6.7e-97 357.5 207 87.9
FvH4_4g24620 Fragaria vesca HOM05D004675 ORTHO05D005631 6.7e-97 357.5 206 88.3
GSVIVG01010325001 Vitis vinifera HOM05D004675 ORTHO05D005631 1.1e-96 356.7 208 87.5
Prupe.1G235300 Prunus persica HOM05D004675 ORTHO05D005631 1.5e-96 356.3 208 87.0
Actinidia30679 Actinidia chinensis HOM05D004675 ORTHO05D005631 1.9e-96 355.9 208 86.5
arahy.Tifrunner.gnm1.ann1.06P6RC Arachis hypogaea HOM05D004675 ORTHO05D005631 1.9e-96 355.9 206 86.9
arahy.Tifrunner.gnm1.ann1.J0N2EL Arachis hypogaea HOM05D004675 ORTHO05D005631 1.9e-96 355.9 206 86.9
Haze_12338 Corylus avellana HOM05D004675 ORTHO05D005631 1.9e-96 355.9 208 86.5
Prupe.1G235600 Prunus persica HOM05D004675 ORTHO05D005631 1.9e-96 355.9 208 87.0
MSTRG.7971 Avicennia marina HOM05D004675 ORTHO05D005631 2.5e-96 355.5 206 87.4
Oeu041690.1 Olea europaea HOM05D004675 ORTHO05D005631 2.5e-96 355.5 210 86.2
TWI18G0072 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 2.5e-96 355.5 208 86.1
VMungo1383G2932 Vigna mungo HOM05D004675 ORTHO05D005631 2.5e-96 355.5 208 86.5
Ciclev10032763m.g Citrus clementina HOM05D004675 ORTHO05D005631 4.3e-96 354.8 208 87.0
Gohir.A01G156300 Gossypium hirsutum HOM05D004675 ORTHO05D005631 5.7e-96 354.4 208 86.5
Oeu038665.1 Olea europaea HOM05D004675 ORTHO05D005631 5.7e-96 354.4 206 87.4
HanXRQChr06g0174811 Helianthus annuus HOM05D004675 ORTHO05D005631 7.4e-96 354.0 208 86.1
MSTRG.527 Avicennia marina HOM05D004675 ORTHO05D005631 9.7e-96 353.6 206 86.9
Cpa.g.c35504 Carica papaya HOM05D004675 ORTHO05D005631 9.7e-96 353.6 208 86.5
Gorai.002G190700 Gossypium raimondii HOM05D004675 ORTHO05D005631 1.3e-95 353.2 208 86.1
Dinv18164 Davidia involucrata HOM05D004675 ORTHO05D005631 1.6e-95 352.8 208 85.6
Gohir.D01G154000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.6e-95 352.8 208 86.1
Manes.13G014900 Manihot esculenta HOM05D004675 ORTHO05D005631 1.6e-95 352.8 208 86.1
Phvul.001G258800 Phaseolus vulgaris HOM05D004675 ORTHO05D005631 1.6e-95 352.8 208 85.6
Sabra08G0137200 Salix brachista HOM05D004675 ORTHO05D005631 1.6e-95 352.8 208 87.0
Atru.chr11.2230 Acer truncatum HOM05D004675 ORTHO05D005631 2.8e-95 352.1 208 86.1
Lalb_Chr08g0230731 Lupinus albus HOM05D004675 ORTHO05D005631 2.8e-95 352.1 208 85.6
Manes.12G015800 Manihot esculenta HOM05D004675 ORTHO05D005631 2.8e-95 352.1 208 86.1
TWI75G1255 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 2.8e-95 352.1 213 84.0
CANSAT01G3139 Cannabis sativa HOM05D004675 ORTHO05D005631 4.8e-95 351.3 206 85.9
Cc11_g16480 Coffea canephora HOM05D004675 ORTHO05D005631 4.8e-95 351.3 206 86.9
HanXRQChr17g0540031 Helianthus annuus HOM05D004675 ORTHO05D005631 4.8e-95 351.3 208 85.6
Psat5g093080 Pisum sativum HOM05D004675 ORTHO05D005631 8.2e-95 350.5 208 84.6
Lj6g0000646 Lotus japonicus HOM05D004675 ORTHO05D005631 1.1e-94 350.1 208 86.1
SGA_v2.0_scaffold1G00563 Striga asiatica HOM05D004675 ORTHO05D005631 1.8e-94 349.4 206 86.4
Hund02761 Selenicereus undatus HOM05D004675 ORTHO05D005631 2.4e-94 349.0 208 85.6
