Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0031600 Rhododendron simsii HOM05D001532 ORTHO05D001402 3.9e-28 127.5 67 100.0
Rhsim07G0049600 Rhododendron simsii HOM05D001532 ORTHO05D001402 1.1e-09 66.2 51 68.6
vmacro13607 Vaccinium macrocarpon HOM05D001532 ORTHO05D001402 6.9e-09 63.5 51 64.7
Nitab4.5_0000468g0100 Nicotiana tabacum HOM05D001532 ORTHO05D001402 1.2e-08 62.8 45 71.1
Nitab4.5_0002319g0010 Nicotiana tabacum HOM05D001532 ORTHO05D001402 1.2e-08 62.8 45 71.1
vmacro13606 Vaccinium macrocarpon HOM05D001532 ORTHO05D001402 1.2e-08 62.8 45 71.1
vmacro22464 Vaccinium macrocarpon HOM05D001532 ORTHO05D001402 1.2e-08 62.8 45 71.1
SGA_v2.0_scaffold5G03105 Striga asiatica HOM05D001532 ORTHO05D001402 2.0e-08 62.0 45 68.9
THA.LOC104817147 Tarenaya hassleriana HOM05D001532 ORTHO05D001402 2.6e-08 61.6 45 68.9
Actinidia05842 Actinidia chinensis HOM05D001532 ORTHO05D001402 5.8e-08 60.5 51 58.8
CAN.G129.51 Capsicum annuum HOM05D001532 ORTHO05D001402 5.8e-08 60.5 45 68.9
Potri.001G231100 Populus trichocarpa HOM05D001532 ORTHO05D001402 1.0e-07 59.7 46 65.2
Cpa.g.c26789.3 Carica papaya HOM05D001532 ORTHO05D001402 1.7e-07 58.9 53 62.3
Lj9P619T33 Lonicera japonica HOM05D001532 ORTHO05D001402 1.7e-07 58.9 45 64.4
Peaxi162Scf00402g00084 Petunia axillaris HOM05D001532 ORTHO05D001402 1.7e-07 58.9 45 66.7
Thecc.05G180700 Theobroma cacao HOM05D001532 ORTHO05D001402 1.7e-07 58.9 53 62.3
Hma1.2p1_0541F.1_g174820 Hydrangea macrophylla HOM05D001532 ORTHO05D001402 2.2e-07 58.5 45 64.4
Eucgr.E01779 Eucalyptus grandis HOM05D001532 ORTHO05D001402 2.9e-07 58.2 45 64.4
Oeu060704.1 Olea europaea HOM05D001532 ORTHO05D001402 2.9e-07 58.2 45 64.4
CARHR139480 Cardamine hirsuta HOM05D001532 ORTHO05D001402 3.8e-07 57.8 45 64.4
Gohir.A01G198700 Gossypium hirsutum HOM05D001532 ORTHO05D001402 3.8e-07 57.8 53 64.2
Gohir.D01G188900 Gossypium hirsutum HOM05D001532 ORTHO05D001402 3.8e-07 57.8 53 64.2
Gorai.002G232400 Gossypium raimondii HOM05D001532 ORTHO05D001402 3.8e-07 57.8 53 64.2
Solyc01g073710.2 Solanum lycopersicum HOM05D001532 ORTHO05D001402 3.8e-07 57.8 45 66.7
PGSC0003DMG400028985 Solanum tuberosum HOM05D001532 ORTHO05D001402 3.8e-07 57.8 45 66.7
Atru.chr11.2710 Acer truncatum HOM05D001532 ORTHO05D001402 4.9e-07 57.4 51 56.9
Ca_11281_v3 Cicer arietinum L. HOM05D001532 ORTHO05D001402 4.9e-07 57.4 45 62.2
Ciclev10033019m.g Citrus clementina HOM05D001532 ORTHO05D001402 4.9e-07 57.4 45 62.2
COL.COLO4_29440 Corchorus olitorius HOM05D001532 ORTHO05D001402 4.9e-07 57.4 45 64.4