Nn3g16555 Nelumbo nucifera HOM05D004675 ORTHO05D005631 3.1e-94 348.6 208 85.6
Lsat_1_v5_gn_3_29441 Lactuca sativa HOM05D004675 ORTHO05D005631 4.1e-94 348.2 206 84.5
MBI11_g02883_MAGBIO Magnolia biondii HOM05D004675 ORTHO05D005631 6.9e-94 347.4 208 85.1
Medtr3g085940 Medicago truncatula HOM05D004675 ORTHO05D005631 1.2e-93 346.7 208 84.1
SalBow2G2451 Salvia bowleyana HOM05D004675 ORTHO05D005631 1.5e-93 346.3 206 85.0
Hma1.2p1_0079F.1_g041690 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 2.0e-93 345.9 208 85.1
ClCG05G026270 Citrullus lanatus HOM05D004675 ORTHO05D005631 2.6e-93 345.5 207 84.1
THA.LOC104805258 Tarenaya hassleriana HOM05D004675 ORTHO05D005631 2.6e-93 345.5 208 84.6
CsaV3_5G030550 Cucumis sativus L. HOM05D004675 ORTHO05D005631 3.4e-93 345.1 208 84.1
TAR629G1273 Trochodendron aralioides HOM05D004675 ORTHO05D005631 3.4e-93 345.1 208 84.1
Aqoxy5G03546 Aquilegia oxysepala HOM05D004675 ORTHO05D005631 4.5e-93 344.7 208 83.2
DCAR_007019 Daucus carota HOM05D004675 ORTHO05D005631 4.5e-93 344.7 206 84.5
SalBow8G5054 Salvia bowleyana HOM05D004675 ORTHO05D005631 5.9e-93 344.4 208 83.2
PGR102G1366 Punica granatum HOM05D004675 ORTHO05D005631 1.0e-92 343.6 208 83.7
CAN.G227.11 Capsicum annuum HOM05D004675 ORTHO05D005631 1.3e-92 343.2 209 84.7
Migut.K00688 Erythranthe guttata HOM05D004675 ORTHO05D005631 1.3e-92 343.2 206 83.5
PSO063G1359 Papaver somniferum HOM05D004675 ORTHO05D005631 1.3e-92 343.2 205 85.4
PSO782G3312 Papaver somniferum HOM05D004675 ORTHO05D005631 1.3e-92 343.2 205 85.4
Solyc05g014370.3 Solanum lycopersicum HOM05D004675 ORTHO05D005631 1.3e-92 343.2 209 84.7
Sopen05g009500 Solanum pennellii HOM05D004675 ORTHO05D005631 1.3e-92 343.2 209 84.7
MELO3C011895.2 Cucumis melo HOM05D004675 ORTHO05D005631 1.7e-92 342.8 203 85.2
PGSC0003DMG400017457 Solanum tuberosum HOM05D004675 ORTHO05D005631 1.7e-92 342.8 209 84.7
unitig_8.g3141 Utricularia gibba HOM05D004675 ORTHO05D005631 1.7e-92 342.8 207 83.6
Sed0023640 Sechium edule HOM05D004675 ORTHO05D005631 5.0e-92 341.3 206 84.0
BcaB07g30625 Brassica carinata HOM05D004675 ORTHO05D005631 8.5e-92 340.5 208 83.7
A09p25100 Brassica napus HOM05D004675 ORTHO05D005631 8.5e-92 340.5 208 83.7
BraA09t38098Z Brassica rapa HOM05D004675 ORTHO05D005631 8.5e-92 340.5 208 83.7
QL03p055286 Quercus lobata HOM05D004675 ORTHO05D005631 1.4e-91 339.7 207 85.0
BcaC04g21407 Brassica carinata HOM05D004675 ORTHO05D005631 1.9e-91 339.3 208 83.2
C09p32160 Brassica napus HOM05D004675 ORTHO05D005631 1.9e-91 339.3 208 83.2
BolC9t56064H Brassica oleracea HOM05D004675 ORTHO05D005631 1.9e-91 339.3 208 83.2
Os04g0486500 Oryza sativa ssp. japonica HOM05D004675 ORTHO05D005631 4.2e-91 338.2 208 81.7
CDE02G3169 Ceratophyllum demersum HOM05D004675 ORTHO05D005631 5.5e-91 337.8 208 82.2
Aa31LG2G6360 Aethionema arabicum HOM05D004675 ORTHO05D005631 1.2e-90 336.7 208 81.7
Sabra10G0049900 Salix brachista HOM05D004675 ORTHO05D005631 2.1e-90 335.9 208 84.6
ATR0686G191 Amborella trichopoda HOM05D004675 ORTHO05D005631 3.6e-90 335.1 208 80.8
Dinv11000 Davidia involucrata HOM05D004675 ORTHO05D005631 7.9e-90 334.0 196 87.8
Peaxi162Scf00128g00833 Petunia axillaris HOM05D004675 ORTHO05D005631 7.9e-90 334.0 207 84.1
Thhalv10004915m.g Eutrema salsugineum HOM05D004675 ORTHO05D005631 1.4e-89 333.2 208 82.2
Sp2g15200 Schrenkiella parvula HOM05D004675 ORTHO05D005631 1.8e-89 332.8 208 82.2
HPP92_024302 Vanilla planifolia HOM05D004675 ORTHO05D005631 1.8e-89 332.8 208 79.3
HPP92_024295 Vanilla planifolia HOM05D004675 ORTHO05D005631 3.0e-89 332.0 208 79.3
FAN07G1447 Fragaria x ananassa HOM05D004675 ORTHO05D005631 3.9e-89 331.6 206 84.0
FAN12G3600 Fragaria x ananassa HOM05D004675 ORTHO05D005631 3.9e-89 331.6 206 84.0
AL5G14640 Arabidopsis lyrata HOM05D004675 ORTHO05D005631 5.1e-89 331.3 208 81.2
Carub.0005s0383 Capsella rubella HOM05D004675 ORTHO05D005631 1.5e-88 329.7 208 80.8
FAN17G2208 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.5e-88 329.7 206 83.5
FAN22G1703 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.4e-86 323.2 206 81.6
Dinv18160 Davidia involucrata HOM05D004675 ORTHO05D005631 3.1e-86 322.0 194 85.1
AT3G25980 Arabidopsis thaliana HOM05D004675 ORTHO05D005631 7.7e-85 317.4 208 79.3
CiPaw.05G173000 Carya illinoinensis HOM05D004675 ORTHO05D005631 1.1e-83 313.5 178 88.8
QL11p019873 Quercus lobata HOM05D004675 ORTHO05D005631 1.9e-83 312.8 178 88.8
Hund25435 Selenicereus undatus HOM05D004675 ORTHO05D005631 1.9e-83 312.8 208 79.8
QL11p019923 Quercus lobata HOM05D004675 ORTHO05D005631 2.7e-82 308.9 178 88.2
Ca_16490_v3 Cicer arietinum L. HOM05D004675 ORTHO05D005631 3.0e-81 305.4 179 85.5
AUR62024170 Chenopodium quinoa HOM05D004675 ORTHO05D005631 5.7e-80 301.2 206 77.7
SEGI_13539 Sequoiadendron giganteum HOM05D004675 ORTHO05D005631 9.7e-80 300.4 208 72.1
ECA246G2134 Erigeron canadensis HOM05D004675 ORTHO05D005631 6.3e-79 297.7 179 82.7
CARHR146960 Cardamine hirsuta HOM05D004675 ORTHO05D005631 1.6e-77 293.1 177 82.5
Zm00001eb425240 Zea mays HOM05D004675 ORTHO05D005631 7.7e-77 290.8 190 78.4
AUR62005564 Chenopodium quinoa HOM05D004675 ORTHO05D005631 1.3e-76 290.0 210 76.2
Zm00001eb079190 Zea mays HOM05D004675 ORTHO05D005631 8.0e-74 280.8 204 71.6
EL10Ac6g13425 Beta vulgaris HOM05D004675 ORTHO05D005631 3.1e-70 268.9 193 73.6
Sed0021695 Sechium edule HOM05D004675 ORTHO05D005631 5.3e-70 268.1 167 81.4
Glyma.11G247400 Glycine max HOM05D004675 ORTHO05D005631 2.7e-69 265.8 141 92.9
Sc04g0009910 Simmondsia chinensis HOM05D004675 ORTHO05D005631 1.9e-67 259.6 156 84.6
Eucgr.B03457 Eucalyptus grandis HOM05D004675 ORTHO05D005631 8.8e-65 250.8 163 80.4
Mapoly0038s0109 Marchantia polymorpha HOM05D004675 ORTHO05D005631 1.2e-61 240.4 202 59.4
Nitab4.5_0001898g0060 Nicotiana tabacum HOM05D004675 ORTHO05D005631 1.2e-61 240.4 232 59.5
Pp3c4_13910 Physcomitrium patens HOM05D004675 ORTHO05D005631 5.9e-61 238.0 203 58.6