Migut.B01403 Erythranthe guttata HOM05D001532 ORTHO05D001402 4.9e-07 57.4 45 64.4
MD02G1319800 Malus domestica HOM05D001532 ORTHO05D001402 4.9e-07 57.4 45 64.4
Aa31LG1G25920 Aethionema arabicum HOM05D001343 ORTHO05D002008 6.5e-07 57.0 45 64.4
BcaB01g03320 Brassica carinata HOM05D001532 ORTHO05D001402 6.5e-07 57.0 45 64.4
MELO3C023929.2 Cucumis melo HOM05D001532 ORTHO05D001402 6.5e-07 57.0 45 62.2
CsaV3_3G032560 Cucumis sativus L. HOM05D001532 ORTHO05D001402 6.5e-07 57.0 45 62.2
Duzib093G0614 Durio zibethinus HOM05D001532 ORTHO05D001402 6.5e-07 57.0 45 62.2
MBI13_g42369_MAGBIO Magnolia biondii HOM05D001532 ORTHO05D001402 6.5e-07 57.0 45 64.4
Medtr8g446810 Medicago truncatula HOM05D001532 ORTHO05D001402 6.5e-07 57.0 45 62.2
Nitab4.5_0000012g0250 Nicotiana tabacum HOM05D001532 ORTHO05D001402 6.5e-07 57.0 45 62.2
Prupe.2G002300 Prunus persica HOM05D001532 ORTHO05D001402 6.5e-07 57.0 45 64.4
Gohir.A04G057000 Gossypium hirsutum HOM05D001532 ORTHO05D001402 8.4e-07 56.6 45 64.4
Gohir.D04G094000 Gossypium hirsutum HOM05D001532 ORTHO05D001402 8.4e-07 56.6 45 64.4
Gorai.009G393300 Gossypium raimondii HOM05D001532 ORTHO05D001402 8.4e-07 56.6 45 64.4
Lj7P562T18 Lonicera japonica HOM05D001532 ORTHO05D001402 8.4e-07 56.6 51 56.9
ClCG10G012730 Citrullus lanatus HOM05D001532 ORTHO05D001402 1.1e-06 56.2 45 62.2
MBI13_g29648_MAGBIO Magnolia biondii HOM05D001532 ORTHO05D001402 1.1e-06 56.2 45 62.2
RcHm_v2.0_Chr1g0313211 Rosa chinensis HOM05D001532 ORTHO05D001402 1.1e-06 56.2 45 60.0
RcHm_v2.0_Chr4g0404011 Rosa chinensis HOM05D001532 ORTHO05D001402 1.1e-06 56.2 45 60.0
AL4G43270 Arabidopsis lyrata HOM05D001532 ORTHO05D001402 1.4e-06 55.8 45 62.2
Carub.0004s2690 Capsella rubella HOM05D001532 ORTHO05D001402 1.4e-06 55.8 45 62.2
Dinv39650 Davidia involucrata HOM05D001532 ORTHO05D001402 1.4e-06 55.8 45 57.8
ECA236G3146 Erigeron canadensis HOM05D001532 ORTHO05D001402 1.4e-06 55.8 45 60.0
FvH4_7g00040 Fragaria vesca HOM05D001532 ORTHO05D001402 1.4e-06 55.8 45 60.0
FAN03G1035 Fragaria x ananassa HOM05D001532 ORTHO05D001402 1.4e-06 55.8 45 60.0
FAN06G0369 Fragaria x ananassa HOM05D001532 ORTHO05D001402 1.4e-06 55.8 45 60.0
FAN10G0410 Fragaria x ananassa HOM05D001532 ORTHO05D001402 1.4e-06 55.8 45 60.0
Nn2g15744 Nelumbo nucifera HOM05D001532 ORTHO05D001402 1.4e-06 55.8 51 56.9
TWI09G0577 Tripterygium wilfordii HOM05D001532 ORTHO05D001402 1.4e-06 55.8 49 57.1
BolC3t15301H Brassica oleracea HOM05D001532 ORTHO05D001402 1.9e-06 55.5 45 64.4