SMO201G0213 Selaginella moellendorffii HOM05D004675 ORTHO05D005631 1.3e-60 236.9 202 57.9
Actinidia08092 Actinidia chinensis HOM05D004675 ORTHO05D005631 1.1e-59 233.8 120 94.2
Nitab4.5_0000581g0180 Nicotiana tabacum HOM05D004675 ORTHO05D005631 7.2e-59 231.1 206 62.6
AagrBONN_evm.TU.Sc2ySwM_228.148 Anthoceros agrestis HOM05D004675 ORTHO05D005631 3.6e-58 228.8 202 57.4
C07p35010 Brassica napus HOM05D004675 ORTHO05D005631 5.9e-53 211.5 148 73.0
CBR_g22979 Chara braunii HOM05D004675 ORTHO05D005631 1.0e-52 210.7 196 54.1
HanXRQChr01g0005811 Helianthus annuus HOM05D004675 ORTHO05D005631 7.3e-51 204.5 116 87.9
Lsat_1_v5_gn_0_42421 Lactuca sativa HOM05D004675 ORTHO05D005631 1.4e-49 200.3 207 51.7
MCO12G028 Micromonas commoda HOM05D004675 ORTHO05D005631 2.4e-46 189.5 207 50.7
TPR.G22441 Trifolium pratense HOM05D004675 ORTHO05D005631 4.1e-46 188.7 133 75.9
PRCOL_00002054 Prasinoderma coloniale HOM05D004675 ORTHO05D005631 2.3e-44 183.0 197 47.2
Ah.03g133810 Amaranthus hybridus HOM05D004675 ORTHO05D005631 3.9e-44 182.2 195 55.9
Cre08.g380400 Chlamydomonas reinhardtii HOM05D004675 ORTHO05D005631 2.8e-42 176.0 196 45.4
HanXRQChr14g0462331 Helianthus annuus HOM05D004675 ORTHO05D005631 1.0e-41 174.1 98 86.7
Lsat_1_v5_gn_3_72261 Lactuca sativa HOM05D004675 ORTHO05D005631 2.0e-37 159.8 231 41.1
Oeu049161.1 Olea europaea HOM05D004675 ORTHO05D005631 2.7e-37 159.5 192 51.0
Dinv15224 Davidia involucrata HOM05D004675 ORTHO05D005631 1.9e-35 153.3 194 47.9
Oeu060827.1 Olea europaea HOM05D004675 ORTHO05D005631 1.1e-33 147.5 139 63.3
Atru.chr2.951 Acer truncatum HOM05D004675 ORTHO05D005631 4.4e-32 142.1 96 78.1
HanXRQChr13g0416091 Helianthus annuus HOM05D004675 ORTHO05D005631 1.3e-31 140.6 99 73.7
BcaC06g33934 Brassica carinata HOM05D004675 ORTHO05D005631 3.0e-28 129.4 92 71.7
Haze_26713 Corylus avellana HOM05D000877 ORTHO05D005631 3.9e-28 129.0 187 40.6
Atru.chr9.690 Acer truncatum HOM05D004675 ORTHO05D005631 6.6e-28 128.3 136 55.9
HanXRQChr11g0351801 Helianthus annuus HOM05D004675 ORTHO05D005631 1.4e-25 120.6 60 90.0
HanXRQChr10g0283671 Helianthus annuus HOM05D004675 ORTHO05D005631 2.2e-23 113.2 73 80.8
BolC7t44033H Brassica oleracea HOM05D004675 ORTHO05D005631 4.9e-23 112.1 82 68.3
Actinidia08091 Actinidia chinensis HOM05D004675 ORTHO05D005631 1.9e-22 110.2 59 89.8
A06p42320 Brassica napus HOM05D004675 ORTHO05D005631 5.4e-22 108.6 60 88.3
Actinidia25751 Actinidia chinensis HOM05D004675 ORTHO05D005631 4.3e-19 99.0 83 62.7
Cc11_g17360 Coffea canephora HOM05D004675 ORTHO05D005631 5.4e-14 82.0 61 63.9
BcaB01g02675 Brassica carinata HOM05D004675 ORTHO05D000065 2.1e-10 70.1 61 67.2
Atru.chr4.1238 Acer truncatum HOM05D004675 ORTHO05D052308 5.8e-08 62.0 37 75.7
Hma1.2p1_3454F.1_g336085 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 1.7e-07 60.5 38 71.1
BcaB04g19721 Brassica carinata HOM05D004675 ORTHO05D092614 3.8e-07 59.3 55 63.6


User provided reference genes

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