BraA03t11682Z Brassica rapa HOM05D001532 ORTHO05D001402 1.9e-06 55.5 45 64.4
CiPaw.14G074900 Carya illinoinensis HOM05D001532 ORTHO05D001402 1.9e-06 55.5 45 60.0
Dinv43942 Davidia involucrata HOM05D001532 ORTHO05D001402 1.9e-06 55.5 45 62.2
Glyma.15G217700 Glycine max HOM05D001532 ORTHO05D001402 1.9e-06 55.5 45 60.0
Lsat_1_v5_gn_7_33641 Lactuca sativa HOM05D001532 ORTHO05D001402 1.9e-06 55.5 55 52.7
PSO801G0571 Papaver somniferum HOM05D001532 ORTHO05D001402 1.9e-06 55.5 51 54.9
PGR142G1780 Punica granatum HOM05D001532 ORTHO05D001402 1.9e-06 55.5 51 54.9
MSTRG.28102 Avicennia marina HOM05D001532 ORTHO05D001402 2.5e-06 55.1 45 62.2
Cc02_g26870 Coffea canephora HOM05D001532 ORTHO05D001402 2.5e-06 55.1 48 58.3
Psat4g142600 Pisum sativum HOM05D001532 ORTHO05D001402 2.5e-06 55.1 45 60.0
arahy.Tifrunner.gnm1.ann1.M3EH65 Arachis hypogaea HOM05D001532 ORTHO05D001402 3.2e-06 54.7 45 60.0
C03p29520 Brassica napus HOM05D001532 ORTHO05D001402 3.2e-06 54.7 45 64.4
Sabra16G0138600 Salix brachista HOM05D001532 ORTHO05D001402 3.2e-06 54.7 46 60.9
SalBow5G4956 Salvia bowleyana HOM05D001532 ORTHO05D001402 3.2e-06 54.7 45 60.0
Sopen01g033280 Solanum pennellii HOM05D001532 ORTHO05D001402 3.2e-06 54.7 45 64.4
MSTRG.28101 Avicennia marina HOM05D001532 ORTHO05D001402 4.2e-06 54.3 45 60.0
Dinv06817 Davidia involucrata HOM05D001532 ORTHO05D001402 4.2e-06 54.3 45 60.0
Lj3g0006104 Lotus japonicus HOM05D001532 ORTHO05D001402 4.2e-06 54.3 45 57.8
PSO339G4993 Papaver somniferum HOM05D001532 ORTHO05D001402 4.2e-06 54.3 51 56.9
VMungo1127G1150 Vigna mungo HOM05D001532 ORTHO05D001402 4.2e-06 54.3 45 60.0
MSTRG.28103 Avicennia marina HOM05D001532 ORTHO05D001402 5.5e-06 53.9 45 60.0
Dinv03670 Davidia involucrata HOM05D001532 ORTHO05D001402 5.5e-06 53.9 46 58.7
Lsat_1_v5_gn_1_56441 Lactuca sativa HOM05D001532 ORTHO05D001402 5.5e-06 53.9 51 52.9
Cfa010707 Carpinus fangiana HOM05D001532 ORTHO05D001402 7.1e-06 53.5 44 59.1
FAN01G2178 Fragaria x ananassa HOM05D001532 ORTHO05D001402 7.1e-06 53.5 45 57.8
QL04p001582 Quercus lobata HOM05D001532 ORTHO05D001402 7.1e-06 53.5 51 52.9
unitig_61.g26436 Utricularia gibba HOM05D001532 ORTHO05D001402 7.1e-06 53.5 45 60.0
BcaC01g05176 Brassica carinata HOM05D001532 ORTHO05D001402 9.3e-06 53.1 45 62.2
A03p24750 Brassica napus HOM05D001532 ORTHO05D001402 9.3e-06 53.1 45 62.2
FAN01G2635 Fragaria x ananassa HOM05D001532 ORTHO05D001402 9.3e-06 53.1 45 57.8
Sc15g0000750 Simmondsia chinensis HOM05D001532 ORTHO05D001402 9.3e-06 53.1 44 59.1


User provided reference genes

Program Settings